ViewGene
Locus Name:
GeneID:
Location:

GeneID:6064
TrivialName: PA14_31330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31330
PAO1 Ortholog Locus:
Sequence Length:1500
Protein Length:499
Start: 2724928
Stop: 2723429
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05955.1|AE004685_1 (AE004685) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 492/499 (98%), Positives = 496/499 (99%)
Sequence:
GTGGCCGACGCCACCCTCGACCCGCGCTTCCGGGACAATCCCTATGTGCAAGGCGAACCGCGCATCCGCTTC
TACGCCGGGGCTCCGCTGGCCACCGCGGAGGGTCTCAACCTCGGCAGCCTCTGCGTCATCGACCGGGAACCA
CGCGGGCCGCTGTCCGAGCGCGACATCGCCATGCTCGAGCATTTCGCCCGCCTGGTGATGGCCCGTATCCAT
ACGCTGCGCTCGACCAACTACATCGACGAGCCAACCGGCCTGTACAACCGTCTCCGCCTGCAGGAGGACGTT
TCCCTGCGCCTGCAGCGCGACGGCGCCCTCACCGTGATCGCCGCCGACCTCCTGCCCCTCGCCCTGCTGAAT
ACCATCATCCGTACGCTGGGCTATCCCTTTTCCAACGACCTCATGCTCGAGGCGCGCGACCGCATCCGCGCG
GAACTGCCGGATTTCACCCTCTACAAGATCAGCCCGACGCGCTTCGGACTGCTCCTGCCACGGCAGCAACAG
GAAGAAACCGAGTCGGTCTGCCTCCGCTTGCTGCGGGCCTTCGAAAGCCCCGTCGTATGTCGCGGGATCCCG
ATCAAGGCCATCGTGGGACTCGGCGTACTACCGCTTGCCGACGATCCCCTCGCCGGCGACCAGGACTGGCTG
CGCCTGGTGGTCAGCGCGGCCGACGACGCCCGCGACCGCGGTGTCGGCTGGGCCCGCTACAACCCGCCGCTG
GACCAGGCCCAGCAGCGAGCCTTCACATTGCTGACCTCGCTGTCCCAGGCGATCGGAACCGAAGAAGGCTTC
CATCTGGTGTATCAGCCGAAAATCGACCTGCCGACAGGCAGGTGCACGGGCGTGGAAGCGCTGCTGCGCTGG
CGGCACCCGCAACTCGGCTTCGTCAGCCCCGCCGAATTCGTGCCCCTGGCGGAGAAAACCGCACTGATGCGC
CCCCTCAGCGACTGGGTGCTGCGCCATGCCATGGCCCAACTGGCGCAATGGAACGCACGGAACATCCCGCTC
AGGCTGGCGATCAACGTATCGGCATCGGACATGGAAGACAGCAGCTTCCTGGAAGAGGCCGTCAGACTCGCC
AAAACCTACGACATCGACCTTTCCGCCCTCGAGCTGGAATTCACCGAAAGCGTCCTCATCCGCGACGCCTCG
GCGGTCGGCTCGGTGCTGCTGCGTGCCCGGGAGCTTGGCATGGGCATCGCCGTGGACGACTTCGGCACCGGC
TACAGCAACTGGACCTACCTGCGCGACCTGCCGGTCACCGCCATCAAGCTCGATCAATCATTCACCCGCGAC
CTCGCCGGCTCGCCGAAGGCGCAGAGCGTCACCCAGGCGGTGATCGGCCTGGCCAGCCAGTTGGGTTATCGG
GTGGTCGCGGAAGGCATCGAGACCCACGACACCTTCCACCTGCTGCAGGCCTGGGGCTGCCACGAGGGCCAG
GGCTATCTGATCGCCCAGCCGATGCTGCCGGAGCAACTGGAGGACTGGCTGCGGCGCTAG
Translation:
MADATLDPRFRDNPYVQGEPRIRFYAGAPLATAEGLNLGSLCVIDREPRGPLSERDIAMLEHFARLVMARIH
TLRSTNYIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRA
ELPDFTLYKISPTRFGLLLPRQQQEETESVCLRLLRAFESPVVCRGIPIKAIVGLGVLPLADDPLAGDQDWL
RLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSLSQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRW
RHPQLGFVSPAEFVPLAEKTALMRPLSDWVLRHAMAQLAQWNARNIPLRLAINVSASDMEDSSFLEEAVRLA
KTYDIDLSALELEFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPVTAIKLDQSFTRD
LAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQLEDWLRR*
AnnotationID:6065GeneID:6064
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative EAL domain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00563,COG2200
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57991.1| (AE016872) GAF domain/GGDEF domain/EAL domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 607

 Score =  516 bits (1329), Expect = e-145
 Identities = 268/496 (54%), Positives = 340/496 (68%), Gaps = 4/496 (0%)








 
Structural Features:
pfam00563, EAL, EAL domain.
CD-Length = 247 residues,  98.8% aligned
Score =  256 bits (656), Expect = 3e-69
Identities = 119/245 (48%), Positives = 163/245 (66%), Gaps = 2/245 (0%)

COG2200, Rtn, FOG: EAL domain [Signal transduction mechanisms]
CD-Length = 256 residues,  97.7% aligned
Score =  249 bits (638), Expect = 5e-67
Identities = 113/252 (44%), Positives = 152/252 (60%), Gaps = 2/252 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15903




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29249




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33137




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6064_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6064
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7948
                           PA2567_tr
                           translation of PA2567
                           587
                           83.98
                           84.49
                           88
                           2533.0
     

     
     
198153
                           gb|AAG05955.1|AE004685_1
                           (AE004685) hypothetical protein PA2567 [Pseudomonas aeruginosa PAO1]
                           587
                           83.98
                           84.49
                           88
                           2533.0
     

     
     
198154
                           gb|AAO57991.1|
                           (AE016872) GAF domain/GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           610
                           44.26
                           56.22
                           114
                           1336.0
     

     
     
198155
                           gb|AAM36658.1|
                           (AE011812) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           621
                           34.46
                           48.47
                           125
                           1005.0
     

     
     
198156
                           gb|AAM41067.1|
                           (AE012279) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           620
                           32.58
                           47.58
                           123
                           962.0
     

     






      

          
GC ORFID: 49066How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2228998Stop: 2230497

          
Length: 1500


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2567 translation of PA2567Homolog Bit Score 980.0

          
Other Homologs:  t_PA2567 translation of PA2567 (BLASTP 980), psyr_15may02_Scaffold4_revised_gene5601 related to: gi|15597763|ref|NP_251257.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||B83324 hypothetical protein PA2567 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG05955.1|AE004685_1 (AE004685) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 508)

          
GC ORF Sequence

           
GTGGCCGACGCCACCCTCGACCCGCGCTTCCGGGACAATCCCTATGTGCAAGGCGAACCGCGCATCCGCTTC 
TACGCCGGGGCTCCGCTGGCCACCGCGGAGGGTCTCAACCTCGGCAGCCTCTGCGTCATCGACCGGGAACCA 
CGCGGGCCGCTGTCCGAGCGCGACATCGCCATGCTCGAGCATTTCGCCCGCCTGGTGATGGCCCGTATCCAT 
ACGCTGCGCTCGACCAACTACATCGACGAGCCAACCGGCCTGTACAACCGTCTCCGCCTGCAGGAGGACGTT 
TCCCTGCGCCTGCAGCGCGACGGCGCCCTCACCGTGATCGCCGCCGACCTCCTGCCCCTCGCCCTGCTGAAT 
ACCATCATCCGTACGCTGGGCTATCCCTTTTCCAACGACCTCATGCTCGAGGCGCGCGACCGCATCCGCGCG 
GAACTGCCGGATTTCACCCTCTACAAGATCAGCCCGACGCGCTTCGGACTGCTCCTGCCACGGCAGCAACAG 
GAAGAAACCGAGTCGGTCTGCCTCCGCTTGCTGCGGGCCTTCGAAAGCCCCGTCGTATGTCGCGGGATCCCG 
ATCAAGGCCATCGTGGGACTCGGCGTACTACCGCTTGCCGACGATCCCCTCGCCGGCGACCAGGACTGGCTG 
CGCCTGGTGGTCAGCGCGGCCGACGACGCCCGCGACCGCGGTGTCGGCTGGGCCCGCTACAACCCGCCGCTG 
GACCAGGCCCAGCAGCGAGCCTTCACATTGCTGACCTCGCTGTCCCAGGCGATCGGAACCGAAGAAGGCTTC 
CATCTGGTGTATCAGCCGAAAATCGACCTGCCGACAGGCAGGTGCACGGGCGTGGAAGCGCTGCTGCGCTGG 
CGGCACCCGCAACTCGGCTTCGTCAGCCCCGCCGAATTCGTGCCCCTGGCGGAGAAAACCGCACTGATGCGC 
CCCCTCAGCGACTGGGTGCTGCGCCATGCCATGGCCCAACTGGCGCAATGGAACGCACGGAACATCCCGCTC 
AGGCTGGCGATCAACGTATCGGCATCGGACATGGAAGACAGCAGCTTCCTGGAAGAGGCCGTCAGACTCGCC 
AAAACCTACGACATCGACCTTTCCGCCCTCGAGCTGGAATTCACCGAAAGCGTCCTCATCCGCGACGCCTCG 
GCGGTCGGCTCGGTGCTGCTGCGTGCCCGGGAGCTTGGCATGGGCATCGCCGTGGACGACTTCGGCACCGGC 
TACAGCAACTGGACCTACCTGCGCGACCTGCCGGTCACCGCCATCAAGCTCGATCAATCATTCACCCGCGAC 
CTCGCCGGCTCGCCGAAGGCGCAGAGCGTCACCCAGGCGGTGATCGGCCTGGCCAGCCAGTTGGGTTATCGG 
GTGGTCGCGGAAGGCATCGAGACCCACGACACCTTCCACCTGCTGCAGGCCTGGGGCTGCCACGAGGGCCAG 
GGCTATCTGATCGCCCAGCCGATGCTGCCGGAGCAACTGGAGGACTGGCTGCGGCGCTAG