ViewGene
Locus Name:
GeneID:
Location:

GeneID:6067
TrivialName: PA14_31270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31270
PAO1 Ortholog Locus:
Sequence Length:1164
Protein Length:387
Start: 2720011
Stop: 2718848
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO70785.1| (AE016845) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
Identities = 213/360 (59%), Positives = 259/360 (71%), Gaps = 17/360 (4%)
Sequence:
ATGAGCGCCCGGACGCCCAAGGCCGCCAAAGACGCCGCCCTGCCTGCCGGCTACGCCGGCATCCACGGCGGC
ATCGTGGAACTGCTGGACGCCGCGCGCCAGGCGGCGGCGCGCAGCGTCAATGCGCTGATGACGGCCAGCTAT
TGGGAAATCGGCCGCCGCATCGTGGAGGCCGAGCAACAGGGCAAGCGGCGCGCGGGCTATGGCGAGCAGTTG
ATCGCCCGGCTGTCCGCCGACCTGACCGCGCGCTTCGGGCGCGGTTTCAGCCCGGACAATCTGGAGAACATG
CGGCGGTTCTTCGCCGCCTACCCCCGGCCTATGATTTCCGAGGCACTGTCTCGGAAATCGGGCGACGAGCTG
CCTGCCGAGATTTCCGAGACAGTGTCTCGGAAATTCGCCCTGGCCGAGCTGGCGCAGGTGTTCCCGCTGCCG
TGGTCGGCCTACGTGCGGCTGCTGGCGGTCAAGGATGACCACGCCCGCCGGTTCTACGAGGCTGAGGCGCTG
CGTGGCGGCTGGAGCGTGCGCCAGCTTGACCGGCAGATCGGCAGCCAGTTCTACGAGCGCACGGCCTTGTCC
AAGGACAAGGCGGCGATGCTGGTCAAGGGCGCAGCGCCGAGGCCCGAGGATGCCGTCAGGCCCGACGACGCC
ATCAAAGACCCCTACGTGCTGGAGTTCCTGAACCTCAAAGACGAGTATTCCGAATCCGATTTGGAGGCCGCC
TTGATCCAGCGGCTGGAGGATTTTCTGCTGGAGCTGGGCGAAGGGTTCACCTTCGTCGGGCGGCAGCGGCGC
TTGCGCATCGACCAGACTTGGTATCGGGTGGATCTTCTGTTTTTCCACCGACGGCTGCGCTGCCTGGTCATC
ATCGACTTGAAGCTGGGCAGCCTGTCCCATGCCGACGTGGGCCAGATGCTCATGTATTGCAACTACGCCAAG
GAGCATTGGGCCTATGCCGATGAAAACCCGCCTGTGGGTTTGATCCTGTGCGCCGACAAGGGCCATGCGCTG
GCGCGGTATGCGCTGGAAGGCTTGCCGTCGAAGGTGATGGCGGCGAACTACCGTACCGTGCTGCCGGATGCC
GAGCTGTTGCAGAAGGAATTGGAGACTACGCGGCGCTTGCTGGAATCGCGCACGCCGAAGCAGCCCAAGAAA
CTCCCGCAGTAA
Translation:
MSARTPKAAKDAALPAGYAGIHGGIVELLDAARQAAARSVNALMTASYWEIGRRIVEAEQQGKRRAGYGEQL
IARLSADLTARFGRGFSPDNLENMRRFFAAYPRPMISEALSRKSGDELPAEISETVSRKFALAELAQVFPLP
WSAYVRLLAVKDDHARRFYEAEALRGGWSVRQLDRQIGSQFYERTALSKDKAAMLVKGAAPRPEDAVRPDDA
IKDPYVLEFLNLKDEYSESDLEAALIQRLEDFLLELGEGFTFVGRQRRLRIDQTWYRVDLLFFHRRLRCLVI
IDLKLGSLSHADVGQMLMYCNYAKEHWAYADENPPVGLILCADKGHALARYALEGLPSKVMAANYRTVLPDA
ELLQKELETTRRLLESRTPKQPKKLPQ*
AnnotationID:6068GeneID:6067
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 18:06:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06250, COG4804
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|56552827|ref|YP_163666.1|  hypothetical protein ZMO1931 [Zymomonas mobilis subsp. mobilis ZM4]
     Length=388
     Score =  651 bits (1680),  Expect = 0.0
     Identities = 326/378 (86%), Positives = 354/378 (93%), Gaps = 1/378 (0%)

gi|68525980|gb|EAN48955.1|  Protein of unknown function DUF1016 [Ralstonia metallidurans CH34]
     Length=378
     Score =  583 bits (1503),  Expect = 3e-165
     Identities = 302/385 (78%), Positives = 330/385 (85%), Gaps = 13/385 (3%)

gi|56415261|ref|YP_152336.1|  hypothetical protein SPA3200 [Salmonella enterica subsp. enterica             
serovar Paratyphi A str. ATCC 9150]
     Length=367
     Score =  420 bits (1079),  Expect = 5e-116
     Identities = 213/360 (59%), Positives = 259/360 (71%), Gaps = 17/360 (4%)

gi|29143583|ref|NP_806925.1|  hypothetical protein t3249 [Salmonella enterica subsp. enterica            
serovar Typhi Ty2]
gi|16504397|emb|CAD07849.1|  conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|16762094|ref|NP_457711.1|  hypothetical protein STY3512 [Salmonella enterica subsp. enterica             
serovar Typhi str. CT18]
     Length=367
     Score =  419 bits (1078),  Expect = 6e-116
     Identities = 213/360 (59%), Positives = 259/360 (71%), Gaps = 17/360 (4%)

gi|16766627|ref|NP_462242.1|  putative cytoplasmic protein [Salmonella typhimurium LT2]
     Length=367
     Score =  418 bits (1074),  Expect = 2e-115
     Identities = 214/361 (59%), Positives = 261/361 (72%), Gaps = 19/361 (5%)






 
Structural Features:
pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterised 
proteins found in viruses, archaea and bacteria.
             CD-Length = 320 residues, 100.0% aligned
             Score =  322 bits (827), Expect = 5e-89

COG4804, Uncharacterized conserved protein [Function unknown].
             CD-Length = 159 residues,  99.4% aligned
             Score =  162 bits (410), Expect = 9e-41






   
Genomic Context:






   
Comment:


















    ReferenceID:12017




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6067
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198178
                           gb|AAL22201.1|
                           (AE008853) putative cytoplasmic protein [Salmonella typhimurium LT2]
                           396
                           55.30
                           67.42
                           38
                           1077.0
     

     
     
198176
                           gb|AAO70785.1|
                           (AE016845) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           395
                           55.18
                           67.08
                           36
                           1079.0
     

     
     
198177
                           emb|CAD07849.1|
                           (AL627278) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi]
                           395
                           55.18
                           67.08
                           36
                           1079.0
     

     
     
198180
                           gb|AAC76252.1|
                           (AE000401) orf, hypothetical protein [Escherichia coli K12]
                           392
                           55.10
                           66.83
                           22
                           1047.0
     

     
     
198181
                           gb|AAA58022.1|
                           (U18997) ORF_o375 [Escherichia coli]
                           392
                           55.10
                           66.83
                           22
                           1047.0
     

     






      

          
GC ORFID: 49069How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2233915Stop: 2235078

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCGCCCGGACGCCCAAGGCCGCCAAAGACGCCGCCCTGCCTGCCGGCTACGCCGGCATCCACGGCGGC 
ATCGTGGAACTGCTGGACGCCGCGCGCCAGGCGGCGGCGCGCAGCGTCAATGCGCTGATGACGGCCAGCTAT 
TGGGAAATCGGCCGCCGCATCGTGGAGGCCGAGCAACAGGGCAAGCGGCGCGCGGGCTATGGCGAGCAGTTG 
ATCGCCCGGCTGTCCGCCGACCTGACCGCGCGCTTCGGGCGCGGTTTCAGCCCGGACAATCTGGAGAACATG 
CGGCGGTTCTTCGCCGCCTACCCCCGGCCTATGATTTCCGAGGCACTGTCTCGGAAATCGGGCGACGAGCTG 
CCTGCCGAGATTTCCGAGACAGTGTCTCGGAAATTCGCCCTGGCCGAGCTGGCGCAGGTGTTCCCGCTGCCG 
TGGTCGGCCTACGTGCGGCTGCTGGCGGTCAAGGATGACCACGCCCGCCGGTTCTACGAGGCTGAGGCGCTG 
CGTGGCGGCTGGAGCGTGCGCCAGCTTGACCGGCAGATCGGCAGCCAGTTCTACGAGCGCACGGCCTTGTCC 
AAGGACAAGGCGGCGATGCTGGTCAAGGGCGCAGCGCCGAGGCCCGAGGATGCCGTCAGGCCCGACGACGCC 
ATCAAAGACCCCTACGTGCTGGAGTTCCTGAACCTCAAAGACGAGTATTCCGAATCCGATTTGGAGGCCGCC 
TTGATCCAGCGGCTGGAGGATTTTCTGCTGGAGCTGGGCGAAGGGTTCACCTTCGTCGGGCGGCAGCGGCGC 
TTGCGCATCGACCAGACTTGGTATCGGGTGGATCTTCTGTTTTTCCACCGACGGCTGCGCTGCCTGGTCATC 
ATCGACTTGAAGCTGGGCAGCCTGTCCCATGCCGACGTGGGCCAGATGCTCATGTATTGCAACTACGCCAAG 
GAGCATTGGGCCTATGCCGATGAAAACCCGCCTGTGGGTTTGATCCTGTGCGCCGACAAGGGCCATGCGCTG 
GCGCGGTATGCGCTGGAAGGCTTGCCGTCGAAGGTGATGGCGGCGAACTACCGTACCGTGCTGCCGGATGCC 
GAGCTGTTGCAGAAGGAATTGGAGACTACGCGGCGCTTGCTGGAATCGCGCACGCCGAAGCAGCCCAAGAAA 
CTCCCGCAGTAA