Modification Date/Time: 2006-04-06 13:01:23
Missense Discrepancy: FALSE
Comments:Homology: gb|AAK65554.1| (AE007275) probable NreB protein [Sinorhizobium meliloti]
Identities = 308/437 (70%), Positives = 360/437 (82%), Gaps = 3/437 (0%)
Sequence:
ATGCTCGCTGTCCTTAAGAACCGCACCTATCGCCACCTGTTCGCTGCGCAAGTGATCGCGCTAGTGGGCACC
GGCCTGATGACTGTGGCGCTGGGCCTACTCGCCTACGAACTGGCGGGCGCGGACGCCGGAGCGGTGCTTGGT
ACGGCGCTGGCTATCAAGATGCTTGCTTATGTCGGCATCGCCCCGATCGCTCAGGCGTTCGCCGACCGCTTG
CCGCGTAGGTCGCTGCTGGTCGCACTTGACCTGATTCGAGCCGCCGTGGCTCTCTGCCTGCCCTTCGTCACC
GAGGTCTGGCAAATCTATCTCCTGATCTTCGTGTTGCAGGCGGCTTCTGCCGGATTCACGCCGACCTTTCAG
GCGACCATCCCGGACATCCTGCCTGACGAGGAGGAGTACACGAAGGCGCTGTCGCTCTCGCGGCTGGCCTAC
GACCTTGAAAGCCTGGTTTCCCCGATGCTGGCGGCTGCGCTGCTGACCATCATCAGCTTCCACAACCTGTTT
GCCGGGACAGTGCTTGGCTTCCTTGTCTCGGCCGCGCTGGTGGTCAGCGTGGTGTTGCCCGCCTCGACACCC
GGCCCACGTCGCGGCATCTGGGAGCGCACCACGCGGGGCGTTCGCCTCTACCTTGCAACGCCGCGGCTGCGG
GGACTTCTGGCAGTTAGCCTTGCCGTGTCAGCAGCAGGCGCGATGGTGATAGTGAATACGGTGGTCATCGTG
AAGGCACGCTTCGGCCTTGGCGAAGCAGAAGTAGCTTGGGCTTTGGCGGCGTTTGGGGGCGGCTCGATGATC
GCTGCATTTGCACTGCCTGGGCTGCTCAACAAATTAGCGGATCGACCTGTCATGGTCACGGGAGCGGCGGTG
CTGGTTATCGGTACGGCCATCGGGGCGCTGATTCCGTCTTATGTTCTGTTGCTTCCACTTTGGCTGGTGATT
GGTTTCGGCTACAGCGTGGCACAAACGCCTTCTGGTCGGCTGCTGCGCCGTTCCGCCCATGCCGAGGATCGG
CCTGCGCTATTCGCTGCACAGTTTGCGCTGTCACATGCCTGCTGGCTGATCTGCTACCCGCTGGCGGGACGC
TTCGGTGCTGCCTTTGGACTGCAATCAACCTTCATCGTTATGTCATTGATTGGCCTTGCCGGTGTAGTGCTT
GCGCTAATGCTTTGGCCTGCCGGCGATCCATCGGATATCGCCCATGACCACCCGGATCTACCGCCGGATCAT
CCGCATATGCGCGAACATTCAGGCCAGGGCCGACACCACCACCTTCTGATCGTGGACGACCTACATCAAGGT
TGGCCACGCATGTAG
Translation:
MLAVLKNRTYRHLFAAQVIALVGTGLMTVALGLLAYELAGADAGAVLGTALAIKMLAYVGIAPIAQAFADRL
PRRSLLVALDLIRAAVALCLPFVTEVWQIYLLIFVLQAASAGFTPTFQATIPDILPDEEEYTKALSLSRLAY
DLESLVSPMLAAALLTIISFHNLFAGTVLGFLVSAALVVSVVLPASTPGPRRGIWERTTRGVRLYLATPRLR
GLLAVSLAVSAAGAMVIVNTVVIVKARFGLGEAEVAWALAAFGGGSMIAAFALPGLLNKLADRPVMVTGAAV
LVIGTAIGALIPSYVLLLPLWLVIGFGYSVAQTPSGRLLRRSAHAEDRPALFAAQFALSHACWLICYPLAGR
FGAAFGLQSTFIVMSLIGLAGVVLALMLWPAGDPSDIAHDHPDLPPDHPHMREHSGQGRHHHLLIVDDLHQG
WPRM*
AnnotationID:6071 GeneID:6070
Modification Date/Time:
2005-09-30 17:05:35
GeneProduct: putative nrbE-like protein
Cell Localization Confidence Code: 5
Functional Category: (27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code: 5
Secondary Functional Category(ies):
Homology: gi|14524031| gb|AAK65554.1| probable NreB protein [Sinorhizobium meliloti 1021]
Length=440
Score = 607 bits (1564), Expect = 3e-172
Identities = 308/437 (70%), Positives = 360/437 (82%), Gaps = 3/437 (0%)
gi|67776672| gb|EAM36311.1| hypothetical protein BproDRAFT_0117 [Polaromonas sp. JS666]
Length=438
Score = 571 bits (1472), Expect = 2e-161
Identities = 286/437 (65%), Positives = 350/437 (80%), Gaps = 3/437 (0%)
gi|71066137| ref|YP_264864.1| MFS Ni2+ efflux pump NreB [Psychrobacter arcticum 273-4]
Length=440
Score = 553 bits (1424), Expect = 6e-156
Identities = 283/437 (64%), Positives = 339/437 (77%), Gaps = 2/437 (0%)
gi|28558906| ref|NP_788166.1| putative nickel resistance protein [Ruegeria sp. PR1b]
Length=439
Score = 542 bits (1396), Expect = 1e-152
Identities = 274/438 (62%), Positives = 335/438 (76%), Gaps = 8/438 (1%)
Structural Features: pfam05977 , DUF894, Bacterial protein of unknown function (DUF894). This family consists of
several bacterial proteins, many of which are annotated as putative transmembrane transport proteins.
CD-Length = 524 residues, only 76.3% aligned
Score = 56.4 bits (136), Expect = 7e-09
COG2814 , AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].
CD-Length = 394 residues, only 41.9% aligned
Score = 50.2 bits (120), Expect = 4e-07