ViewGene

Locus Name:
GeneID:
Location:

GeneID:6062
TrivialName: PA14_31350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31350
PAO1 Ortholog Locus:
Sequence Length:1038
Protein Length:345
Start: 2726001
Stop: 2727038
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05954.1|AE004684_9 (AE004684) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 344/345 (99%), Positives = 344/345 (99%)
Sequence:
ATGTACGTCGCCTTCGAGCAATTCTTCCTCGAAGATCTGAAACGACCGCAGCGCTCGCTGCTGCGGCCGGAA
GTGATGTTCCAGCTCGACCGGGTCGACCGTTTCGATTTCCCCCGCCAGGAACTGCAGACCCGCAGCGGCAGG
CGCCATGGCTACGACTACCTGGTGATCGCCACGGGTTGCGTGCCGGCTCCGGAACGTATCGAGGGGCTGAAA
GAGGCTGGCGACCATTTCTACCAGTACCAGCCGGCCCGTCGGTTGGCCGAGCGGCTGGCGAGCCTGGAGTCG
GGGCGGGTATTCATCACGGTGAGCTTCCCGAGGACGCCGAATGTGCCCCACCAGTGCGGGATCGCGCCTGTG
GAGACGACCCTGATGCTCGACGACTACTTGCGCCGCCGGGGTGTCCGCGAACGTGTCGAGATCGTCTACACC
TATCCCACCACGGCCCAGTTGCTGCGCAACTGTCTGTTCCTGCAACGACCGACCTGCGAAATCCTGCCGAGC
CTGTTCGAGCAACGCGGCATCCGTTTCCAGCGTGGTTTTACCCTGGCCAGGGTCGACCCGGAGCGGCGCATC
GCCTATTCGGAGGAGGGCGACGAGCAGCCGTTCGACTTGCTCATGGCGACACCGCCGATCCACGCCGTGGAT
GCGGTCAGGGAGTGCGGCCTGTCCCAGGCCGCCGCCGACGAAGGCTGGTTGCCGACGAACCATGAAACCTTG
CAGGTGTATGGCGTCGACCGGGTGTATACCCTGGGCGATACCGTCGATCTGCCGGTGAGCAAGGCCGGTGGG
GCCTGTCACAACCAGGCGCCGGTAGTCGCCAGCAACATCGCTGCCGAGATTCGTCTCGGTAAGCCCTGCGCG
ATCTACGATGGACGAGTCCAGGCTGTCGCGCAGATGGGCCTGAACGCCGGAATGCCGCTCTGGTACGACTAT
CGGCACGACGTAAAGCCGACCCCGCCGACCAAGCTTGGCGGGTTGTTGCGCCAGGGTTTCAATCGCGGCCTG
TACTGGGCCGTAGCCCGTGGAATGCTTTGA
Translation:
MYVAFEQFFLEDLKRPQRSLLRPEVMFQLDRVDRFDFPRQELQTRSGRRHGYDYLVIATGCVPAPERIEGLK
EAGDHFYQYQPARRLAERLASLESGRVFITVSFPRTPNVPHQCGIAPVETTLMLDDYLRRRGVRERVEIVYT
YPTTAQLLRNCLFLQRPTCEILPSLFEQRGIRFQRGFTLARVDPERRIAYSEEGDEQPFDLLMATPPIHAVD
AVRECGLSQAAADEGWLPTNHETLQVYGVDRVYTLGDTVDLPVSKAGGACHNQAPVVASNIAAEIRLGKPCA
IYDGRVQAVAQMGLNAGMPLWYDYRHDVKPTPPTKLGGLLRQGFNRGLYWAVARGML*
AnnotationID:6063GeneID:6062
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 18:06:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0446,COG1252
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|9948626|gb|AAG05954.1|  conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|15597762|ref|NP_251256.1|  hypothetical protein PA2566 [Pseudomonas aeruginosa PAO1]
Length=395

 Score =  706 bits (1821),  Expect = 0.0
 Identities = 344/345 (99%), Positives = 344/345 (99%), Gaps = 0/345 (0%)

gi|84326894|ref|ZP_00974918.1|  COG0446: Uncharacterized NAD(FAD)-dependent dehydrogenases [Pseudomonas 
aeruginosa 2192]
Length=381

 Score =  705 bits (1819),  Expect = 0.0
 Identities = 344/345 (99%), Positives = 344/345 (99%), Gaps = 0/345 (0%)

gi|37955736|gb|AAP22575.1|  putative flavoprotein reductase [Pseudomonas aeruginosa]
Length=395

 Score =  668 bits (1724),  Expect = 0.0
 Identities = 321/345 (93%), Positives = 335/345 (97%), Gaps = 0/345 (0%)

gi|68343007|gb|AAY90613.1|  oxidoreductase, pyridine nucleotide-disulphide family [Pseudomonas 
fluorescens Pf-5]
 gi|70728708|ref|YP_258457.1|  oxidoreductase, pyridine nucleotide-disulphide family [Pseudomonas 
fluorescens Pf-5]
Length=396

 Score =  591 bits (1523),  Expect = 2e-167
 Identities = 282/345 (81%), Positives = 312/345 (90%), Gaps = 0/345 (0%)
Structural Features:
COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
CD-Length = 415 residues,  72.3% aligned
Score = 97.8 bits (242), Expect = 2e-21
Identities = 71/327 (21%), Positives = 101/327 (30%), Gaps = 43/327 (13%)

COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
CD-Length = 405 residues,  79.8% aligned
Score = 78.7 bits (194), Expect = 8e-16
Identities = 80/342 (23%), Positives = 112/342 (32%), Gaps = 53/342 (15%)
Genomic Context:
Comment:
Confirmed frame-shift results in truncation of first 50 aa of PAO1 PA2566.
ReferenceID:12007
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29245
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33127
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:6062_cdd.html
URL:
Homologs By Global Alignment
Gene ID:6062

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7947 PA2566_tr translation of PA2566 395 87.08 87.08 50 1821.0
198152 gb|AAG05954.1|AE004684_9 (AE004684) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 395 87.08 87.08 50 1821.0
GC ORFID: 49064How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2227925Stop: 2226888
Length: 1038
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2566 translation of PA2566Homolog Bit Score 706.0
Other Homologs: t_PA2566 translation of PA2566 (BLASTP 706)
GC ORF Sequence
ATGTACGTCGCCTTCGAGCAATTCTTCCTCGAAGATCTGAAACGACCGCAGCGCTCGCTGCTGCGGCCGGAA
GTGATGTTCCAGCTCGACCGGGTCGACCGTTTCGATTTCCCCCGCCAGGAACTGCAGACCCGCAGCGGCAGG
CGCCATGGCTACGACTACCTGGTGATCGCCACGGGTTGCGTGCCGGCTCCGGAACGTATCGAGGGGCTGAAA
GAGGCTGGCGACCATTTCTACCAGTACCAGCCGGCCCGTCGGTTGGCCGAGCGGCTGGCGAGCCTGGAGTCG
GGGCGGGTATTCATCACGGTGAGCTTCCCGAGGACGCCGAATGTGCCCCACCAGTGCGGGATCGCGCCTGTG
GAGACGACCCTGATGCTCGACGACTACTTGCGCCGCCGGGGTGTCCGCGAACGTGTCGAGATCGTCTACACC
TATCCCACCACGGCCCAGTTGCTGCGCAACTGTCTGTTCCTGCAACGACCGACCTGCGAAATCCTGCCGAGC
CTGTTCGAGCAACGCGGCATCCGTTTCCAGCGTGGTTTTACCCTGGCCAGGGTCGACCCGGAGCGGCGCATC
GCCTATTCGGAGGAGGGCGACGAGCAGCCGTTCGACTTGCTCATGGCGACACCGCCGATCCACGCCGTGGAT
GCGGTCAGGGAGTGCGGCCTGTCCCAGGCCGCCGCCGACGAAGGCTGGTTGCCGACGAACCATGAAACCTTG
CAGGTGTATGGCGTCGACCGGGTGTATACCCTGGGCGATACCGTCGATCTGCCGGTGAGCAAGGCCGGTGGG
GCCTGTCACAACCAGGCGCCGGTAGTCGCCAGCAACATCGCTGCCGAGATTCGTCTCGGTAAGCCCTGCGCG
ATCTACGATGGACGAGTCCAGGCTGTCGCGCAGATGGGCCTGAACGCCGGAATGCCGCTCTGGTACGACTAT
CGGCACGACGTAAAGCCGACCCCGCCGACCAAGCTTGGCGGGTTGTTGCGCCAGGGTTTCAATCGCGGCCTG
TACTGGGCCGTAGCCCGTGGAATGCTTTGA