ViewGene
Locus Name:
GeneID:
Location:

GeneID:6071
TrivialName: PA14_31230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31230
PAO1 Ortholog Locus:
Sequence Length:528
Protein Length:175
Start: 2715496
Stop: 2714969
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD61117.1| (AJ536756) hypothetical protein [Ralstonia oxalatica]
Identities = 101/116 (87%), Positives = 105/116 (90%)
Sequence:
GTGGGAGGGAGGCGGTCTTGCTGTTCCCTTCATCGTGCCACGGCGTTCTCGCCGTCAAGGGCTGCGCGCCGA
TGGCGCTTGCGTCCTGGCGGCCGTCTGCGACCCCTGACTGCTTGCGCTGCGCCGTGCCCCGGAAGGGTCGGG
CAATTCCGCCCGGCAACCTTTCAGGAGTTCACCATGAACAACGTACTCATCACTGCCGAGCAGCGCATCGTG
CTGCTGGCCAACGGCCGCGCATCGCTGGAGAACCCGGACTTCGATCCGGCCCCGGTGGTCAAGCTGTTCACG
CCAGACGGCGGCGCGACCTGGCTGCTGACCGAGATTGATCCCGATGACCACGACCACGCTTTCGGTCTTTGC
GACCTGGGCCTGGGCGAGCCGGAAATCGGCTGGGTCAGCTTGAACGAGCTGGCGAGCTTGCGCGGCGGGCTG
GGCCTGCCGATCGAGCGCGACCTGTCTTTCCGGGCAGAGAAACGTCTAAGTGGCTATGCGCGTGATGCGCGG
CTGGCCGGGCGAATCGTCGTCTGA
Translation:
MGGRRSCCSLHRATAFSPSRAARRWRLRPGGRLRPLTACAAPCPGRVGQFRPATFQEFTMNNVLITAEQRIV
LLANGRASLENPDFDPAPVVKLFTPDGGATWLLTEIDPDDHDHAFGLCDLGLGEPEIGWVSLNELASLRGGL
GLPIERDLSFRAEKRLSGYARDARLAGRIVV*
AnnotationID:6072GeneID:6071
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 17:05:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68526149|gb|EAN49123.1|  hypothetical protein RmetDRAFT_0421 [Ralstonia metallidurans CH34]
     Length=151
     Score =  268 bits (684),  Expect = 7e-71
     Identities = 129/145 (88%), Positives = 135/145 (93%), Gaps = 0/145 (0%)

gi|27817690|emb|CAD61117.1|  hypothetical protein [Cupriavidus oxalaticus]
     Length=116
     Score =  206 bits (525),  Expect = 2e-52
     Identities = 101/116 (87%), Positives = 105/116 (90%), Gaps = 0/116 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29263




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6071
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198277
                           emb|CAD61117.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           175
                           57.71
                           60.00
                           59
                           525.0
     

     
     
198278
                           dbj|BAB52494.1|
                           (AP003008) unknown protein [Mesorhizobium loti]
                           233
                           35.62
                           42.48
                           82
                           283.0
     

     
     
198280
                           emb|CAD61127.1|
                           (AJ536756) hypothetical protein [Ralstonia oxalatica]
                           180
                           33.33
                           43.88
                           52
                           258.0
     

     
     
198279
                           emb|CAD31556.1|
                           (AL672113) HYPOTHETICAL PROTEIN [Mesorhizobium loti]
                           204
                           32.84
                           36.27
                           94
                           279.0
     

     
     
198281
                           emb|CAD16316.1|
                           (AL646071) PROBABLE LIPOPROTEIN [Ralstonia solanacearum]
                           216
                           31.48
                           40.27
                           60
                           244.0
     

     






      

          
GC ORFID: 49073How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2238430Stop: 2238957

          
Length: 528


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGGAGGGAGGCGGTCTTGCTGTTCCCTTCATCGTGCCACGGCGTTCTCGCCGTCAAGGGCTGCGCGCCGA 
TGGCGCTTGCGTCCTGGCGGCCGTCTGCGACCCCTGACTGCTTGCGCTGCGCCGTGCCCCGGAAGGGTCGGG 
CAATTCCGCCCGGCAACCTTTCAGGAGTTCACCATGAACAACGTACTCATCACTGCCGAGCAGCGCATCGTG 
CTGCTGGCCAACGGCCGCGCATCGCTGGAGAACCCGGACTTCGATCCGGCCCCGGTGGTCAAGCTGTTCACG 
CCAGACGGCGGCGCGACCTGGCTGCTGACCGAGATTGATCCCGATGACCACGACCACGCTTTCGGTCTTTGC 
GACCTGGGCCTGGGCGAGCCGGAAATCGGCTGGGTCAGCTTGAACGAGCTGGCGAGCTTGCGCGGCGGGCTG 
GGCCTGCCGATCGAGCGCGACCTGTCTTTCCGGGCAGAGAAACGTCTAAGTGGCTATGCGCGTGATGCGCGG 
CTGGCCGGGCGAATCGTCGTCTGA