ViewGene

Locus Name:
GeneID:
Location:

GeneID:6073
TrivialName: PA14_31200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31200
PAO1 Ortholog Locus:
Sequence Length:825
Protein Length:274
Start: 2713905
Stop: 2713081
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16325.1| (AL646071) PROBABLE HOMOLOGUE TO GENE 32 PROTEIN OF F PLASMID [Ralstonia solanacearum]
Identities = 233/276 (84%), Positives = 253/276 (91%), Gaps = 2/276 (0%)
Sequence:
ATGCAACTCGCATCCCGTTTCGCTTCCCGTTCCCCGGCACTGCGCAGCGATTACCCGCTGACCGATGACCAA
ATCCGCAGGGTGGCCCCGTCCATCTTCGCGGACGCCCCGCACGAAAGCCGCTCCGAGCGGTACGCCTACATC
CCCACCGCGACCGTGTTGCAGGAACTGCGCGGGGAAGGCTTCGAGCCTTTCATGGTGTGCCAGACCCGCGTG
CGCCACGACGACCGCCGCGACTACACCAAGCACATGATCCGCCTGCGCCACGCCAGCCAGATCAACGGGCGC
GAGGCCAACGAAATCATCCTGCTGAACTCCCATGACGGCACCAGCAGTTACCAGATGCTGGCCGGAATGTTC
CGCTTCGTGTGCAGCAATGGCCTTGTGTGCGGTGACACCGTGGCCGACGTGCGCGTACCCCACAAGGGCGAC
GTAGCCGGGCACGTCATCGAAGGCGCTTACGAAGTCCTGCACGGTTTCGACCGGGCGCAGGAATCGCGCGAT
GCCATGCGCGCCATCACCCTCGACGCCGGGGAATCGGAAGTGTTCGCCCGCGCCGCGCTGGCCTTGAAGTAC
GACGAGGACAAGCCCGCACCCATCACGGAATCGCAAATCCTGATGCCGCGCCGTGGCGACGACGACCGCCGC
GACCTGTGGAGCGTGTTCAACCGCACGCAAGAAAACCTCATCAAAGGTGGCCTGTCCGCCCGCGCCGCCAAT
GGCCGCCGCCAGACCACCCGGCCCGTGCAGGGCATCGACCAGAGCGTGCGCCTGAATCGCGCCCTGTGGCTG
CTGGCCGATGGCCTGCGCCAGCTCAAAGCCTGA
Translation:
MQLASRFASRSPALRSDYPLTDDQIRRVAPSIFADAPHESRSERYAYIPTATVLQELRGEGFEPFMVCQTRV
RHDDRRDYTKHMIRLRHASQINGREANEIILLNSHDGTSSYQMLAGMFRFVCSNGLVCGDTVADVRVPHKGD
VAGHVIEGAYEVLHGFDRAQESRDAMRAITLDAGESEVFARAALALKYDEDKPAPITESQILMPRRGDDDRR
DLWSVFNRTQENLIKGGLSARAANGRRQTTRPVQGIDQSVRLNRALWLLADGLRQLKA*
AnnotationID:6074GeneID:6073
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 17:05:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68530384|gb|EAN53346.1|  Protein of unknown function DUF932 [Ralstonia metallidurans CH34]
     Length=274
     Score =  535 bits (1377),  Expect = 8e-151
     Identities = 268/274 (97%), Positives = 270/274 (98%), Gaps = 0/274 (0%)

gi|72607464|gb|EAO43424.1|  Protein of unknown function DUF932 [Burkholderia ambifaria AMMD]
     Length=274
     Score =  511 bits (1317),  Expect = 7e-144
     Identities = 253/274 (92%), Positives = 262/274 (95%), Gaps = 0/274 (0%)

gi|17547337|ref|NP_520739.1|  PROBABLE HOMOLOGUE TO GENE 32 PROTEIN OF F 
PLASMID [Ralstonia solanacearum GMI1000]
     Length=276
     Score =  468 bits (1204),  Expect = 9e-131
     Identities = 233/276 (84%), Positives = 253/276 (91%), Gaps = 2/276 (0%)

Structural Features:
pfam06067, DUF932, Domain of unknown function (DUF932). Family of Proteobacteria 
proteins with unknown function.
             CD-Length = 274 residues, 100.0% aligned
             Score =  457 bits (1178), Expect = 6e-130
Genomic Context:
Comment:
ReferenceID:12027
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29267
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6073

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198282 emb|CAD16325.1| (AL646071) PROBABLE HOMOLOGUE TO GENE 32 PROTEIN OF F PLASMID [Ralstonia solanacearum] 276 84.42 91.66 2 1206.0
198283 emb|CAD61120.1| (AJ536756) hypothetical protein [Ralstonia oxalatica] 275 84.36 91.63 1 1196.0
198284 gb|AAN62307.1|AF440524_94 (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa] 275 79.63 90.54 1 1149.0
198285 gb|AAN62174.1|AF440523_81 (AF440523) conserved hypothetical protein; associated with oriT region on plasmids [Pseudomonas aeruginosa] 275 77.45 86.90 1 1117.0
198286 emb|CAC86766.1| (AJ344068) hypothetical protein [Pseudomonas putida] 278 61.15 73.02 7 843.0
GC ORFID: 49075How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2240021Stop: 2240845
Length: 825
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCAACTCGCATCCCGTTTCGCTTCCCGTTCCCCGGCACTGCGCAGCGATTACCCGCTGACCGATGACCAA
ATCCGCAGGGTGGCCCCGTCCATCTTCGCGGACGCCCCGCACGAAAGCCGCTCCGAGCGGTACGCCTACATC
CCCACCGCGACCGTGTTGCAGGAACTGCGCGGGGAAGGCTTCGAGCCTTTCATGGTGTGCCAGACCCGCGTG
CGCCACGACGACCGCCGCGACTACACCAAGCACATGATCCGCCTGCGCCACGCCAGCCAGATCAACGGGCGC
GAGGCCAACGAAATCATCCTGCTGAACTCCCATGACGGCACCAGCAGTTACCAGATGCTGGCCGGAATGTTC
CGCTTCGTGTGCAGCAATGGCCTTGTGTGCGGTGACACCGTGGCCGACGTGCGCGTACCCCACAAGGGCGAC
GTAGCCGGGCACGTCATCGAAGGCGCTTACGAAGTCCTGCACGGTTTCGACCGGGCGCAGGAATCGCGCGAT
GCCATGCGCGCCATCACCCTCGACGCCGGGGAATCGGAAGTGTTCGCCCGCGCCGCGCTGGCCTTGAAGTAC
GACGAGGACAAGCCCGCACCCATCACGGAATCGCAAATCCTGATGCCGCGCCGTGGCGACGACGACCGCCGC
GACCTGTGGAGCGTGTTCAACCGCACGCAAGAAAACCTCATCAAAGGTGGCCTGTCCGCCCGCGCCGCCAAT
GGCCGCCGCCAGACCACCCGGCCCGTGCAGGGCATCGACCAGAGCGTGCGCCTGAATCGCGCCCTGTGGCTG
CTGGCCGATGGCCTGCGCCAGCTCAAAGCCTGA