ViewGene
Locus Name:
GeneID:
Location:

GeneID:605
TrivialName: PA14_58350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58350
PAO1 Ortholog Locus:PA4496
Sequence Length:1614
Protein Length:537
Start: 5195069
Stop: 5196682
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07884.1|AE004863_4 (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 534/537 (99%), Positives = 537/537 (100%)
Sequence:
ATGCGTAGAAACGCCGTCATCCGCTCCGCGATCATGCCCTCGCTGCTCGGCGCAGCGCTGGTCGCCGCCGTT
CCCCAGGCCTTCGCCAGCAACCTGATCTTCTGCTCGGAAGGCAGCCCGGCCGGCTTCGATCCCGCCCAGTAC
ACCACCGGTACCGATTTCGACGCCGCGGCGGAAACCGTCTTCAACCGCCTGACCCAGTTCGAGCGCGGCGGC
ACCAAGGTCCTTCCCGGCCTCGCGGAAAGCTGGGACGTCAGCGACGACGGCAAGACCTATACCTTCCACCTG
CGCAAGGGCGTGAAGTTCCACAGCACCGACTACTTCAAGCCGACCCGCGAATTCAATGCCGACGACGTGCTG
TTCACCTTCGAACGCATGCTCGACAAGGATCATCCGTTCCGCAAGGCCTACCCCACCGAGTTTCCCTACTTC
ACCGACATGGGCCTGGACAAGAACATCGCCAGGATCGAGAAGCTCGACGAGCACACGGTGAAATTCACCCTC
AACGAGGTCGACGCGGCCTTCATCCAGAACCTGGCGATGCCCTTCCCATCGATCCAGTCCGCCGAATACGCC
GCGCAACTGCTCAAGCAGGGCAAGGCCAGCGATATCAACCAGAAGCCGATCGGTACCGGCCCGTTCGTGTTC
AGCCGCTACCAGAAGGATGCGCAGATCCGTTTCAAGGGCAACAAGGACTACTGGAAGCCGGACGAGGTGAAG
GTCGACAACCTGATCTTCGCCATCAACACCGACGCCTCGGTGCGCGCGCAGAAGCTCAAGGCCGGCGAGTGC
CAGATCACCCTCAACCCACGCCCCGCCGACCTCGACGCGCTGAAGAAGGACCCGAACCTGAACCTGCCGTCG
CAGGCCGGCTTCAACCTCGGCTACATCGCCTACAACGTCACCCACAAGCCGTTCGACAAGCTGGAAGTACGC
CAGGCGCTGGACATGGCGGTGAACAAGCAGGCCATCATCGACGCCGTCTACCAGGGCGCCGGCCAGTTGGCG
AGCAACGGCATGCCGCCGACCCAGTGGTCCTACGACGAGACCATCAAGGACGCGCCCTACGATCCGGCCAAG
GCCAGGGAGCTGCTGAAGAAGGCCGGGGTCGCCGAAGGCACCGAGATCACCCTGTGGGCCATGCCGGTACAA
CGCCCCTACAACCCCAACGCCAAGCTGATGGCGGAAATGCTGCAGAACGATTGGGCGAAGATCGGTATCAAG
GCGAAGATCGTCACCTATGAATGGGGCGAATACATCAAGCGCGCCAAGGGCGGCGAGCATGACGCCATGCTG
ATCGGCTGGAGCGGCGACAACGGTGACCCGGACAACTGGCTCGGCACCCTCTACGGCTGCGACGCGGTGGAC
GGCAACAACTTCTCCAAATGGTGCGACGCCGGCTACGACAAGCTGGTCAAGGATGCCAAGCGCACCACCGAC
CAGGGCAAGCGCACCGAGCTGTACAAGCAGGCCCAGCACATCCTCAAGGAACAGGTGCCGATCACCCCGATC
GCCCACTCCACCGTGTACCAGCCGATGCGCAAGACGGTACACGACTTCAGGATCAGTCCCTTCGGCCTGAAC
TCGTTCTACGAGGTCAGCGTCGGCAAGTAG
Translation:
MRRNAVIRSAIMPSLLGAALVAAVPQAFASNLIFCSEGSPAGFDPAQYTTGTDFDAAAETVFNRLTQFERGG
TKVLPGLAESWDVSDDGKTYTFHLRKGVKFHSTDYFKPTREFNADDVLFTFERMLDKDHPFRKAYPTEFPYF
TDMGLDKNIARIEKLDEHTVKFTLNEVDAAFIQNLAMPFPSIQSAEYAAQLLKQGKASDINQKPIGTGPFVF
SRYQKDAQIRFKGNKDYWKPDEVKVDNLIFAINTDASVRAQKLKAGECQITLNPRPADLDALKKDPNLNLPS
QAGFNLGYIAYNVTHKPFDKLEVRQALDMAVNKQAIIDAVYQGAGQLASNGMPPTQWSYDETIKDAPYDPAK
ARELLKKAGVAEGTEITLWAMPVQRPYNPNAKLMAEMLQNDWAKIGIKAKIVTYEWGEYIKRAKGGEHDAML
IGWSGDNGDPDNWLGTLYGCDAVDGNNFSKWCDAGYDKLVKDAKRTTDQGKRTELYKQAQHILKEQVPITPI
AHSTVYQPMRKTVHDFRISPFGLNSFYEVSVGK*
AnnotationID:614GeneID:605
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 06:06:38
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transpor
Cell Localization:()
Synonyms:PA4496
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00496,COG0747,COG4166
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66510.1|AE016280_2 (AE016777) dipeptide ABC transporter, periplasmic peptide-binding
           protein [Pseudomonas putida KT2440]
          Length = 541

 Score =  894 bits (2311), Expect = 0.0
 Identities = 430/541 (79%), Positives = 479/541 (88%), Gaps = 9/541 (1%)

>gb|AAO58006.1| (AE016872) dipeptide ABC transporter, periplasmic dipeptide-binding
           protein, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 540

 Score =  853 bits (2204), Expect = 0.0
 Identities = 409/539 (75%), Positives = 464/539 (86%), Gaps = 9/539 (1%)






 
Structural Features:
pfam00496, SBP_bac_5, Bacterial extracellular solute-binding proteins, 
family 5.
CD-Length = 508 residues,  97.0% aligned
Score =  433 bits (1116), Expect = 4e-122
Identities = 190/508 (37%), Positives = 284/508 (55%), Gaps = 19/508 (3%)

COG0747, DdpA, ABC-type dipeptide transport system, periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 556 residues,  98.7% aligned
Score =  361 bits (927), Expect = 2e-100
Identities = 200/568 (35%), Positives = 280/568 (49%), Gaps = 50/568 (8%)

COG4166, OppA, ABC-type oligopeptide transport system, 
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 562 residues,  94.5% aligned
Score =  241 bits (617), Expect = 3e-64
Identities = 152/543 (27%), Positives = 231/543 (42%), Gaps = 45/543 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1213




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18355




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31539




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:605_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:605
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1029
                           PA4496_tr
                           translation of PA4496
                           537
                           99.44
                           99.99
                           0
                           2837.0
     

     
     
40175
                           gb|AAG07884.1|AE004863_4
                           (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           537
                           99.44
                           99.99
                           0
                           2837.0
     

     
     
1030
                           PA4500_tr
                           translation of PA4500
                           540
                           81.85
                           89.25
                           10
                           2371.0
     

     
     
40176
                           gb|AAG07888.1|AE004863_8
                           (AE004863) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           540
                           81.85
                           89.25
                           10
                           2371.0
     

     
     
40177
                           gb|AAN66510.1|AE016280_2
                           (AE016777) dipeptide ABC transporter, periplasmic peptide-binding protein [Pseudomonas putida KT2440]
                           546
                           78.75
                           87.72
                           14
                           2318.0
     

     






      

          
GC ORFID: 43607How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4496Glimmer Score: 

          
Start: 4458748Stop: 4460361

          
Length: 1614


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4496 translation of PA4496Homolog Bit Score 1097.0

          
Other Homologs:  t_PA4500 (ORF: BLASTX 919.0), psyr_15may02_Scaffold4_revised_gene5611 (ORF: BLASTX 852.0), psyr_15may02_Scaffold4_revised_gene5610 (ORF: BLASTX 785.0), psyr_15may02_Scaffold4_revised_gene5612 (ORF: BLASTX 771.0), t_PA4497 (ORF: BLASTX 512.0), t_PA4502 (ORF: BLASTX 507.0), psyr_15may02_Scaffold2_revised_gene3930 (ORF: BLASTX 500.0), psyr_15may02_Scaffold4_revised_gene5615 (ORF: BLASTX 496.0), t_PA5317 (ORF: BLASTX 462.0), t_PA4496 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAGAAACGCCGTCATCCGCTCCGCGATCATGCCCTCGCTGCTCGGCGCAGCGCTGGTCGCCGCCGTT 
CCCCAGGCCTTCGCCAGCAACCTGATCTTCTGCTCGGAAGGCAGCCCGGCCGGCTTCGATCCCGCCCAGTAC 
ACCACCGGTACCGATTTCGACGCCGCGGCGGAAACCGTCTTCAACCGCCTGACCCAGTTCGAGCGCGGCGGC 
ACCAAGGTCCTTCCCGGCCTCGCGGAAAGCTGGGACGTCAGCGACGACGGCAAGACCTATACCTTCCACCTG 
CGCAAGGGCGTGAAGTTCCACAGCACCGACTACTTCAAGCCGACCCGCGAATTCAATGCCGACGACGTGCTG 
TTCACCTTCGAACGCATGCTCGACAAGGATCATCCGTTCCGCAAGGCCTACCCCACCGAGTTTCCCTACTTC 
ACCGACATGGGCCTGGACAAGAACATCGCCAGGATCGAGAAGCTCGACGAGCACACGGTGAAATTCACCCTC 
AACGAGGTCGACGCGGCCTTCATCCAGAACCTGGCGATGCCCTTCCCATCGATCCAGTCCGCCGAATACGCC 
GCGCAACTGCTCAAGCAGGGCAAGGCCAGCGATATCAACCAGAAGCCGATCGGTACCGGCCCGTTCGTGTTC 
AGCCGCTACCAGAAGGATGCGCAGATCCGTTTCAAGGGCAACAAGGACTACTGGAAGCCGGACGAGGTGAAG 
GTCGACAACCTGATCTTCGCCATCAACACCGACGCCTCGGTGCGCGCGCAGAAGCTCAAGGCCGGCGAGTGC 
CAGATCACCCTCAACCCACGCCCCGCCGACCTCGACGCGCTGAAGAAGGACCCGAACCTGAACCTGCCGTCG 
CAGGCCGGCTTCAACCTCGGCTACATCGCCTACAACGTCACCCACAAGCCGTTCGACAAGCTGGAAGTACGC 
CAGGCGCTGGACATGGCGGTGAACAAGCAGGCCATCATCGACGCCGTCTACCAGGGCGCCGGCCAGTTGGCG 
AGCAACGGCATGCCGCCGACCCAGTGGTCCTACGACGAGACCATCAAGGACGCGCCCTACGATCCGGCCAAG 
GCCAGGGAGCTGCTGAAGAAGGCCGGGGTCGCCGAAGGCACCGAGATCACCCTGTGGGCCATGCCGGTACAA 
CGCCCCTACAACCCCAACGCCAAGCTGATGGCGGAAATGCTGCAGAACGATTGGGCGAAGATCGGTATCAAG 
GCGAAGATCGTCACCTATGAATGGGGCGAATACATCAAGCGCGCCAAGGGCGGCGAGCATGACGCCATGCTG 
ATCGGCTGGAGCGGCGACAACGGTGACCCGGACAACTGGCTCGGCACCCTCTACGGCTGCGACGCGGTGGAC 
GGCAACAACTTCTCCAAATGGTGCGACGCCGGCTACGACAAGCTGGTCAAGGATGCCAAGCGCACCACCGAC 
CAGGGCAAGCGCACCGAGCTGTACAAGCAGGCCCAGCACATCCTCAAGGAACAGGTGCCGATCACCCCGATC 
GCCCACTCCACCGTGTACCAGCCGATGCGCAAGACGGTACACGACTTCAGGATCAGTCCCTTCGGCCTGAAC 
TCGTTCTACGAGGTCAGCGTCGGCAAGTAG