ViewGene
Locus Name:
GeneID:
Location:

GeneID:6075
TrivialName: PA14_31190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31190
PAO1 Ortholog Locus:
Sequence Length:2055
Protein Length:684
Start: 2712999
Stop: 2710945
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61121.1| (AJ536756) hypothetical protein [Ralstonia oxalatica]
Identities = 481/690 (69%), Positives = 562/690 (81%), Gaps = 6/690 (0%)
Sequence:
ATGAACGCCGTAACCCAAACCGAAGCCCGCGCCATCGAAAACGCCGCACCGCTGGAAATGGCCGACCCTTCC
AAGAACCTGATCTTGGTTGCCCTTTCGCAGTTGCTGCCGCGCCGCTCCAAGCGCAACGCCCGCAAGATGCCG
CGCCTGTCCATCCCCGAACTGGCCGCGAGCATCGCCCGCATCGGCCTGCTGCAAAACCTGATCGTGATCGCA
TCCGCCGATGGCGAGCATTACGAGGTGGTGGCCGGTGATCGCCGCTTGACCGCCTTGAAGCTGCTGGCGAAG
AAGCGCCGCATCCCCGCCGACTACGAGGTACCTTGCCTGCTTGTGGCCGATGGCAGTGCCCGCACCGTCAGC
CTCGCCGAAAACCTGATGCGCGAGCAGATGCACCCCGCCGACCAGTTCGAGGCGTTCGCCGCGCTGGTCAAG
GAAGGCCGGCCCGTCGAGGACATTGCCGCCGACTTCGGCGTGTCCCCGCTGGTGGTGCAGCGCCGCTTGAAG
CTGGCCCACATCGCGCCGCGCCTGATGGCCGACTACCGCGCCGGAGCCGTCACGCTGGAACAGTTGATGGCC
CTGACCATCACCGACGACCACGCCGCACAGGAAGCCGCGTTCTATGGTGCGCCGGAATGGCAGCGCAGCCCG
TCCGCGCTGCGCGCACGCCTGACCGAGCGGGAAATCGACGCCACGCACGCGCTGGTGCGCTTCGTCGGGCTG
GACACCTACCGGCAGGCAGGCGGTGGCATCCGCCGCGACCTGTTCGCCGAAGGCGATGCCGGAACCTACCTC
ACCGACGCCGGGGTGCTGGAAACTCTGGTGCGCGAGAAGCTGGCAACGCTGGCCGAGGACGTGCGCGCCGAG
GGTTGGGCATGGGTGGAGGCCGTGCCGCATCTGGCCTACGAGGAACGGCAGGCGTTCCAGAACGCACCGCGC
CACCGCCGCGAGCCGACCGCCCGCGAGGCCCGCCGCATCGCCTCGCTGGAAAACCGCCTTGAAAAGATCGAC
GCAGAACTGGAAGAAGCCTGCGACGCCGAGGACGAGGCCAAGGCCGAGAAGCTGGAACAGCGGCGCGATCAG
GTGATCGGGGAACTGCAAGACGCGGAGGACGCCTTACAAGGCTATGCGCCCGAGGTGCGCGAGGTGGCCGGT
GCCATCGTCACCATCGACCGCAACGGCGAGGCCGTCATCCATCGCGGCCTGCTGCGCGAGGCCGAGGCCAAG
GCGCTGCGCACGCTGGAAAAGCTGCGGCGCGGTTTCGGCAACGCCGAAGGCGAAGCCGACAACGACGAAGGC
CACGACGCCGACGACGCGCCCAAGGCCGCGAGCCTGTCCGACCGGCTGGCGCAGCGGTTGAGCGCACACCGC
ACGGCGGCGCTGCAAATCGAAGTGGCACGGCATCCGCAAGTGGCGCTGGCCGCACTGGTGCATGGCATGGTG
CAGAAGGTCTTGCAGGACAGCTACTACGGCAACGACCAACCGCTGGGCGTGCGCGTGACGCTGCAAGACCGG
CTGGAAGGAATGGCCCCGGACTGGCCGGAATCGCCCGCCGCCGTGGCGCTGCGCGAACTGCAACAGGTGGCC
GGTGAAGGCTTGCCGCAGGACAGCGCCGAACTGTTCGCCGCGCTGCTGACGAAGCCGCAAGACGAACTGGTC
AATCTGCTGGCCGTGTGCGTGGCTTCCACGGTGGACGTGGTGACGCCTCGCGCCACGCCGCACCACCCCGGC
GAGGAACTGGCGCAGGCCGTGGGCCTCGACATGGCCGCATGGTGGCAGCCGACCGCAGAAGGCTACTTCAAG
CACGTTCCCAAGGCGGCAGTCCTGCAAGCCGTGGGCGAGTACGCACCCGAGCAGGTTTCCCGGCTGGCGAAG
TTGAAGAAGGCCGACATTGCCAGCGAGGCCGAGCGGCTGGCGAACGGCAGCGGATGGATGCCCGCCATCTTC
AAGGCAGAAGGCGCGCAGGAAACCACGCAGGCAGAACCGCAGGCGCAGGACGACGCCCCGGAGGAAGCCGAG
GCAATGGCGGATGAACCCGCCGTGGCGCTGGCCGCTTGA
Translation:
MNAVTQTEARAIENAAPLEMADPSKNLILVALSQLLPRRSKRNARKMPRLSIPELAASIARIGLLQNLIVIA
SADGEHYEVVAGDRRLTALKLLAKKRRIPADYEVPCLLVADGSARTVSLAENLMREQMHPADQFEAFAALVK
EGRPVEDIAADFGVSPLVVQRRLKLAHIAPRLMADYRAGAVTLEQLMALTITDDHAAQEAAFYGAPEWQRSP
SALRARLTEREIDATHALVRFVGLDTYRQAGGGIRRDLFAEGDAGTYLTDAGVLETLVREKLATLAEDVRAE
GWAWVEAVPHLAYEERQAFQNAPRHRREPTAREARRIASLENRLEKIDAELEEACDAEDEAKAEKLEQRRDQ
VIGELQDAEDALQGYAPEVREVAGAIVTIDRNGEAVIHRGLLREAEAKALRTLEKLRRGFGNAEGEADNDEG
HDADDAPKAASLSDRLAQRLSAHRTAALQIEVARHPQVALAALVHGMVQKVLQDSYYGNDQPLGVRVTLQDR
LEGMAPDWPESPAAVALRELQQVAGEGLPQDSAELFAALLTKPQDELVNLLAVCVASTVDVVTPRATPHHPG
EELAQAVGLDMAAWWQPTAEGYFKHVPKAAVLQAVGEYAPEQVSRLAKLKKADIASEAERLANGSGWMPAIF
KAEGAQETTQAEPQAQDDAPEEAEAMADEPAVALAA*
AnnotationID:6076GeneID:6075
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 17:05:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68530385|gb|EAN53347.1|  ParB-like nuclease [Ralstonia metallidurans CH34]
     Length=683
     Score = 1163 bits (3008),  Expect = 0.0
     Identities = 602/684 (88%), Positives = 631/684 (92%), Gaps = 1/684 (0%)

gi|27817694|emb|CAD61121.1|  hypothetical protein [Cupriavidus oxalaticus]
     Length=690
     Score =  915 bits (2366),  Expect = 0.0
     Identities = 481/690 (69%), Positives = 562/690 (81%), Gaps = 6/690 (0%)

gi|17547336|ref|NP_520738.1|  hypothetical protein RSc2617 [Ralstonia solanacearum GMI1000]
     Length=597
     Score =  438 bits (1127),  Expect = 3e-121
     Identities = 235/366 (64%), Positives = 281/366 (76%), Gaps = 5/366 (1%)

gi|67098023|gb|EAM15276.1|  ParB-like nuclease [Burkholderia cenocepacia HI2424]
     Length=709
     Score =  393 bits (1010),  Expect = 1e-107
     Identities = 270/706 (38%), Positives = 384/706 (54%), Gaps = 38/706 (5%)








 
Structural Features:
COG1475, Spo0J, Predicted transcriptional regulators [Transcription]
      Length = 240
      Score = 48.8 bits (115), Expect = 5e-06
      Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 22/190 (11%)

pfam02195, ParBc, ParB-like nuclease domain
     Length = 89
     Score = 48.0 bits (114), Expect = 8e-06
     Identities = 34/96 (35%), Positives = 45/96 (46%), Gaps = 9/96 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:12031




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29271




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6075
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198319
                           emb|CAD61121.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           693
                           69.84
                           81.67
                           12
                           2380.0
     

     
     
198320
                           emb|CAD16324.1|
                           (AL646071) HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           690
                           62.31
                           71.01
                           99
                           2042.0
     

     
     
198321
                           dbj|BAC46878.1|
                           (AP005940) blr1613 [Bradyrhizobium japonicum USDA 110]
                           727
                           16.09
                           22.42
                           458
                           415.0
     

     
     
198322
                           emb|CAA48852.1|
                           (X69105) unnamed protein product [Sinorhizobium meliloti]
                           686
                           12.09
                           16.47
                           508
                           396.0
     

     






      

          
GC ORFID: 49077How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2240927Stop: 2242981

          
Length: 2055


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACGCCGTAACCCAAACCGAAGCCCGCGCCATCGAAAACGCCGCACCGCTGGAAATGGCCGACCCTTCC 
AAGAACCTGATCTTGGTTGCCCTTTCGCAGTTGCTGCCGCGCCGCTCCAAGCGCAACGCCCGCAAGATGCCG 
CGCCTGTCCATCCCCGAACTGGCCGCGAGCATCGCCCGCATCGGCCTGCTGCAAAACCTGATCGTGATCGCA 
TCCGCCGATGGCGAGCATTACGAGGTGGTGGCCGGTGATCGCCGCTTGACCGCCTTGAAGCTGCTGGCGAAG 
AAGCGCCGCATCCCCGCCGACTACGAGGTACCTTGCCTGCTTGTGGCCGATGGCAGTGCCCGCACCGTCAGC 
CTCGCCGAAAACCTGATGCGCGAGCAGATGCACCCCGCCGACCAGTTCGAGGCGTTCGCCGCGCTGGTCAAG 
GAAGGCCGGCCCGTCGAGGACATTGCCGCCGACTTCGGCGTGTCCCCGCTGGTGGTGCAGCGCCGCTTGAAG 
CTGGCCCACATCGCGCCGCGCCTGATGGCCGACTACCGCGCCGGAGCCGTCACGCTGGAACAGTTGATGGCC 
CTGACCATCACCGACGACCACGCCGCACAGGAAGCCGCGTTCTATGGTGCGCCGGAATGGCAGCGCAGCCCG 
TCCGCGCTGCGCGCACGCCTGACCGAGCGGGAAATCGACGCCACGCACGCGCTGGTGCGCTTCGTCGGGCTG 
GACACCTACCGGCAGGCAGGCGGTGGCATCCGCCGCGACCTGTTCGCCGAAGGCGATGCCGGAACCTACCTC 
ACCGACGCCGGGGTGCTGGAAACTCTGGTGCGCGAGAAGCTGGCAACGCTGGCCGAGGACGTGCGCGCCGAG 
GGTTGGGCATGGGTGGAGGCCGTGCCGCATCTGGCCTACGAGGAACGGCAGGCGTTCCAGAACGCACCGCGC 
CACCGCCGCGAGCCGACCGCCCGCGAGGCCCGCCGCATCGCCTCGCTGGAAAACCGCCTTGAAAAGATCGAC 
GCAGAACTGGAAGAAGCCTGCGACGCCGAGGACGAGGCCAAGGCCGAGAAGCTGGAACAGCGGCGCGATCAG 
GTGATCGGGGAACTGCAAGACGCGGAGGACGCCTTACAAGGCTATGCGCCCGAGGTGCGCGAGGTGGCCGGT 
GCCATCGTCACCATCGACCGCAACGGCGAGGCCGTCATCCATCGCGGCCTGCTGCGCGAGGCCGAGGCCAAG 
GCGCTGCGCACGCTGGAAAAGCTGCGGCGCGGTTTCGGCAACGCCGAAGGCGAAGCCGACAACGACGAAGGC 
CACGACGCCGACGACGCGCCCAAGGCCGCGAGCCTGTCCGACCGGCTGGCGCAGCGGTTGAGCGCACACCGC 
ACGGCGGCGCTGCAAATCGAAGTGGCACGGCATCCGCAAGTGGCGCTGGCCGCACTGGTGCATGGCATGGTG 
CAGAAGGTCTTGCAGGACAGCTACTACGGCAACGACCAACCGCTGGGCGTGCGCGTGACGCTGCAAGACCGG 
CTGGAAGGAATGGCCCCGGACTGGCCGGAATCGCCCGCCGCCGTGGCGCTGCGCGAACTGCAACAGGTGGCC 
GGTGAAGGCTTGCCGCAGGACAGCGCCGAACTGTTCGCCGCGCTGCTGACGAAGCCGCAAGACGAACTGGTC 
AATCTGCTGGCCGTGTGCGTGGCTTCCACGGTGGACGTGGTGACGCCTCGCGCCACGCCGCACCACCCCGGC 
GAGGAACTGGCGCAGGCCGTGGGCCTCGACATGGCCGCATGGTGGCAGCCGACCGCAGAAGGCTACTTCAAG 
CACGTTCCCAAGGCGGCAGTCCTGCAAGCCGTGGGCGAGTACGCACCCGAGCAGGTTTCCCGGCTGGCGAAG 
TTGAAGAAGGCCGACATTGCCAGCGAGGCCGAGCGGCTGGCGAACGGCAGCGGATGGATGCCCGCCATCTTC 
AAGGCAGAAGGCGCGCAGGAAACCACGCAGGCAGAACCGCAGGCGCAGGACGACGCCCCGGAGGAAGCCGAG 
GCAATGGCGGATGAACCCGCCGTGGCGCTGGCCGCTTGA