ViewGene
Locus Name:
GeneID:
Location:

GeneID:6083
TrivialName: PA14_31080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31080
PAO1 Ortholog Locus:
Sequence Length:576
Protein Length:191
Start: 2704179
Stop: 2703604
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61134.1| (AJ536756) putative plasmid conjugal transfer transmembrane protein [Ralstonia oxalatica]
Identities = 150/199 (75%), Positives = 163/199 (81%), Gaps = 8/199 (4%)
Sequence:
ATGACCGCCGTTTCCACTGGCGCCAACACCACTGGAAAGGCGCCGCGTCCTCGCTCGCGCCAGCGCGCTCGC
ATCGTGCTCGCGGGCTTCGCCGCCTGCGGCCTTGCTGCGCTGGCCTGGGCGTCCTTCGTGCATCCGATGCCG
CGCCTGATCTACAACCCGTCCGACAGCGTTCCGGTGGGCTGGTATCGCATCGCGCCACCCGATGCGCCGCGC
GTCGGCTCCATCGTGCTGACCACGCTGCCGCCAGACGCCGCCGCGCTGGCCGCGCAGCGCGGCTACCTGCCG
GCGCGCGTGCCGCTGCTCAAGCGCGTGGGCGCGGTCGCGCCGCAGGAGGTGTGCGTTGCCAGCGGCATCGTC
CGCATCGACGGCGTGCCTTCGGCCGCCGCGCTGCCCGCCGACCGTTGGGGCCGCCCGCTGCCATCCTGGCAG
CAGTGCCGCCGCCTTGAACCCGGCGAGCTTTTCCTGTTGAGCGTGACCAACCCGTCGTCGTTCGACAGCCGG
TATTTCGGCCCGGTTGCCGCATCCGCCGTGATCGGCGTCGCGCACCCGATCCGGCTGGAGGCCCGCCCATGA
Translation:
MTAVSTGANTTGKAPRPRSRQRARIVLAGFAACGLAALAWASFVHPMPRLIYNPSDSVPVGWYRIAPPDAPR
VGSIVLTTLPPDAAALAAQRGYLPARVPLLKRVGAVAPQEVCVASGIVRIDGVPSAAALPADRWGRPLPSWQ
QCRRLEPGELFLLSVTNPSSFDSRYFGPVAASAVIGVAHPIRLEARP*
AnnotationID:6084GeneID:6083
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:37
Gene Name:
Confidence Code:3
GeneProduct:putative conjugal transfer protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4959
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68530397|gb|EAN53359.1|  probable conjugal transfer traF transmembrane protein 
[Ralstonia metallidurans CH34]
     Length=195
     Score =  307 bits (786),  Expect = 1e-82
     Identities = 156/199 (78%), Positives = 167/199 (83%), Gaps = 12/199 (6%)

gi|27817707|emb|CAD61134.1|  putative plasmid conjugal transfer transmembrane protein 
[Cupriavidus oxalaticus]
     Length=199
     Score =  293 bits (750),  Expect = 2e-78
     Identities = 150/199 (75%), Positives = 163/199 (81%), Gaps = 8/199 (4%)








 
Structural Features:
COG4959, TraF, Type IV secretory pathway, protease TraF [Posttranslational modification, 
protein turnover, chaperones / Intracellular trafficking and secretion].
             CD-Length = 173 residues,  86.7% aligned
             Score =  145 bits (366), Expect = 4e-36






   
Genomic Context:






   
Comment:


















    ReferenceID:12046




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29286




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6083
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198353
                           emb|CAD61134.1|
                           (AJ536756) putative plasmid conjugal transfer transmembrane protein [Ralstonia oxalatica]
                           199
                           75.37
                           81.90
                           8
                           757.0
     

     
     
198354
                           emb|CAD16309.1|
                           (AL646070) PROBABLE CONJUGAL TRANSFER TRAF TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           199
                           70.85
                           76.88
                           8
                           681.0
     

     
     
198355
                           dbj|BAB52520.1|
                           (AP003008) plasmid transfer protein; TraF [Mesorhizobium loti]
                           199
                           38.69
                           47.73
                           25
                           314.0
     

     
     
198356
                           emb|CAD31513.1|
                           (AL672112) PROBABLE TRAF CONJUGAL TRANSFER PROTEIN [Mesorhizobium loti]
                           199
                           38.69
                           47.23
                           25
                           311.0
     

     
     
198357
                           dbj|BAC45312.1|
                           (AP005935) conjugal transfer protein precursor [Bradyrhizobium japonicum USDA 110]
                           202
                           33.66
                           45.54
                           32
                           300.0
     

     






      

          
GC ORFID: 49085How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2249747Stop: 2250322

          
Length: 576


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCGCCGTTTCCACTGGCGCCAACACCACTGGAAAGGCGCCGCGTCCTCGCTCGCGCCAGCGCGCTCGC 
ATCGTGCTCGCGGGCTTCGCCGCCTGCGGCCTTGCTGCGCTGGCCTGGGCGTCCTTCGTGCATCCGATGCCG 
CGCCTGATCTACAACCCGTCCGACAGCGTTCCGGTGGGCTGGTATCGCATCGCGCCACCCGATGCGCCGCGC 
GTCGGCTCCATCGTGCTGACCACGCTGCCGCCAGACGCCGCCGCGCTGGCCGCGCAGCGCGGCTACCTGCCG 
GCGCGCGTGCCGCTGCTCAAGCGCGTGGGCGCGGTCGCGCCGCAGGAGGTGTGCGTTGCCAGCGGCATCGTC 
CGCATCGACGGCGTGCCTTCGGCCGCCGCGCTGCCCGCCGACCGTTGGGGCCGCCCGCTGCCATCCTGGCAG 
CAGTGCCGCCGCCTTGAACCCGGCGAGCTTTTCCTGTTGAGCGTGACCAACCCGTCGTCGTTCGACAGCCGG 
TATTTCGGCCCGGTTGCCGCATCCGCCGTGATCGGCGTCGCGCACCCGATCCGGCTGGAGGCCCGCCCATGA