ViewGene

Locus Name:
GeneID:
Location:

GeneID:6077
TrivialName: PA14_31160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31160
PAO1 Ortholog Locus:
Sequence Length:324
Protein Length:107
Start: 2708860
Stop: 2709183
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM37029.1| (AE011854) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
Identities = 68/97 (70%), Positives = 80/97 (82%)
Sequence:
TTGTCCTGCGATTTGACGCTTCTGTCCATGCAGAAGCGATCCGTCCAACCTGGCCGCCCGGCCGGTGCCACC
ACCTTCGATGCCGAACTGGCGCAAGCCTTCGGCGCGGCGGTGCGCGCGCTACGGACGGAACGAGGGATCGCG
CAGGAATCGCTGGCACACCTGGCCGGCATCGAGCGTTCGCACATGGGCAAGGTCGAGCGCGGCGAACACATG
CCCACGCTGGCACTTATCTTCAAGATCGCCGGCGCGCTCGAATGCAGCACGGCGGTATTGATGAGCGAGGCT
GAAAGCCAGCTCGCAGCAGCAGCGGCCCAGCCGTAG
Translation:
MSCDLTLLSMQKRSVQPGRPAGATTFDAELAQAFGAAVRALRTERGIAQESLAHLAGIERSHMGKVERGEHM
PTLALIFKIAGALECSTAVLMSEAESQLAAAAAQP*
AnnotationID:6078GeneID:6077
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 17:05:27
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68526154|gb|EAN49128.1|  Helix-turn-helix motif [Ralstonia metallidurans CH34]
     Length=97
     Score =  166 bits (421),  Expect = 2e-40
     Identities = 86/95 (90%), Positives = 90/95 (94%), Gaps = 0/95 (0%)

Structural Features:
cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins 
belonging to the xenobiotic response element family of transcriptional regulators.
             CD-Length = 58 residues,  93.1% aligned
             Score = 52.1 bits (125), Expect = 2e-08

smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
             CD-Length = 56 residues,  91.1% aligned
             Score = 49.4 bits (118), Expect = 9e-08

pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix 
proteins includes Cro and CI.
             CD-Length = 55 residues,  96.4% aligned
             Score = 48.6 bits (116), Expect = 2e-07
Genomic Context:
Comment:
ReferenceID:15910
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29274
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6077

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198323 gb|AAM37029.1| (AE011854) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 107 63.55 74.76 9 340.0
198325 gb|AAM42414.1| (AE012430) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 107 57.00 70.09 10 288.0
198326 gb|AAN62096.1|AF440523_3 (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa] 107 50.46 62.61 10 265.0
198324 gb|AAF84529.1|AE003995_11 (AE003995) hypothetical protein [Xylella fastidiosa 9a5c] 126 49.20 60.31 21 293.0
GC ORFID: 49079How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2245066Stop: 2244743
Length: 324
Start Codon: TTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
TTGTCCTGCGATTTGACGCTTCTGTCCATGCAGAAGCGATCCGTCCAACCTGGCCGCCCGGCCGGTGCCACC
ACCTTCGATGCCGAACTGGCGCAAGCCTTCGGCGCGGCGGTGCGCGCGCTACGGACGGAACGAGGGATCGCG
CAGGAATCGCTGGCACACCTGGCCGGCATCGAGCGTTCGCACATGGGCAAGGTCGAGCGCGGCGAACACATG
CCCACGCTGGCACTTATCTTCAAGATCGCCGGCGCGCTCGAATGCAGCACGGCGGTATTGATGAGCGAGGCT
GAAAGCCAGCTCGCAGCAGCAGCGGCCCAGCCGTAG