ViewGene

Locus Name:
GeneID:
Location:

GeneID:6070
TrivialName: PA14_31240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31240
PAO1 Ortholog Locus:
Sequence Length:1311
Protein Length:436
Start: 2716943
Stop: 2715633
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK65554.1| (AE007275) probable NreB protein [Sinorhizobium meliloti]
Identities = 308/437 (70%), Positives = 360/437 (82%), Gaps = 3/437 (0%)
Sequence:
ATGCTCGCTGTCCTTAAGAACCGCACCTATCGCCACCTGTTCGCTGCGCAAGTGATCGCGCTAGTGGGCACC
GGCCTGATGACTGTGGCGCTGGGCCTACTCGCCTACGAACTGGCGGGCGCGGACGCCGGAGCGGTGCTTGGT
ACGGCGCTGGCTATCAAGATGCTTGCTTATGTCGGCATCGCCCCGATCGCTCAGGCGTTCGCCGACCGCTTG
CCGCGTAGGTCGCTGCTGGTCGCACTTGACCTGATTCGAGCCGCCGTGGCTCTCTGCCTGCCCTTCGTCACC
GAGGTCTGGCAAATCTATCTCCTGATCTTCGTGTTGCAGGCGGCTTCTGCCGGATTCACGCCGACCTTTCAG
GCGACCATCCCGGACATCCTGCCTGACGAGGAGGAGTACACGAAGGCGCTGTCGCTCTCGCGGCTGGCCTAC
GACCTTGAAAGCCTGGTTTCCCCGATGCTGGCGGCTGCGCTGCTGACCATCATCAGCTTCCACAACCTGTTT
GCCGGGACAGTGCTTGGCTTCCTTGTCTCGGCCGCGCTGGTGGTCAGCGTGGTGTTGCCCGCCTCGACACCC
GGCCCACGTCGCGGCATCTGGGAGCGCACCACGCGGGGCGTTCGCCTCTACCTTGCAACGCCGCGGCTGCGG
GGACTTCTGGCAGTTAGCCTTGCCGTGTCAGCAGCAGGCGCGATGGTGATAGTGAATACGGTGGTCATCGTG
AAGGCACGCTTCGGCCTTGGCGAAGCAGAAGTAGCTTGGGCTTTGGCGGCGTTTGGGGGCGGCTCGATGATC
GCTGCATTTGCACTGCCTGGGCTGCTCAACAAATTAGCGGATCGACCTGTCATGGTCACGGGAGCGGCGGTG
CTGGTTATCGGTACGGCCATCGGGGCGCTGATTCCGTCTTATGTTCTGTTGCTTCCACTTTGGCTGGTGATT
GGTTTCGGCTACAGCGTGGCACAAACGCCTTCTGGTCGGCTGCTGCGCCGTTCCGCCCATGCCGAGGATCGG
CCTGCGCTATTCGCTGCACAGTTTGCGCTGTCACATGCCTGCTGGCTGATCTGCTACCCGCTGGCGGGACGC
TTCGGTGCTGCCTTTGGACTGCAATCAACCTTCATCGTTATGTCATTGATTGGCCTTGCCGGTGTAGTGCTT
GCGCTAATGCTTTGGCCTGCCGGCGATCCATCGGATATCGCCCATGACCACCCGGATCTACCGCCGGATCAT
CCGCATATGCGCGAACATTCAGGCCAGGGCCGACACCACCACCTTCTGATCGTGGACGACCTACATCAAGGT
TGGCCACGCATGTAG
Translation:
MLAVLKNRTYRHLFAAQVIALVGTGLMTVALGLLAYELAGADAGAVLGTALAIKMLAYVGIAPIAQAFADRL
PRRSLLVALDLIRAAVALCLPFVTEVWQIYLLIFVLQAASAGFTPTFQATIPDILPDEEEYTKALSLSRLAY
DLESLVSPMLAAALLTIISFHNLFAGTVLGFLVSAALVVSVVLPASTPGPRRGIWERTTRGVRLYLATPRLR
GLLAVSLAVSAAGAMVIVNTVVIVKARFGLGEAEVAWALAAFGGGSMIAAFALPGLLNKLADRPVMVTGAAV
LVIGTAIGALIPSYVLLLPLWLVIGFGYSVAQTPSGRLLRRSAHAEDRPALFAAQFALSHACWLICYPLAGR
FGAAFGLQSTFIVMSLIGLAGVVLALMLWPAGDPSDIAHDHPDLPPDHPHMREHSGQGRHHHLLIVDDLHQG
WPRM*
AnnotationID:6071GeneID:6070
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 17:05:35
Gene Name:
Confidence Code:3
GeneProduct:putative nrbE-like protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|14524031|gb|AAK65554.1|  probable NreB protein [Sinorhizobium meliloti 1021]
     Length=440
     Score =  607 bits (1564),  Expect = 3e-172
     Identities = 308/437 (70%), Positives = 360/437 (82%), Gaps = 3/437 (0%)

gi|67776672|gb|EAM36311.1|  hypothetical protein BproDRAFT_0117 [Polaromonas sp. JS666]
     Length=438
     Score =  571 bits (1472),  Expect = 2e-161
     Identities = 286/437 (65%), Positives = 350/437 (80%), Gaps = 3/437 (0%)

gi|71066137|ref|YP_264864.1|  MFS Ni2+ efflux pump NreB [Psychrobacter arcticum 273-4]
     Length=440
     Score =  553 bits (1424),  Expect = 6e-156
     Identities = 283/437 (64%), Positives = 339/437 (77%), Gaps = 2/437 (0%)

gi|28558906|ref|NP_788166.1|  putative nickel resistance protein [Ruegeria sp. PR1b]
     Length=439
     Score =  542 bits (1396),  Expect = 1e-152
     Identities = 274/438 (62%), Positives = 335/438 (76%), Gaps = 8/438 (1%)
Structural Features:
pfam05977, DUF894, Bacterial protein of unknown function (DUF894). This family consists of
several bacterial proteins, many of which are annotated as putative transmembrane transport proteins.
             CD-Length = 524 residues, only  76.3% aligned
             Score = 56.4 bits (136), Expect = 7e-09

COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].
             CD-Length = 394 residues, only  41.9% aligned
             Score = 50.2 bits (120), Expect = 4e-07
Genomic Context:
Comment:
ReferenceID:12022
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29261
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6070

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198271 gb|AAK65554.1| (AE007275) probable NreB protein [Sinorhizobium meliloti] 440 70.00 81.81 4 1565.0
198272 gb|AAN05252.1| (AF416331) RC179 [Ruegeria sp. PR1b] 442 61.99 75.79 9 1401.0
198273 gb|AAA72441.1| (L31491) nreB [Plasmid pTOM9] 474 59.28 72.57 38 1394.0
198274 gb|AAK38164.1| (AY030282) NreB-like protein [Legionella pneumophila] 439 56.71 70.84 60 1259.0
198275 gb|AAL37245.1|AF322866_1 (AF322866) NcrA [Hafnia alvei] 473 33.61 41.22 233 713.0
GC ORFID: 49072How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2236983Stop: 2238293
Length: 1311
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCTCGCTGTCCTTAAGAACCGCACCTATCGCCACCTGTTCGCTGCGCAAGTGATCGCGCTAGTGGGCACC
GGCCTGATGACTGTGGCGCTGGGCCTACTCGCCTACGAACTGGCGGGCGCGGACGCCGGAGCGGTGCTTGGT
ACGGCGCTGGCTATCAAGATGCTTGCTTATGTCGGCATCGCCCCGATCGCTCAGGCGTTCGCCGACCGCTTG
CCGCGTAGGTCGCTGCTGGTCGCACTTGACCTGATTCGAGCCGCCGTGGCTCTCTGCCTGCCCTTCGTCACC
GAGGTCTGGCAAATCTATCTCCTGATCTTCGTGTTGCAGGCGGCTTCTGCCGGATTCACGCCGACCTTTCAG
GCGACCATCCCGGACATCCTGCCTGACGAGGAGGAGTACACGAAGGCGCTGTCGCTCTCGCGGCTGGCCTAC
GACCTTGAAAGCCTGGTTTCCCCGATGCTGGCGGCTGCGCTGCTGACCATCATCAGCTTCCACAACCTGTTT
GCCGGGACAGTGCTTGGCTTCCTTGTCTCGGCCGCGCTGGTGGTCAGCGTGGTGTTGCCCGCCTCGACACCC
GGCCCACGTCGCGGCATCTGGGAGCGCACCACGCGGGGCGTTCGCCTCTACCTTGCAACGCCGCGGCTGCGG
GGACTTCTGGCAGTTAGCCTTGCCGTGTCAGCAGCAGGCGCGATGGTGATAGTGAATACGGTGGTCATCGTG
AAGGCACGCTTCGGCCTTGGCGAAGCAGAAGTAGCTTGGGCTTTGGCGGCGTTTGGGGGCGGCTCGATGATC
GCTGCATTTGCACTGCCTGGGCTGCTCAACAAATTAGCGGATCGACCTGTCATGGTCACGGGAGCGGCGGTG
CTGGTTATCGGTACGGCCATCGGGGCGCTGATTCCGTCTTATGTTCTGTTGCTTCCACTTTGGCTGGTGATT
GGTTTCGGCTACAGCGTGGCACAAACGCCTTCTGGTCGGCTGCTGCGCCGTTCCGCCCATGCCGAGGATCGG
CCTGCGCTATTCGCTGCACAGTTTGCGCTGTCACATGCCTGCTGGCTGATCTGCTACCCGCTGGCGGGACGC
TTCGGTGCTGCCTTTGGACTGCAATCAACCTTCATCGTTATGTCATTGATTGGCCTTGCCGGTGTAGTGCTT
GCGCTAATGCTTTGGCCTGCCGGCGATCCATCGGATATCGCCCATGACCACCCGGATCTACCGCCGGATCAT
CCGCATATGCGCGAACATTCAGGCCAGGGCCGACACCACCACCTTCTGATCGTGGACGACCTACATCAAGGT
TGGCCACGCATGTAG