ViewGene

Locus Name:
GeneID:
Location:

GeneID:607
TrivialName: PA14_27370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27370
PAO1 Ortholog Locus:PA2840
Sequence Length:1704
Protein Length:567
Start: 2373795
Stop: 2375498
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06228.1|AE004710_10 (AE004710) probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1]
Identities = 567/567 (100%), Positives = 567/567 (100%)
Sequence:
ATGGGTCTTTGCGGATGTATACGAGGCAAACCCATGACTCAGGAAACCGTCGGCTTCGCCGCGCTCGGTATT
CACCCCAATGTGCTCGCGGCAATCGTCGCCGTAGGCTACGAAGAGCCTTCGCCTATCCAGGCTCAATCGATT
CCGCTGATCCTCGAAGGCCACGACATGATCGGCCAGGCGCAGACCGGTACCGGCAAGACCGCCGCGTTCGCC
CTGCCGCTGCTGTCGCGCATCGACCCGAGCCGTCGCGAGCCGCAGATGCTGGTGCTGGTGCCGACCCGCGAG
CTGGCCCTGCAGGTCGCCACCGCCTGCGAAACCTATTCCAAGCAATTGCCGGGCGTCGGCGTGGTCGCCGTC
TACGGCGGCGCGCCCATGGGGCCGCAACTGAAGGCCCTGCGCCAGGGCGCACAGATCCTCGTCGCTACCCCC
GGCCGCCTGTGCGACCACCTGCGCCGCGACGAGAAGCTGCTGGCCACCGTCCAGCGCCTGGTGCTCGACGAA
GCCGACGAGATGCTCAAGCTCGGCTTCATGGACGACCTGGAAGTGATCTTCGAGGCGCTTCCCGAATCGCGC
CAGACCGTGCTCTTCTCGGCGACCCTGCCGGCGTCCATCCGTGGCATCGCCGAGCGCCACCTGAAGCAGCCC
AAGCACGTCAAGATCGCCGCCAAGACCCAGACCGTGGCGCGCATCGAGCAGGTCCACCTGATGGTCCATGCC
GACCAGAAGGCCGGTTCGATCCAGCGCCTGCTGGAAGTCGAGCAGTTCGACGCGCTGATCGCCTTCGTCCGC
ACCAAGCAGGCCACCCTCGACTACGCCGAATTGCTCGAGCGCCAGGGCTACCGCGCCGCCGCGCTCAACGGC
GACATGCCGCAGGCCCAGCGCGAGCGGGTCATCGAGTCGCTGAAGGACGGTTCGCTGGACATCGTCATCGCC
ACCGACGTTGCTGCCCGGGGCCTGGACGTACCGCGCATCACCCACGTGCTGAACATCGATATGCCCTACGAC
CCCGAGTCCTACGTGCACCGCATCGGCCGTACCGGCCGTGCCGGTCGGGAAGGGCGCGCGCTGTTGCTGGTG
ACTCCGCGCGAGCGGCGCATGCTGCAGGTGATCGAGCGGGTCACCGGGCAGAAGGTCGGCGAAGTCCGCCTG
CCGGATGCCGAGACCGTACTGGAGGCCCGCCTGGCGCGCCTGGCCGCGAGCCTGACGCCCTTGCTCGACAGC
GCCGTCGAGCAGCGCGGCGCGGTGCGCGACGAGCTGTGCCGTCGCCTCGGCTGCGATGCCGAGACCCTGGCC
GCCGCACTGCTGGCGCGCCTGACCGCCGGCAAGGCGCTGGACCTGGAGTCGGTGCGCCGCGAACAGCCGCTG
ACCCCATCGGCACCGCGCGAGCGTGCCGACCGTGGCGAACGCGGCGAGCGTCCGGAGCGCAGCGGCGAGCGT
CGTCCGATGGCGCCGCCGAGCGAAGGCCGTGCCCGCTGCCGCACCGCCCTCGGCGCGCGCGACGGGGTCGCG
GCGAAGAACCTGCTGGGCGCGATCCTCAACGAGGGCGGCCTGTCCCGCGAGGACATCGGCCGCATCCAGATT
CGCGATACCTTCAGCCTGATCGAACTACCCGAGGCCAACCTCGAGCGCCTGCTGACCAAGCTCAAGGACACC
CGCGTCGCCGGCAAGGCCCTGCGCCTGCGCCGCTATCGCGAGGACTGA
Translation:
MGLCGCIRGKPMTQETVGFAALGIHPNVLAAIVAVGYEEPSPIQAQSIPLILEGHDMIGQAQTGTGKTAAFA
LPLLSRIDPSRREPQMLVLVPTRELALQVATACETYSKQLPGVGVVAVYGGAPMGPQLKALRQGAQILVATP
GRLCDHLRRDEKLLATVQRLVLDEADEMLKLGFMDDLEVIFEALPESRQTVLFSATLPASIRGIAERHLKQP
KHVKIAAKTQTVARIEQVHLMVHADQKAGSIQRLLEVEQFDALIAFVRTKQATLDYAELLERQGYRAAALNG
DMPQAQRERVIESLKDGSLDIVIATDVAARGLDVPRITHVLNIDMPYDPESYVHRIGRTGRAGREGRALLLV
TPRERRMLQVIERVTGQKVGEVRLPDAETVLEARLARLAASLTPLLDSAVEQRGAVRDELCRRLGCDAETLA
AALLARLTAGKALDLESVRREQPLTPSAPRERADRGERGERPERSGERRPMAPPSEGRARCRTALGARDGVA
AKNLLGAILNEGGLSREDIGRIQIRDTFSLIELPEANLERLLTKLKDTRVAGKALRLRRYRED*
AnnotationID:616GeneID:607
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 18:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-dependent RNA helicase, DEAD box family
Cell Localization:()
Synonyms:deaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0513,cd00268,pfam00270
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67487.1|AE016375_5 (AE016780) ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           putida KT2440]
          Length = 559

 Score =  832 bits (2148), Expect = 0.0
 Identities = 428/559 (76%), Positives = 486/559 (86%), Gaps = 3/559 (0%)

>gb|AAO55295.1| (AE016862) ATP-dependent RNA helicase, DEAD box family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 562

 Score =  827 bits (2136), Expect = 0.0
 Identities = 430/564 (76%), Positives = 480/564 (85%), Gaps = 10/564 (1%)

Structural Features:
COG0513, SrmB, Superfamily II DNA and RNA helicases 
[DNA replication, recombination, and repair /
Transcription / Translation, ribosomal structure and biogenesis]
CD-Length = 513 residues,  93.6% aligned
Score =  401 bits (1031), Expect = 1e-112
Identities = 198/480 (41%), Positives = 281/480 (58%), Gaps = 11/480 (2%)

cd00268, DEADc, DEAD-box helicases.
CD-Length = 203 residues, 100.0% aligned
Score =  248 bits (635), Expect = 1e-66
Identities = 100/204 (49%), Positives = 140/204 (68%), Gaps = 3/204 (1%)

pfam00270, DEAD, DEAD/DEAH box helicase.
CD-Length = 206 residues, 100.0% aligned
Score =  184 bits (469), Expect = 2e-47
Identities = 97/207 (46%), Positives = 124/207 (59%), Gaps = 3/207 (1%)
Genomic Context:
Comment:
ReferenceID:1217
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18359
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36217
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:607_cdd.html
URL:
Homologs By Global Alignment
Gene ID:607

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1035 PA2840_tr translation of PA2840 567 99.99 99.99 0 2826.0
40282 gb|AAG06228.1|AE004710_10 (AE004710) probable ATP-dependent RNA helicase [Pseudomonas aeruginosa PAO1] 567 99.99 99.99 0 2826.0
40283 gb|AAN67487.1|AE016375_5 (AE016780) ATP-dependent RNA helicase, DEAD box family [Pseudomonas putida KT2440] 570 75.08 85.26 14 2154.0
40284 gb|AAO55295.1| (AE016862) ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae pv. tomato str. DC3000] 575 74.78 83.47 21 2147.0
40312 gb|AAA23674.1| (M63288) deaD [Escherichia coli] 595 46.72 60.84 52 1198.0
GC ORFID: 43609How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2840Glimmer Score:
Start: 2580132Stop: 2578429
Length: 1704
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2840 translation of PA2840Homolog Bit Score 1093.0
Other Homologs: psyr_15may02_Scaffold8_revised_gene7757 (ORF: BLASTX 826.0), t_PA2840 (ORF: GLIMMER)
GC ORF Sequence
ATGGGTCTTTGCGGATGTATACGAGGCAAACCCATGACTCAGGAAACCGTCGGCTTCGCCGCGCTCGGTATT
CACCCCAATGTGCTCGCGGCAATCGTCGCCGTAGGCTACGAAGAGCCTTCGCCTATCCAGGCTCAATCGATT
CCGCTGATCCTCGAAGGCCACGACATGATCGGCCAGGCGCAGACCGGTACCGGCAAGACCGCCGCGTTCGCC
CTGCCGCTGCTGTCGCGCATCGACCCGAGCCGTCGCGAGCCGCAGATGCTGGTGCTGGTGCCGACCCGCGAG
CTGGCCCTGCAGGTCGCCACCGCCTGCGAAACCTATTCCAAGCAATTGCCGGGCGTCGGCGTGGTCGCCGTC
TACGGCGGCGCGCCCATGGGGCCGCAACTGAAGGCCCTGCGCCAGGGCGCACAGATCCTCGTCGCTACCCCC
GGCCGCCTGTGCGACCACCTGCGCCGCGACGAGAAGCTGCTGGCCACCGTCCAGCGCCTGGTGCTCGACGAA
GCCGACGAGATGCTCAAGCTCGGCTTCATGGACGACCTGGAAGTGATCTTCGAGGCGCTTCCCGAATCGCGC
CAGACCGTGCTCTTCTCGGCGACCCTGCCGGCGTCCATCCGTGGCATCGCCGAGCGCCACCTGAAGCAGCCC
AAGCACGTCAAGATCGCCGCCAAGACCCAGACCGTGGCGCGCATCGAGCAGGTCCACCTGATGGTCCATGCC
GACCAGAAGGCCGGTTCGATCCAGCGCCTGCTGGAAGTCGAGCAGTTCGACGCGCTGATCGCCTTCGTCCGC
ACCAAGCAGGCCACCCTCGACTACGCCGAATTGCTCGAGCGCCAGGGCTACCGCGCCGCCGCGCTCAACGGC
GACATGCCGCAGGCCCAGCGCGAGCGGGTCATCGAGTCGCTGAAGGACGGTTCGCTGGACATCGTCATCGCC
ACCGACGTTGCTGCCCGGGGCCTGGACGTACCGCGCATCACCCACGTGCTGAACATCGATATGCCCTACGAC
CCCGAGTCCTACGTGCACCGCATCGGCCGTACCGGCCGTGCCGGTCGGGAAGGGCGCGCGCTGTTGCTGGTG
ACTCCGCGCGAGCGGCGCATGCTGCAGGTGATCGAGCGGGTCACCGGGCAGAAGGTCGGCGAAGTCCGCCTG
CCGGATGCCGAGACCGTACTGGAGGCCCGCCTGGCGCGCCTGGCCGCGAGCCTGACGCCCTTGCTCGACAGC
GCCGTCGAGCAGCGCGGCGCGGTGCGCGACGAGCTGTGCCGTCGCCTCGGCTGCGATGCCGAGACCCTGGCC
GCCGCACTGCTGGCGCGCCTGACCGCCGGCAAGGCGCTGGACCTGGAGTCGGTGCGCCGCGAACAGCCGCTG
ACCCCATCGGCACCGCGCGAGCGTGCCGACCGTGGCGAACGCGGCGAGCGTCCGGAGCGCAGCGGCGAGCGT
CGTCCGATGGCGCCGCCGAGCGAAGGCCGTGCCCGCTGCCGCACCGCCCTCGGCGCGCGCGACGGGGTCGCG
GCGAAGAACCTGCTGGGCGCGATCCTCAACGAGGGCGGCCTGTCCCGCGAGGACATCGGCCGCATCCAGATT
CGCGATACCTTCAGCCTGATCGAACTACCCGAGGCCAACCTCGAGCGCCTGCTGACCAAGCTCAAGGACACC
CGCGTCGCCGGCAAGGCCCTGCGCCTGCGCCGCTATCGCGAGGACTGA