ViewGene
Locus Name:
GeneID:
Location:

GeneID:6081
TrivialName: PA14_31100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31100
PAO1 Ortholog Locus:
Sequence Length:639
Protein Length:212
Start: 2705649
Stop: 2705011
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61131.1| (AJ536756) putative plasmid partition protein [Ralstonia oxalatica]
Identities = 204/210 (97%), Positives = 207/210 (98%)
Sequence:
ATGATCGTTGCTCTGCTCAACCAGAAAGGGGGCGTCGGCAAGACCACGCTCGCCACCCACATCGCCGGCGAA
CTGGCAATGCGTGGCCAGCACGTCGTGCTGCTGGACGCCGACCCGCAGGGTTCATCGCTGGACTGGACGCAG
CGTAGAAGCCAGCAAGGCTTGCCACGGCTGTTCAGTGCCGTGGGCCTCGCACGCGAAACGCTGCATCAGGAA
GCGCCAGAGCTTGCCAGGCGGGCCGATCACGTCGTCATCGACGGCCCGCCGCGCATCGCCGCCTTGGCGCGC
TCCGCGCTGCTGGCGGCCGAGCGCGTGCTGATCCCGGTGCAGCCCAGTCCCTACGACTTATGGGCCAGCGCC
GAGATGGTGGCGCTGATCCGCGAGGCGCAGGTGTTCCGGCCTGCGCTGCGCGCGGCCTTCGTCATCAACCGG
CGCATCAGTACCACCGTGATCGGGCGCGAAGCGCGCCAGGCGCTGGCCGACCAGCCGCTTCCTGCGCTGCGC
GCGGAAGTGCATCAGCGCATCGTGTTCGCCGACAGCGTGGCCGCTGGCCGGCTTGCACGCGAGACGGCACCG
GTCAGCGCCGCCGCGCGCGAAATCACCGCCCTGGTGGACGAACTGCTGCGGTGGACGACATGA
Translation:
MIVALLNQKGGVGKTTLATHIAGELAMRGQHVVLLDADPQGSSLDWTQRRSQQGLPRLFSAVGLARETLHQE
APELARRADHVVIDGPPRIAALARSALLAAERVLIPVQPSPYDLWASAEMVALIREAQVFRPALRAAFVINR
RISTTVIGREARQALADQPLPALRAEVHQRIVFADSVAAGRLARETAPVSAAAREITALVDELLRWTT*
AnnotationID:6082GeneID:6081
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:44
Gene Name:
Confidence Code:3
GeneProduct:putative plasmid partitioning protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1192
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68530394|gb|EAN53356.1| (PUTATIVE) Cobyrinic acid a,c-diamide synthase [Ralstonia metallidurans CH34]
     Length=212
     Score =  399 bits (1026),  Expect = 2e-110
     Identities = 208/212 (98%), Positives = 210/212 (99%), Gaps = 0/212 (0%)

gi|27817704|emb|CAD61131.1|  putative plasmid partition protein [Cupriavidus oxalaticus]
     Length=212
     Score =  392 bits (1007),  Expect = 4e-108
     Identities = 204/210 (97%), Positives = 207/210 (98%), Gaps = 0/210 (0%)

gi|17429626|emb|CAD16312.1|  PUTATIVE PARTITION PROTEIN [Ralstonia solanacearum]
gi|17547324|ref|NP_520726.1|  PUTATIVE PARTITION PROTEIN [Ralstonia solanacearum GMI1000]
     Length=212
     Score =  389 bits (998),  Expect = 4e-107
     Identities = 201/212 (94%), Positives = 208/212 (98%), Gaps = 0/212 (0%)






 
Structural Features:
COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and 
chromosome partitioning].
             CD-Length = 259 residues,  96.9% aligned
             Score =  111 bits (278), Expect = 6e-26






   
Genomic Context:






   
Comment:


















    ReferenceID:12042




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29282




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6081
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198336
                           emb|CAD61131.1|
                           (AJ536756) putative plasmid partition protein [Ralstonia oxalatica]
                           212
                           96.22
                           98.11
                           0
                           1007.0
     

     
     
198337
                           emb|CAD16312.1|
                           (AL646070) PUTATIVE PARTITION PROTEIN [Ralstonia solanacearum]
                           212
                           94.81
                           98.11
                           0
                           998.0
     

     
     
198338
                           dbj|BAC45315.1|
                           (AP005935) bll0050 [Bradyrhizobium japonicum USDA 110]
                           212
                           62.73
                           78.77
                           0
                           675.0
     

     
     
198339
                           emb|CAE27680.1|
                           (BX572600) putative partition protein [Rhodopseudomonas palustris CGA009]
                           212
                           58.96
                           74.52
                           0
                           637.0
     

     
     
198340
                           gb|AAO72133.1|
                           (AY228335) ParA2 [Xanthomonas citri]
                           212
                           54.24
                           71.69
                           3
                           569.0
     

     






      

          
GC ORFID: 49083How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2248277Stop: 2248915

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGATCGTTGCTCTGCTCAACCAGAAAGGGGGCGTCGGCAAGACCACGCTCGCCACCCACATCGCCGGCGAA 
CTGGCAATGCGTGGCCAGCACGTCGTGCTGCTGGACGCCGACCCGCAGGGTTCATCGCTGGACTGGACGCAG 
CGTAGAAGCCAGCAAGGCTTGCCACGGCTGTTCAGTGCCGTGGGCCTCGCACGCGAAACGCTGCATCAGGAA 
GCGCCAGAGCTTGCCAGGCGGGCCGATCACGTCGTCATCGACGGCCCGCCGCGCATCGCCGCCTTGGCGCGC 
TCCGCGCTGCTGGCGGCCGAGCGCGTGCTGATCCCGGTGCAGCCCAGTCCCTACGACTTATGGGCCAGCGCC 
GAGATGGTGGCGCTGATCCGCGAGGCGCAGGTGTTCCGGCCTGCGCTGCGCGCGGCCTTCGTCATCAACCGG 
CGCATCAGTACCACCGTGATCGGGCGCGAAGCGCGCCAGGCGCTGGCCGACCAGCCGCTTCCTGCGCTGCGC 
GCGGAAGTGCATCAGCGCATCGTGTTCGCCGACAGCGTGGCCGCTGGCCGGCTTGCACGCGAGACGGCACCG 
GTCAGCGCCGCCGCGCGCGAAATCACCGCCCTGGTGGACGAACTGCTGCGGTGGACGACATGA