ViewGene
Locus Name:
GeneID:
Location:

GeneID:608
TrivialName: PA14_70830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70830
PAO1 Ortholog Locus:PA5367
Sequence Length:1677
Protein Length:558
Start: 6308655
Stop: 6306979
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08752.1|AE004948_8 (AE004948) membrane protein component of ABC phosphate transporter [Pseudomonas aeruginosa PAO1]
Identities = 557/558 (99%), Positives = 557/558 (99%)
Sequence:
GTGAAACAGAAACAGGAAACCGTCAAAGCCTGGTTCGGCAGCGGCTCGCCCTGGGTGTGGATGAACGCCGGC
GCGGTGTCGATCGCGGTGATCATGACCATCGGCCTGCTGGCGGTGATCGCGGTACGCGGCCTCGGCCACTTC
TGGCCGGCGAACGTCATCGAGGCGACTTACCAGATCCCTGGCGAAGCCGCCAAGACCGTGATCGGCGAGGTG
GTCCAGGCCGAGGAAGTGCCGCGCGCGCGCCTGCGCAGCGCCGGCATGCCGGTCCCGGAGGCCGGCCCCGAA
TTCATGACCCGCGAGCTGCTCAAGCTGGGCAACCGCGAGCTTTACGGCAGCGATTTCTCCTGGGTCGTCGGC
GAGTGGCTGCAGGACATCAAGCGTCCCGAAGCGCTGATGGTTCTCGAACGCCGCGAGTGGGGCAACTTCTAC
GGCTACCTGCTGAGCGTCAAGGAGAACGGCCAGGTGGTCGCCGAAGGCGACGCCGCGGTAGGCGAACTGCAG
AAGCGCATGCAGCGGGTGGATGACCTCTACGCCAAGCTCTACAAGCTGGAGAAGGGCGACATCGGCGGGATC
AACCACGGTCTCGAGCGCCTGCGCCTGAAAGAGCGCAAGTTGCAGTTGGACGGCAAGCTGGACGCCGCCGCC
CAGGCCGACCTGGCCGCCGAGCGCAGCGAGTTGCAGGCGCGCTACAAGGTCCTGGAAGAGCAGCTCAACGGC
CTGCACCAGGAGTTCAACCGCGACAGCGTGGTAATGCGCGACGCCAGCGGCCGCGAGAGCGAAATCACCCTT
GGCAAGCTGGTGCATGCCTACCAGCCCAACGCCATGGGCCTGGGCACCAAGATGACGGTGTACTTCAAGAAG
CTCTGGGAGTTCCTCAGCGACGATCCGCGCGAGGCCAATACCGAGGGCGGTATCTTCCCGGCGATCTTCGGC
ACCGTGATGATGACCCTGGTGATGGCGCTGATCGTCACCCCGTTCGGCGTGATCGCTGCGGTCTACCTGCGC
GAGTACGCCAAGCAGGGGCCGCTGACCCGGGTGATCCGCATCGCCGTGAACAACCTCGCCGGCGTACCGGCG
ATCGTCTACGGCGTGTTCGGCCTGGGCTTCTTCGTCTACGTGCTGGGCGGTTCCATCGACCGGCTGTTCTTC
CCCGAGGCCCTGCCGGCGCCGACCTTCGGTACCCCCGGACTGTTCTGGGCCTCGCTGACCCTGGCGATCCTC
GCCGTGCCGGTGGTGATCGTCGCCACCGAGGAAGGCCTGGCGCGGATTCCGCGCGCGGTCCGCGAAGGCTCC
CTGGCGCTCGGCGCGACCAAGGCGGAAACGCTGTGGAAGATCGTCCTGCCGATGGCCAGCCCGGCGATGATG
ACCGGCCTGATCCTCGCCGTGGCTCGTGCCGCCGGCGAAGTGGCGCCGCTGATGCTGGTCGGCGTGGTGAAA
CTGGCACCGTCGCTGCCGGTCGACGGTAACTATCCGTACGTGCATCTCGACCAGAAGATCATGCACCTCGGT
TTCCATATCTACGACGTCGGTTTCCAGAGCCCCAACGTCGAGGCCGCACGGCCGCTGGTATACGCTACGGCG
TTGCTGCTGGTCGTGGTGATCGCCCTGCTGAACTTCTCCGCCATCGCGATCCGCAATCGCCTGCGCGAGAAG
TACAAGGCCCTGGAAAACTGA
Translation:
MKQKQETVKAWFGSGSPWVWMNAGAVSIAVIMTIGLLAVIAVRGLGHFWPANVIEATYQIPGEAAKTVIGEV
VQAEEVPRARLRSAGMPVPEAGPEFMTRELLKLGNRELYGSDFSWVVGEWLQDIKRPEALMVLERREWGNFY
GYLLSVKENGQVVAEGDAAVGELQKRMQRVDDLYAKLYKLEKGDIGGINHGLERLRLKERKLQLDGKLDAAA
QADLAAERSELQARYKVLEEQLNGLHQEFNRDSVVMRDASGRESEITLGKLVHAYQPNAMGLGTKMTVYFKK
LWEFLSDDPREANTEGGIFPAIFGTVMMTLVMALIVTPFGVIAAVYLREYAKQGPLTRVIRIAVNNLAGVPA
IVYGVFGLGFFVYVLGGSIDRLFFPEALPAPTFGTPGLFWASLTLAILAVPVVIVATEEGLARIPRAVREGS
LALGATKAETLWKIVLPMASPAMMTGLILAVARAAGEVAPLMLVGVVKLAPSLPVDGNYPYVHLDQKIMHLG
FHIYDVGFQSPNVEAARPLVYATALLLVVVIALLNFSAIAIRNRLREKYKALEN*
AnnotationID:617GeneID:608
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:01
Gene Name:pstA
Confidence Code:1
GeneProduct:hosphate ABC transporter, permease protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4985,COG0581
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70892.1|AE016733_4 (AE016794) phosphate ABC transporter, permease protein [Pseudomonas
           putida KT2440]
          Length = 556

 Score =  893 bits (2308), Expect = 0.0
 Identities = 441/554 (79%), Positives = 501/554 (90%)

>gb|AAO58904.1| (AE016876) phosphate ABC transporter, permease protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 557

 Score =  881 bits (2276), Expect = 0.0
 Identities = 438/555 (78%), Positives = 499/555 (89%)

>gb|AAN54778.1|AE015617_13 (AE015617) phosphate ABC transporter, permease protein, putative
           [Shewanella oneidensis MR-1]
          Length = 552

 Score =  641 bits (1653), Expect = 0.0
 Identities = 326/549 (59%), Positives = 414/549 (75%), Gaps = 1/549 (0%)






 
Structural Features:
COG4985, ABC-type phosphate transport system, auxiliary component 
[Inorganic ion transport and metabolism]
CD-Length = 289 residues, 100.0% aligned
Score =  455 bits (1171), Expect = 7e-129
Identities = 135/290 (46%), Positives = 180/290 (62%), Gaps = 1/290 (0%)

COG0581, PstA, ABC-type phosphate transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 292 residues, 100.0% aligned
Score =  264 bits (677), Expect = 2e-71
Identities = 116/317 (36%), Positives = 168/317 (52%), Gaps = 26/317 (8%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14175




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18361




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34732




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:608_cdd.html


    		




 
URL:

















    ReferenceID:35667




  
Author/Investigator(s):
        Nikata T, Sakai Y, Shibat K, Kato J, Kuroda A, Ohtake H.





  
Title:
        Molecular analysis of the phosphate-specific transport (pst) operon of Pseudomonas aeruginosa.




  
PubMed:
        8628229


MedLine:
        




    
Source:
Mol Gen Genet. 1996 Apr 10;250(6):692-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8628229









           
Homologs By Global Alignment 

           

       



     
Gene ID:608
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1038
                           PA5367_tr
                           translation of PA5367
                           558
                           99.82
                           99.82
                           0
                           2827.0
     

     
     
40472
                           gb|AAG08752.1|AE004948_8
                           (AE004948) membrane protein component of ABC phosphate transporter [Pseudomonas aeruginosa PAO1]
                           558
                           99.64
                           99.82
                           0
                           2824.0
     

     
     
40473
                           dbj|BAA08136.1|
                           (D45195) a transmembrane component of the phosphate specific transport complex [Pseudomonas aeruginosa]
                           564
                           88.65
                           89.00
                           57
                           2521.0
     

     
     
40474
                           gb|AAN70892.1|AE016733_4
                           (AE016794) phosphate ABC transporter, permease protein [Pseudomonas putida KT2440]
                           558
                           79.03
                           89.78
                           2
                           2308.0
     

     
     
40475
                           gb|AAO58904.1|
                           (AE016876) phosphate ABC transporter, permease protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           558
                           78.49
                           89.42
                           1
                           2273.0
     

     






      

          
GC ORFID: 43610How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5367Glimmer Score: 

          
Start: 5572344Stop: 5570668

          
Length: 1677


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5367 translation of PA5367Homolog Bit Score 1093.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4198 (ORF: BLASTX 885.0), t_PA5367 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAAACAGAAACAGGAAACCGTCAAAGCCTGGTTCGGCAGCGGCTCGCCCTGGGTGTGGATGAACGCCGGC 
GCGGTGTCGATCGCGGTGATCATGACCATCGGCCTGCTGGCGGTGATCGCGGTACGCGGCCTCGGCCACTTC 
TGGCCGGCGAACGTCATCGAGGCGACTTACCAGATCCCTGGCGAAGCCGCCAAGACCGTGATCGGCGAGGTG 
GTCCAGGCCGAGGAAGTGCCGCGCGCGCGCCTGCGCAGCGCCGGCATGCCGGTCCCGGAGGCCGGCCCCGAA 
TTCATGACCCGCGAGCTGCTCAAGCTGGGCAACCGCGAGCTTTACGGCAGCGATTTCTCCTGGGTCGTCGGC 
GAGTGGCTGCAGGACATCAAGCGTCCCGAAGCGCTGATGGTTCTCGAACGCCGCGAGTGGGGCAACTTCTAC 
GGCTACCTGCTGAGCGTCAAGGAGAACGGCCAGGTGGTCGCCGAAGGCGACGCCGCGGTAGGCGAACTGCAG 
AAGCGCATGCAGCGGGTGGATGACCTCTACGCCAAGCTCTACAAGCTGGAGAAGGGCGACATCGGCGGGATC 
AACCACGGTCTCGAGCGCCTGCGCCTGAAAGAGCGCAAGTTGCAGTTGGACGGCAAGCTGGACGCCGCCGCC 
CAGGCCGACCTGGCCGCCGAGCGCAGCGAGTTGCAGGCGCGCTACAAGGTCCTGGAAGAGCAGCTCAACGGC 
CTGCACCAGGAGTTCAACCGCGACAGCGTGGTAATGCGCGACGCCAGCGGCCGCGAGAGCGAAATCACCCTT 
GGCAAGCTGGTGCATGCCTACCAGCCCAACGCCATGGGCCTGGGCACCAAGATGACGGTGTACTTCAAGAAG 
CTCTGGGAGTTCCTCAGCGACGATCCGCGCGAGGCCAATACCGAGGGCGGTATCTTCCCGGCGATCTTCGGC 
ACCGTGATGATGACCCTGGTGATGGCGCTGATCGTCACCCCGTTCGGCGTGATCGCTGCGGTCTACCTGCGC 
GAGTACGCCAAGCAGGGGCCGCTGACCCGGGTGATCCGCATCGCCGTGAACAACCTCGCCGGCGTACCGGCG 
ATCGTCTACGGCGTGTTCGGCCTGGGCTTCTTCGTCTACGTGCTGGGCGGTTCCATCGACCGGCTGTTCTTC 
CCCGAGGCCCTGCCGGCGCCGACCTTCGGTACCCCCGGACTGTTCTGGGCCTCGCTGACCCTGGCGATCCTC 
GCCGTGCCGGTGGTGATCGTCGCCACCGAGGAAGGCCTGGCGCGGATTCCGCGCGCGGTCCGCGAAGGCTCC 
CTGGCGCTCGGCGCGACCAAGGCGGAAACGCTGTGGAAGATCGTCCTGCCGATGGCCAGCCCGGCGATGATG 
ACCGGCCTGATCCTCGCCGTGGCTCGTGCCGCCGGCGAAGTGGCGCCGCTGATGCTGGTCGGCGTGGTGAAA 
CTGGCACCGTCGCTGCCGGTCGACGGTAACTATCCGTACGTGCATCTCGACCAGAAGATCATGCACCTCGGT 
TTCCATATCTACGACGTCGGTTTCCAGAGCCCCAACGTCGAGGCCGCACGGCCGCTGGTATACGCTACGGCG 
TTGCTGCTGGTCGTGGTGATCGCCCTGCTGAACTTCTCCGCCATCGCGATCCGCAATCGCCTGCGCGAGAAG 
TACAAGGCCCTGGAAAACTGA