ViewGene
Locus Name:
GeneID:
Location:

GeneID:6078
TrivialName: PA14_31130
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31130
PAO1 Ortholog Locus:
Sequence Length:771
Protein Length:256
Start: 2707950
Stop: 2707180
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16315.1| (AL646071) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum]
Identities = 234/256 (91%), Positives = 241/256 (94%)
Sequence:
ATGACTGATCGCAGCGCCGACCACTGGTATCCGACAGCCGCCTATCTCTACGTCCTGCACCTCAACGGCCCC
GCGCTGGCTTGGGAATACCTGCGCAGGAATCCCGATTACCGCCGCGACTGGCTGCGCCGTCGCCGCTGGCCG
GACGCGGCGCAGGCTTGGAGccTGCGCCTGCTGGAAGACCCAGCCTTGGATGCGCGCGACGCGCATCCGGCC
TGgTTCcntGACCACGATGCCGTGGTGCAGCTCTATCCCGACGCCGACCCGCCACCCGAAGCCCATGCCTTC
GAGTTCTGGCGCGTTCCCGGCCGCAAGCAACTGATCCACGACGGCAAGCGCCTGGTGCTGGTGTCGCATTGG
CCCGGCTGCTGCCTGCGGCTCGCGCTCGCGCAGGGCCTGGAAGACGGCGTGGCCTACCTCTACGCCACTCGT
GCCTGCGCCACGCCCTGCGCGCGCTATCGCACGCTCGCGGCTGAACTCGACGCCCTGGCTGCCGCCACGGTT
GCCGCGCCTGCGGCGGCGGCCCGTTCGCGGCCCACGCCTGCCGCACTGCTGGAGCTGCACACCTTGCAGGCG
CTCGACGCGACCCTGGCGGGCGCGTCCTTGCGCGAAGTGGCCGAAGGGCTGTTCGGCGTGGAGGCCGTCGCG
GCCAACTGGCACAAGGACGGTGCCTTGCGCGCCCGCGTGCGCCGGCTGGTGCGCCGTGGCGATGCGCTGATG
TGCGGCGGCTATCGCCGCCTTGCACAGCTTCCGCCACTGCCGTTGCAGTAG
Translation:
MTDRSADHWYPTAAYLYVLHLNGPALAWEYLRRNPDYRRDWLRRRRWPDAAQAWSLRLLEDPALDARDAHPA
WFXDHDAVVQLYPDADPPPEAHAFEFWRVPGRKQLIHDGKRLVLVSHWPGCCLRLALAQGLEDGVAYLYATR
ACATPCARYRTLAAELDALAAATVAAPAAAARSRPTPAALLELHTLQALDATLAGASLREVAEGLFGVEAVA
ANWHKDGALRARVRRLVRRGDALMCGGYRRLAQLPPLPLQ*
AnnotationID:6079GeneID:6078
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 16:04:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5419
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|17547327|ref|NP_520729.1|  HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia 
solanacearum GMI1000]
     Length=256
     Score =  483 bits (1243),  Expect = 2e-135
     Identities = 234/256 (91%), Positives = 241/256 (94%), Gaps = 0/256 (0%)

gi|72607454|gb|EAO43414.1|  conserved hypothetical/unknown protein [Burkholderia ambifaria AMMD]
     Length=272
     Score =  465 bits (1196),  Expect = 7e-130
     Identities = 223/254 (87%), Positives = 232/254 (91%), Gaps = 0/254 (0%)








 
Structural Features:
COG5419, Uncharacterized conserved protein [Function unknown].
             CD-Length = 160 residues, 100.0% aligned
             Score = 75.4 bits (185), Expect = 7e-15






   
Genomic Context:






   
Comment:


















    ReferenceID:12036




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29276




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6078
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198327
                           emb|CAD16315.1|
                           (AL646071) HYPOTHETICAL/UNKNOWN PROTEIN [Ralstonia solanacearum]
                           256
                           91.40
                           94.14
                           0
                           1243.0
     

     
     
198328
                           emb|CAD61128.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           274
                           60.21
                           67.88
                           39
                           798.0
     

     






      

          
GC ORFID: 49080How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2245976Stop: 2246746

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACTGATCGCAGCGCCGACCACTGGTATCCGACAGCCGCCTATCTCTACGTCCTGCACCTCAACGGCCCC 
GCGCTGGCTTGGGAATACCTGCGCAGGAATCCCGATTACCGCCGCGACTGGCTGCGCCGTCGCCGCTGGCCG 
GACGCGGCGCAGGCTTGGAGccTGCGCCTGCTGGAAGACCCAGCCTTGGATGCGCGCGACGCGCATCCGGCC 
TGgTTCcntGACCACGATGCCGTGGTGCAGCTCTATCCCGACGCCGACCCGCCACCCGAAGCCCATGCCTTC 
GAGTTCTGGCGCGTTCCCGGCCGCAAGCAACTGATCCACGACGGCAAGCGCCTGGTGCTGGTGTCGCATTGG 
CCCGGCTGCTGCCTGCGGCTCGCGCTCGCGCAGGGCCTGGAAGACGGCGTGGCCTACCTCTACGCCACTCGT 
GCCTGCGCCACGCCCTGCGCGCGCTATCGCACGCTCGCGGCTGAACTCGACGCCCTGGCTGCCGCCACGGTT 
GCCGCGCCTGCGGCGGCGGCCCGTTCGCGGCCCACGCCTGCCGCACTGCTGGAGCTGCACACCTTGCAGGCG 
CTCGACGCGACCCTGGCGGGCGCGTCCTTGCGCGAAGTGGCCGAAGGGCTGTTCGGCGTGGAGGCCGTCGCG 
GCCAACTGGCACAAGGACGGTGCCTTGCGCGCCCGCGTGCGCCGGCTGGTGCGCCGTGGCGATGCGCTGATG 
TGCGGCGGCTATCGCCGCCTTGCACAGCTTCCGCCACTGCCGTTGCAGTAG