ViewGene
Locus Name:
GeneID:
Location:

GeneID:6080
TrivialName: PA14_31110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31110
PAO1 Ortholog Locus:
Sequence Length:1329
Protein Length:442
Start: 2707231
Stop: 2705903
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16313.1| (AL646071) HYPOTHETICAL REPLICATION INITIATOR AND TRANSCRIPTION REPRESSOR PROTEIN [Ralstonia solanacearum]
Identities = 237/271 (87%), Positives = 252/271 (92%)
Sequence:
GTGCGGCGGCTATCGCCGCCTTGCACAGCTTCCGCCACTGCCGTTGCAGTAGGGGGGACGTTTCGCAGCCCC
TGCAATTCGTCCCTTAGCAAGAAGCCTCGCTTTCTTGAAAGTGCCTCCATCCGGCCGCGTGGTGTGGCCGGG
CTTGATGGAGGTTCATCCCATGCGACCAGCTCCCTTGCGGCCTGCCGCCACTGTCTCGACCGCTGCCGCGCA
GCCGCAGCGTTACCTCACCAACGACGAAGCCGCCGAGTACCTGCGCCTGTCGCCGCGCACGCTGGAGAAGCA
GCGCGTGATCGGCGGCGGGCCACGCTTTCGCAAGTTCGGCCGGCGCGTCATGTACGCCGTGGCCGACCTCGA
CGCCTGGGCGGCCGACCGCAGCTTCGAGACGACTTCCGATCCCGAGTACGCCGAGCACCACTCGGCGGACAG
CCGTGCGCGCTGATCGCTGGCGCGCGCCAGGCCACAGCCATGTCCATCTCCGCGCTGCCATTTCGGCAGCGG
CCCCCGCAAGAACGCGAACAGCTCGACCTGTTCCGCGCCTTGCCGGGCGACATGGCACCGCGCGACAGCCAG
GACTTGATGGCCTATCCGTTCTTCTCGCTCGCCAAGTCCAAGCGGGTCAAGCCCATCGACTTCCGGGCGGGC
AACGTCACGATCCGCGTGGAAGGCACGCAGGAGCATGGCATCGCCACGATTTGGGATGCCGACGTGCTGATT
TGGGCGGCCTCACAGATCGTGGAGGCGAAGGATGCGGGCCTGCGGCCTTCGCGGCTGATCCGTGCGACGCCC
TACGAGATCCTGCGCTTCATCGGGCGCGGCAAGTCGCTGCGCGACTACCAGCGCCTCAAAGCGGCCTTGGAT
CGCCTGCAATCGACCACGGTGGCCACGTCCATCCGCGAGACAACCGGGCGGCGTTTGCACCGCTTCTCGTGG
ATCAACGAATGGAAGGAACTGGCCGATGCCAGCGGCACACCGCTGGGCATCGAGCTGATCTTGCCGGACTGG
TTCTATACGGGCGTGCTGGATGCCGCCCTGGTGCTGACCATCGACCCGGCGTATTTCCGGCTGACCGGCGGC
ATCGAGCGGTGGCTGTACCGCCTGGTGCGCAAGCACGGCGGCAAGCAGGCATACGGCTGGCAGTTCGACTTC
CGCTACCTGCACCAGAAATCCGGCAGCACCGCCAAGCCCTACGACTTCGCCTGCGACCTGCGCGCGCTCGTC
GCGCGGCAGTCGCTGCCCGGCTATGTCCTGGGCATCGAACGGATGCCGGACAACGGCATGGAACTGCTGACC
TTCCGGCCCGTGCCGCATACGGCACGGGGATAA
Translation:
MRRLSPPCTASATAVAVGGTFRSPCNSSLSKKPRFLESASIRPRGVAGLDGGSSHATSSLAACRHCLDRCRA
AAALPHQRRSRRVPAPVAAHAGEAARDRRRATLSQVRPARHVRRGRPRRLGGRPQLRDDFRSRVRRAPLGGQ
PCALIAGARQATAMSISALPFRQRPPQEREQLDLFRALPGDMAPRDSQDLMAYPFFSLAKSKRVKPIDFRAG
NVTIRVEGTQEHGIATIWDADVLIWAASQIVEAKDAGLRPSRLIRATPYEILRFIGRGKSLRDYQRLKAALD
RLQSTTVATSIRETTGRRLHRFSWINEWKELADASGTPLGIELILPDWFYTGVLDAALVLTIDPAYFRLTGG
IERWLYRLVRKHGGKQAYGWQFDFRYLHQKSGSTAKPYDFACDLRALVARQSLPGYVLGIERMPDNGMELLT
FRPVPHTARG*
AnnotationID:6081GeneID:6080
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:57
Gene Name:
Confidence Code:3
GeneProduct:putative replication initiator and transcriptional repressor protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5534
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68526158|gb|EAN49132.1|  conserved hypothetical replication initiator and transcription        
repressor protein [Ralstonia metallidurans CH34]
     Length=289
     Score =  562 bits (1448),  Expect = 1e-158
     Identities = 278/288 (96%), Positives = 281/288 (97%), Gaps = 0/288 (0%)

gi|17429628|emb|CAD16313.1|  HYPOTHETICAL REPLICATION INITIATOR AND TRANSCRIPTION REPRESSOR 
PROTEIN [Ralstonia solanacearum]
gi|17547325|ref|NP_520727.1|  HYPOTHETICAL REPLICATION INITIATOR AND TRANSCRIPTION REPRESSOR 
 PROTEIN [Ralstonia solanacearum GMI1000]
     Length=281
     Score =  485 bits (1249),  Expect = 1e-135
     Identities = 237/271 (87%), Positives = 252/271 (92%), Gaps = 0/271 (0%)

gi|27817703|emb|CAD61130.1|  putative replication initiation protein [Cupriavidus oxalaticus]
     Length=285
     Score =  483 bits (1242),  Expect = 7e-135
     Identities = 239/285 (83%), Positives = 256/285 (89%), Gaps = 0/285 (0%)

gi|67088840|gb|EAM08306.1|  conserved hypothetical replication initiator and transcription
repressor protein [Azotobacter vinelandii AvOP]
     Length=285
     Score =  481 bits (1237),  Expect = 3e-134
     Identities = 241/286 (84%), Positives = 259/286 (90%), Gaps = 2/286 (0%)






 
Structural Features:
COG5534, Plasmid replication initiator protein [DNA replication, recombination, 
and repair].
             CD-Length = 383 residues,  80.2% aligned
             Score =  284 bits (727), Expect = 2e-77






   
Genomic Context:






   
Comment:


















    ReferenceID:15914




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29280




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6080
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198331
                           emb|CAD16313.1|
                           (AL646071) HYPOTHETICAL REPLICATION INITIATOR AND TRANSCRIPTION REPRESSOR PROTEIN [Ralstonia solanacearum]
                           442
                           54.29
                           58.37
                           161
                           1250.0
     

     
     
198332
                           emb|CAD61130.1|
                           (AJ536756) putative replication initiation protein [Ralstonia oxalatica]
                           442
                           54.07
                           57.91
                           157
                           1242.0
     

     
     
198333
                           emb|CAE27681.1|
                           (BX572600) possible replication protein A [Rhodopseudomonas palustris CGA009]
                           459
                           42.48
                           49.45
                           176
                           1001.0
     

     
     
198334
                           dbj|BAB54913.1|
                           (AP003017) replication protein A [Mesorhizobium loti]
                           512
                           37.89
                           44.53
                           220
                           986.0
     

     
     
198335
                           dbj|BAC45316.1|
                           (AP005935) replication protein A [Bradyrhizobium japonicum USDA 110]
                           538
                           32.71
                           40.70
                           209
                           817.0
     

     






      

          
GC ORFID: 49082How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2246695Stop: 2248023

          
Length: 1329


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCGGCGGCTATCGCCGCCTTGCACAGCTTCCGCCACTGCCGTTGCAGTAGGGGGGACGTTTCGCAGCCCC 
TGCAATTCGTCCCTTAGCAAGAAGCCTCGCTTTCTTGAAAGTGCCTCCATCCGGCCGCGTGGTGTGGCCGGG 
CTTGATGGAGGTTCATCCCATGCGACCAGCTCCCTTGCGGCCTGCCGCCACTGTCTCGACCGCTGCCGCGCA 
GCCGCAGCGTTACCTCACCAACGACGAAGCCGCCGAGTACCTGCGCCTGTCGCCGCGCACGCTGGAGAAGCA 
GCGCGTGATCGGCGGCGGGCCACGCTTTCGCAAGTTCGGCCGGCGCGTCATGTACGCCGTGGCCGACCTCGA 
CGCCTGGGCGGCCGACCGCAGCTTCGAGACGACTTCCGATCCCGAGTACGCCGAGCACCACTCGGCGGACAG 
CCGTGCGCGCTGATCGCTGGCGCGCGCCAGGCCACAGCCATGTCCATCTCCGCGCTGCCATTTCGGCAGCGG 
CCCCCGCAAGAACGCGAACAGCTCGACCTGTTCCGCGCCTTGCCGGGCGACATGGCACCGCGCGACAGCCAG 
GACTTGATGGCCTATCCGTTCTTCTCGCTCGCCAAGTCCAAGCGGGTCAAGCCCATCGACTTCCGGGCGGGC 
AACGTCACGATCCGCGTGGAAGGCACGCAGGAGCATGGCATCGCCACGATTTGGGATGCCGACGTGCTGATT 
TGGGCGGCCTCACAGATCGTGGAGGCGAAGGATGCGGGCCTGCGGCCTTCGCGGCTGATCCGTGCGACGCCC 
TACGAGATCCTGCGCTTCATCGGGCGCGGCAAGTCGCTGCGCGACTACCAGCGCCTCAAAGCGGCCTTGGAT 
CGCCTGCAATCGACCACGGTGGCCACGTCCATCCGCGAGACAACCGGGCGGCGTTTGCACCGCTTCTCGTGG 
ATCAACGAATGGAAGGAACTGGCCGATGCCAGCGGCACACCGCTGGGCATCGAGCTGATCTTGCCGGACTGG 
TTCTATACGGGCGTGCTGGATGCCGCCCTGGTGCTGACCATCGACCCGGCGTATTTCCGGCTGACCGGCGGC 
ATCGAGCGGTGGCTGTACCGCCTGGTGCGCAAGCACGGCGGCAAGCAGGCATACGGCTGGCAGTTCGACTTC 
CGCTACCTGCACCAGAAATCCGGCAGCACCGCCAAGCCCTACGACTTCGCCTGCGACCTGCGCGCGCTCGTC 
GCGCGGCAGTCGCTGCCCGGCTATGTCCTGGGCATCGAACGGATGCCGGACAACGGCATGGAACTGCTGACC 
TTCCGGCCCGTGCCGCATACGGCACGGGGATAA