ViewGene

Locus Name:
GeneID:
Location:

GeneID:6082
TrivialName: PA14_31090
AnnotatorUID: danlee
Modification Date/Time:2006-04-11 15:03:01
LocusName:PA14_31090
PAO1 Ortholog Locus:
Sequence Length:918
Protein Length:305
Start: 2705093
Stop: 2704176
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16310.1| (AL646070) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum]
Identities = 139/177 (78%), Positives = 150/177 (84%)
Sequence:
TTGCACGCGAGACGGCACCGGTCAGCGCCGCCGCGCGCGAAATCACCGCCCTGGTGGACGAACTGCTGCGGT
GGACGACATGACAGCGAAGCCACCACAGAGCGGCAAACGCACGGCAAAACGCGTCGGCATCGGTGCGCGTCC
TCCTGCGAATCCGCACGCCGAGGCGTGGATTCGCCAGGGCGATGCCGATGCGCTGGGCAAGGGCGACCTCTA
CACGGCTCGCCTCACGCTCGACATCACGCCCGCACTGCGGGCGCGCATCAAGGTATCGGCCTTCACGCAAGG
CGTGACCGTGGCCGACCTGCTGCGCGGCCTGCTGGAGCGGGAGTTTCCCGAGAACCGCAGGGAGAACACACC
ATGACTGCATCCACTGCACCTGCTGCCGCGCCTGCCGCTGGCGCGGCCACGGCTGCGCCACAGCCATCATTC
ATCGCACCTTCCGGCCAGCCCGCCAGCGCGCCGCTGACGCGCGTGGCGCTGGCCTACATCGAGGCCCGTTTC
AAGCTCTACCTGCGCTTTGGCGAACCCGCGCGCACGCACCAGCTCGACCGCTGGCGACGCTGCGCCATGTTC
CTGCCGGGCGCTGTGTTCTGCCGCGTGCGCTGGCAGGCCAACGACTACGGCACCGTGCGCTGGCAGCTCATG
GTGATGCAAGCCTGCACACCGCTGGACGCGGCGCAGCGCATCCCCGGCGTGCAGCCTGGCGCGCGCCTGCTA
CTGCACGCCGAGGGCGACGGGCAAGTGCGCGCCGTGCTGGAACGCATCGACGCCATCGAGGCGCTGGGCATC
GCGCCTGTCGCCGTCTCGCCCGCGTACTGGCGCACGCTCGCCAACCGGCTCGCTGCGCGCCTGCCGCTGCCC
GAGTACACCGCCGAGCGGCACGCCGCCTGGTTGGCCGGGAGGGTGCTGCCATGA
Translation:
MHARRHRSAPPRAKSPPWWTNCCGGRHDSEATTERQTHGKTRRHRCASSCESARRGVDSPGRCRCAGQGRPL
HGSPHARHHARTAGAHQGIGLHARRDRGRPAARPAGAGVSREPQGEHTMTASTAPAAAPAAGAATAAPQPSF
IAPSGQPASAPLTRVALAYIEARFKLYLRFGEPARTHQLDRWRRCAMFLPGAVFCRVRWQANDYGTVRWQLM
VMQACTPLDAAQRIPGVQPGARLLLHAEGDGQVRAVLERIDAIEALGIAPVAVSPAYWRTLANRLAARLPLP
EYTAERHAAWLAGRVLP*
AnnotationID:6083GeneID:6082
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68526160|gb|EAN49134.1|  hypothetical protein RmetDRAFT_0432 [Ralstonia metallidurans CH34]
     Length=281
     Score =  451 bits (1159),  Expect = 2e-125
     Identities = 225/285 (78%), Positives = 243/285 (85%), Gaps = 5/285 (1%)

gi|56552836|ref|YP_163675.1|  hypothetical protein ZMO1940 [Zymomonas mobilis subsp. mobilis ZM4]
     Length=204
     Score =  317 bits (813),  Expect = 2e-85
     Identities = 164/207 (79%), Positives = 171/207 (82%), Gaps = 14/207 (6%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:15916
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29284
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6082

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198348 emb|CAD16310.1| (AL646070) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum] 305 46.22 49.83 124 725.0
198349 emb|CAD61133.1| (AJ536756) hypothetical protein [Ralstonia oxalatica] 305 42.95 46.55 128 676.0
198352 dbj|BAC45313.1| (AP005935) bll0048 [Bradyrhizobium japonicum USDA 110] 309 24.59 32.36 141 300.0
198351 dbj|BAB54914.1| (AP003017) unknown protein [Mesorhizobium loti] 306 22.22 32.35 139 295.0
198350 emb|CAE27679.1| (BX572600) conserved hypothetical protein [Rhodopseudomonas palustris CGA009] 306 20.91 29.41 150 304.0
GC ORFID: 49084How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2248833Stop: 2249750
Length: 918
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGCACGCGAGACGGCACCGGTCAGCGCCGCCGCGCGCGAAATCACCGCCCTGGTGGACGAACTGCTGCGGT
GGACGACATGACAGCGAAGCCACCACAGAGCGGCAAACGCACGGCAAAACGCGTCGGCATCGGTGCGCGTCC
TCCTGCGAATCCGCACGCCGAGGCGTGGATTCGCCAGGGCGATGCCGATGCGCTGGGCAAGGGCGACCTCTA
CACGGCTCGCCTCACGCTCGACATCACGCCCGCACTGCGGGCGCGCATCAAGGTATCGGCCTTCACGCAAGG
CGTGACCGTGGCCGACCTGCTGCGCGGCCTGCTGGAGCGGGAGTTTCCCGAGAACCGCAGGGAGAACACACC
ATGACTGCATCCACTGCACCTGCTGCCGCGCCTGCCGCTGGCGCGGCCACGGCTGCGCCACAGCCATCATTC
ATCGCACCTTCCGGCCAGCCCGCCAGCGCGCCGCTGACGCGCGTGGCGCTGGCCTACATCGAGGCCCGTTTC
AAGCTCTACCTGCGCTTTGGCGAACCCGCGCGCACGCACCAGCTCGACCGCTGGCGACGCTGCGCCATGTTC
CTGCCGGGCGCTGTGTTCTGCCGCGTGCGCTGGCAGGCCAACGACTACGGCACCGTGCGCTGGCAGCTCATG
GTGATGCAAGCCTGCACACCGCTGGACGCGGCGCAGCGCATCCCCGGCGTGCAGCCTGGCGCGCGCCTGCTA
CTGCACGCCGAGGGCGACGGGCAAGTGCGCGCCGTGCTGGAACGCATCGACGCCATCGAGGCGCTGGGCATC
GCGCCTGTCGCCGTCTCGCCCGCGTACTGGCGCACGCTCGCCAACCGGCTCGCTGCGCGCCTGCCGCTGCCC
GAGTACACCGCCGAGCGGCACGCCGCCTGGTTGGCCGGGAGGGTGCTGCCATGA