ViewGene
Locus Name:
GeneID:
Location:

GeneID:6066
TrivialName: PA14_31280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31280
PAO1 Ortholog Locus:
Sequence Length:1206
Protein Length:401
Start: 2721213
Stop: 2720008
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD16329.1| (AL646071) PROBABLE INTEGRASE PROTEIN [Ralstonia solanacearum]
Identities = 273/401 (68%), Positives = 316/401 (78%), Gaps = 1/401 (0%)
Sequence:
ATGGCGAAAATCAAACTCACCAAGTCCGTCGTTGACACGGCACAGGCGCGAACCTGCGACGTGGAACTCCGA
GACACGCTCGTTCCAGGCTTCTTGTGCAAGGTTACACCAACCGGGCGCAAGGTATTCATGCTTCAGTACCGC
ACGAACTCCGGCGTGCGGCGCAAGCCATCGCTCGGCCAGTTCGGCGAGCTGACGGTCGAACAGGCCCGGTCG
CTGGCGCAAGACTGGCTGGCCGAAGTCCGGCGCGGCGGCGACCCCGGACTGGACAAGGCGGATGCCCGCAAG
GCCCCAACGGTCAAGGAGCTGTGCGGTCGGTTCATGGATGACCACTCCAAGCCGCACAACAAGCCGAGCACC
CAGGCCGGCTATCAGTACCAGATCGACACCTTCGTCATTCCGGCCTTCGGCACCAAGAAGGTTCACGAAGTC
ACGCGCAACGACATTACCGCGCTGATGAAGCGCATGGAGAAGTCGCCCACCCAGGCCAATCGGGTGCTGTCG
CTCGTGCGCAAGATGTTCAATCTGGCCGAGCTGTGGGGCTACCGGCCGGACGGCTCCAACCCGTGCCGCCAT
GTGCCCAAGTACCCGGAGAAAGGCTCGACCCGGCTCATTACCGATGACCAGATGGTCAAGCTGTTCGCCTAT
CTGGACAAGGCCGAGGCCGAGAACTTGGAGCATCCCATCCTCTTGCTGGCCGTCCGACTGCAATTCGAGTTC
GCCGCGCGCATGTCGGAAATCCTGCTGTTGCAGTGGGATTGGCTCGACCTGCCCAATGGCCGGGTGGTCTGG
CCGGACAGCAAGACCGGCGATATGTCCAAGCCCTTGAGCGAGGAAGCCAAGCGGCGGCTGACGAGCGCCCCC
CGCTATGGCGATTCGCCCTATGTCTGCCCGGCGATCATCGACCACCGCCAGCCCCTCAGCCCCCACACCTAC
TATCAGGGGTGGCGGCGCATCCTCAGCAATGCCGGCGTGCCGAAGGTCGGCACCCACGGCATTCGCCATCGC
TCCGCGACCGACATTGCCAATTCAGGCGTCCCGGTCAAGGTCGGCATGGCGCTGACAGCGCACAAGACCGTG
GCGATGTTCATGCGCTACGTCCACACCGAGGACGATCCGGTGCGCCAAGCCGCCGAACTGGTGGCGACCCGT
CGGCAGACCATCACCGGGAAGCGGCAACCGCAGCCGCAGGAGGCCATGGCATGA
Translation:
MAKIKLTKSVVDTAQARTCDVELRDTLVPGFLCKVTPTGRKVFMLQYRTNSGVRRKPSLGQFGELTVEQARS
LAQDWLAEVRRGGDPGLDKADARKAPTVKELCGRFMDDHSKPHNKPSTQAGYQYQIDTFVIPAFGTKKVHEV
TRNDITALMKRMEKSPTQANRVLSLVRKMFNLAELWGYRPDGSNPCRHVPKYPEKGSTRLITDDQMVKLFAY
LDKAEAENLEHPILLLAVRLQFEFAARMSEILLLQWDWLDLPNGRVVWPDSKTGDMSKPLSEEAKRRLTSAP
RYGDSPYVCPAIIDHRQPLSPHTYYQGWRRILSNAGVPKVGTHGIRHRSATDIANSGVPVKVGMALTAHKTV
AMFMRYVHTEDDPVRQAAELVATRRQTITGKRQPQPQEAMA*
AnnotationID:6067GeneID:6066
AnnotatorUID: danlee
Modification Date/Time: 2005-09-30 18:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative integrase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00801
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|48783287|ref|ZP_00279749.1|  COG0582: Integrase [Burkholderia fungorum LB400]
     Length=400
     Score =  552 bits (1423),  Expect = 7e-156
     Identities = 268/388 (69%), Positives = 317/388 (81%), Gaps = 0/388 (0%)

gi|17547341|ref|NP_520743.1|  PROBABLE INTEGRASE PROTEIN [Ralstonia solanacearum GMI1000]
     Length=400
     Score =  550 bits (1416),  Expect = 4e-155
     Identities = 273/401 (68%), Positives = 316/401 (78%), Gaps = 1/401 (0%)

gi|27817681|emb|CAD61108.1|  putative site specific recombinase [Cupriavidus oxalaticus]
     Length=402
     Score =  543 bits (1400),  Expect = 3e-153
     Identities = 274/401 (68%), Positives = 311/401 (77%), Gaps = 2/401 (0%)

gi|4186110|emb|CAA71790.1|  putative integrase [Ralstonia eutropha]
     Length=401
     Score =  543 bits (1400),  Expect = 3e-153
     Identities = 274/401 (68%), Positives = 311/401 (77%), Gaps = 2/401 (0%)






 
Structural Features:
cd00801, INT_P4, Bacteriophage P4 integrase.
             CD-Length = 357 residues,  91.6% aligned
             Score =  154 bits (391), Expect = 2e-38








   
Genomic Context:






   
Comment:


















    ReferenceID:12015




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29253




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6066
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198172
                           emb|CAD16329.1|
                           (AL646071) PROBABLE INTEGRASE PROTEIN [Ralstonia solanacearum]
                           401
                           68.07
                           78.80
                           1
                           1418.0
     

     
     
198173
                           emb|CAA71790.1|
                           (Y10831) putative integrase [Ralstonia eutropha]
                           403
                           67.99
                           77.17
                           4
                           1402.0
     

     
     
198174
                           emb|CAD61108.1|
                           (AJ536756) putative site specific recombinase [Ralstonia oxalatica]
                           404
                           67.82
                           76.98
                           5
                           1402.0
     

     
     
198175
                           gb|AAM37075.1|
                           (AE011860) phage-related integrase [Xanthomonas axonopodis pv. citri str. 306]
                           401
                           63.84
                           76.05
                           2
                           1329.0
     

     






      

          
GC ORFID: 49068How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2232713Stop: 2233918

          
Length: 1206


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGAAAATCAAACTCACCAAGTCCGTCGTTGACACGGCACAGGCGCGAACCTGCGACGTGGAACTCCGA 
GACACGCTCGTTCCAGGCTTCTTGTGCAAGGTTACACCAACCGGGCGCAAGGTATTCATGCTTCAGTACCGC 
ACGAACTCCGGCGTGCGGCGCAAGCCATCGCTCGGCCAGTTCGGCGAGCTGACGGTCGAACAGGCCCGGTCG 
CTGGCGCAAGACTGGCTGGCCGAAGTCCGGCGCGGCGGCGACCCCGGACTGGACAAGGCGGATGCCCGCAAG 
GCCCCAACGGTCAAGGAGCTGTGCGGTCGGTTCATGGATGACCACTCCAAGCCGCACAACAAGCCGAGCACC 
CAGGCCGGCTATCAGTACCAGATCGACACCTTCGTCATTCCGGCCTTCGGCACCAAGAAGGTTCACGAAGTC 
ACGCGCAACGACATTACCGCGCTGATGAAGCGCATGGAGAAGTCGCCCACCCAGGCCAATCGGGTGCTGTCG 
CTCGTGCGCAAGATGTTCAATCTGGCCGAGCTGTGGGGCTACCGGCCGGACGGCTCCAACCCGTGCCGCCAT 
GTGCCCAAGTACCCGGAGAAAGGCTCGACCCGGCTCATTACCGATGACCAGATGGTCAAGCTGTTCGCCTAT 
CTGGACAAGGCCGAGGCCGAGAACTTGGAGCATCCCATCCTCTTGCTGGCCGTCCGACTGCAATTCGAGTTC 
GCCGCGCGCATGTCGGAAATCCTGCTGTTGCAGTGGGATTGGCTCGACCTGCCCAATGGCCGGGTGGTCTGG 
CCGGACAGCAAGACCGGCGATATGTCCAAGCCCTTGAGCGAGGAAGCCAAGCGGCGGCTGACGAGCGCCCCC 
CGCTATGGCGATTCGCCCTATGTCTGCCCGGCGATCATCGACCACCGCCAGCCCCTCAGCCCCCACACCTAC 
TATCAGGGGTGGCGGCGCATCCTCAGCAATGCCGGCGTGCCGAAGGTCGGCACCCACGGCATTCGCCATCGC 
TCCGCGACCGACATTGCCAATTCAGGCGTCCCGGTCAAGGTCGGCATGGCGCTGACAGCGCACAAGACCGTG 
GCGATGTTCATGCGCTACGTCCACACCGAGGACGATCCGGTGCGCCAAGCCGCCGAACTGGTGGCGACCCGT 
CGGCAGACCATCACCGGGAAGCGGCAACCGCAGCCGCAGGAGGCCATGGCATGA