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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG06228.1|AE004710_10 (AE004710) probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
Identities = 567/567 (100%), Positives = 567/567 (100%)
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Sequence:
ATGGGTCTTTGCGGATGTATACGAGGCAAACCCATGACTCAGGAAACCGTCGGCTTCGCCGCGCTCGGTATT
CACCCCAATGTGCTCGCGGCAATCGTCGCCGTAGGCTACGAAGAGCCTTCGCCTATCCAGGCTCAATCGATT
CCGCTGATCCTCGAAGGCCACGACATGATCGGCCAGGCGCAGACCGGTACCGGCAAGACCGCCGCGTTCGCC
CTGCCGCTGCTGTCGCGCATCGACCCGAGCCGTCGCGAGCCGCAGATGCTGGTGCTGGTGCCGACCCGCGAG
CTGGCCCTGCAGGTCGCCACCGCCTGCGAAACCTATTCCAAGCAATTGCCGGGCGTCGGCGTGGTCGCCGTC
TACGGCGGCGCGCCCATGGGGCCGCAACTGAAGGCCCTGCGCCAGGGCGCACAGATCCTCGTCGCTACCCCC
GGCCGCCTGTGCGACCACCTGCGCCGCGACGAGAAGCTGCTGGCCACCGTCCAGCGCCTGGTGCTCGACGAA
GCCGACGAGATGCTCAAGCTCGGCTTCATGGACGACCTGGAAGTGATCTTCGAGGCGCTTCCCGAATCGCGC
CAGACCGTGCTCTTCTCGGCGACCCTGCCGGCGTCCATCCGTGGCATCGCCGAGCGCCACCTGAAGCAGCCC
AAGCACGTCAAGATCGCCGCCAAGACCCAGACCGTGGCGCGCATCGAGCAGGTCCACCTGATGGTCCATGCC
GACCAGAAGGCCGGTTCGATCCAGCGCCTGCTGGAAGTCGAGCAGTTCGACGCGCTGATCGCCTTCGTCCGC
ACCAAGCAGGCCACCCTCGACTACGCCGAATTGCTCGAGCGCCAGGGCTACCGCGCCGCCGCGCTCAACGGC
GACATGCCGCAGGCCCAGCGCGAGCGGGTCATCGAGTCGCTGAAGGACGGTTCGCTGGACATCGTCATCGCC
ACCGACGTTGCTGCCCGGGGCCTGGACGTACCGCGCATCACCCACGTGCTGAACATCGATATGCCCTACGAC
CCCGAGTCCTACGTGCACCGCATCGGCCGTACCGGCCGTGCCGGTCGGGAAGGGCGCGCGCTGTTGCTGGTG
ACTCCGCGCGAGCGGCGCATGCTGCAGGTGATCGAGCGGGTCACCGGGCAGAAGGTCGGCGAAGTCCGCCTG
CCGGATGCCGAGACCGTACTGGAGGCCCGCCTGGCGCGCCTGGCCGCGAGCCTGACGCCCTTGCTCGACAGC
GCCGTCGAGCAGCGCGGCGCGGTGCGCGACGAGCTGTGCCGTCGCCTCGGCTGCGATGCCGAGACCCTGGCC
GCCGCACTGCTGGCGCGCCTGACCGCCGGCAAGGCGCTGGACCTGGAGTCGGTGCGCCGCGAACAGCCGCTG
ACCCCATCGGCACCGCGCGAGCGTGCCGACCGTGGCGAACGCGGCGAGCGTCCGGAGCGCAGCGGCGAGCGT
CGTCCGATGGCGCCGCCGAGCGAAGGCCGTGCCCGCTGCCGCACCGCCCTCGGCGCGCGCGACGGGGTCGCG
GCGAAGAACCTGCTGGGCGCGATCCTCAACGAGGGCGGCCTGTCCCGCGAGGACATCGGCCGCATCCAGATT
CGCGATACCTTCAGCCTGATCGAACTACCCGAGGCCAACCTCGAGCGCCTGCTGACCAAGCTCAAGGACACC
CGCGTCGCCGGCAAGGCCCTGCGCCTGCGCCGCTATCGCGAGGACTGA |
Translation:
MGLCGCIRGKPMTQETVGFAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFA
LPLLSRIDPSRREPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATP
GRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRGIAERHLKQP
KHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQATLDYAELLERQGYRAAALNG
DMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLV
TPRERRMLQVIERVTGQKVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETLA
AALLARLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRARCRTALGARDGVA
AKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKDTRVAGKALRLRRYRED* |
AnnotationID:616 | GeneID:607 |
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Modification Date/Time: |
2005-04-06 18:06:09 |
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GeneProduct: | putative ATP-dependent RNA helicase, DEAD box family |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (24) Transcription, RNA processing and degradation |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN67487.1|AE016375_5 (AE016780) ATP-dependent RNA helicase, DEAD box family [Pseudomonas
putida KT2440]
Length = 559
Score = 832 bits (2148), Expect = 0.0
Identities = 428/559 (76%), Positives = 486/559 (86%), Gaps = 3/559 (0%)
>gb|AAO55295.1| (AE016862) ATP-dependent RNA helicase, DEAD box family [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 562
Score = 827 bits (2136), Expect = 0.0
Identities = 430/564 (76%), Positives = 480/564 (85%), Gaps = 10/564 (1%)
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Structural Features: | COG0513, SrmB, Superfamily II DNA and RNA helicases
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and biogenesis]
CD-Length = 513 residues, 93.6% aligned
Score = 401 bits (1031), Expect = 1e-112
Identities = 198/480 (41%), Positives = 281/480 (58%), Gaps = 11/480 (2%)
cd00268, DEADc, DEAD-box helicases.
CD-Length = 203 residues, 100.0% aligned
Score = 248 bits (635), Expect = 1e-66
Identities = 100/204 (49%), Positives = 140/204 (68%), Gaps = 3/204 (1%)
pfam00270, DEAD, DEAD/DEAH box helicase.
CD-Length = 206 residues, 100.0% aligned
Score = 184 bits (469), Expect = 2e-47
Identities = 97/207 (46%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
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