ViewGene
Locus Name:
GeneID:
Location:

GeneID:603
TrivialName: PA14_72010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72010
PAO1 Ortholog Locus:PA5455
Sequence Length:1629
Protein Length:542
Start: 6418319
Stop: 6419947
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08840.1|AE004958_10 (AE004958) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 534/542 (98%), Positives = 538/542 (99%)
Sequence:
ATGAATTTCATCCTTTACTCGGATATCAACGAGCGCTCGATCGGCCACAACCTCGGTCGCCCCGAATACAGC
TACTACTTCGTCCTCAAGGCCTACCGGCCAATCCTCGAATCGCTGGGACAGGTCCACCTGGTACAGAGCACG
GACGAAGTCGACCCGCTCTATCGGCAACTGCATGAACAGGGCGAAGACTGCCTGTTCCTCTCCTTCACCCCG
CCGCACAAGGCGGCGCGGGGCCTGCAATGCCCGATGCTGTGCGTGGTCGCCTGGGAGTTCGAGTCGATTCCC
GACGTGGCGTGGGACGGCGATCCGGCGCAGGACTGGAGCCAGGTCCTGGCCGGCCATGGCGCAGCCATCACC
CTCTCCGAACAGACTGCCCACGCGGTTCGCCGGGTGCTGGGCGAAGATTTTCCGGTACTGGCGCTGCCGACG
CCGATCTGGGAGGAGTTCGCCGCGATCCGCCAGCAAGGCGAGCGGAATCCGGTCAAGTCCGCCGAGACCCTG
CAACTCAAGGGCTGCGTCATCGACAGTCGCCTGCTGGGCCTTTCCGCCGACGGCCTCATCGCACCGATCAGG
GAAGAGACCGAGGATGAGATCCTCGAGGTCCTCCCCGAGACGCCCGCCGAGCCCGAGCCCGAACCGGTCCCT
GAGCCAGAACCAGAGCCAGAGCCGGTTCCTCTCGACTGGAGGCGCCGACTGGTCATCAGCAAGCACTACCTG
CTGCTGTGGTACCGGGAAGCTGTCAGCGACCTGGTACCCATGCCGGTACGCCGCTGGCTGTTCCGTCACCTG
CGCCAGCCGCTGCCGCACCCGCCAACGGCGCTGGAAACGCTGCCGGAGCCATTGCCCCAGGCCATCGAGCCG
ATGCCGCCCGCCGAGCCCGAGCATCCGCCGGCGCTGCTGCCGGACGTCGACCAGCACCAGCAGGTCGTCGTG
GACGGGGTGGTCTACGTCTCGGTGTTCAATCCGCTGGACGGGCGCAAGAACTGGCATCAGCTGATCACCGCC
TTCTGCTGGGCATTCCGCGACACCAGCGATGCCACGCTGGTGCTGAAGATGACCCAGAGCGACCTGACGACC
TACCACGTCGAACTGCTCACCCTGCTTTCCCAACTGTCGCCGTTCGCCTGCCGGGTCATCGCCCTGCACGGC
TATCTCGACGCCGCGGAGTACGCCCGTCTGTACGGAGCCGCCAGCTACTACGTGAACGCCTCGCGCTGCGAG
GGCCTGTGCCTGCCGCTGATGGAGTTCATGTCCTGCGGCACCCCGGCGATCGCTCCGGACCATTCGGCGATG
GCCGACTACATGGACGCCCAGGTGGGCTTCGTGGTCCGCTCCAGCCAGGAGCCCGCGGCCTGGCCGCAGGAT
TCGCGCCGGTTGTACAGCACCCGGCGCTACCGGCCGAGCTGGGAGTCCCTGAAGGAGGCCTACCTGGAGAGC
TACCGGGTGGCCCGGGAACAGCCGGAGCGCTATCGGCAGCTGTCCGCCGCGGCCAACCAACGCATGCGCGGC
TACTGCGCCGGCGACGTGGTCCGCCAGCGCCTGGAACCCTTCCTTTCCGCTCGCAAGGCAACCCCTGCGCCC
GGCGTCGAACTGGCGGCCACCGCCACAGGCAACGTTCCATGCTGA
Translation:
MNFILYSDINERSIGHNLGRPEYSYYFVLKAYRPILESLGQVHLVQSTDEVDPLYRQLHEQGEDCLFLSFTP
PHKAARGLQCPMLCVVAWEFESIPDVAWDGDPAQDWSQVLAGHGAAITLSEQTAHAVRRVLGEDFPVLALPT
PIWEEFAAIRQQGERNPVKSAETLQLKGCVIDSRLLGLSADGLIAPIREETEDEILEVLPETPAEPEPEPVP
EPEPEPEPVPLDWRRRLVISKHYLLLWYREAVSDLVPMPVRRWLFRHLRQPLPHPPTALETLPEPLPQAIEP
MPPAEPEHPPALLPDVDQHQQVVVDGVVYVSVFNPLDGRKNWHQLITAFCWAFRDTSDATLVLKMTQSDLTT
YHVELLTLLSQLSPFACRVIALHGYLDAAEYARLYGAASYYVNASRCEGLCLPLMEFMSCGTPAIAPDHSAM
ADYMDAQVGFVVRSSQEPAAWPQDSRRLYSTRRYRPSWESLKEAYLESYRVAREQPERYRQLSAAANQRMRG
YCAGDVVRQRLEPFLSARKATPAPGVELAATATGNVPC*
AnnotationID:612GeneID:603
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 05:05:32
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyltransferase
Cell Localization:()
Synonyms:PA5455
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00534
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
CD-Length = 172 residues,  84.3% aligned
Score = 54.2 bits (130), Expect = 4e-08 
Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 12/155 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18351




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34642




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:603_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:603
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1026
                           PA5455_tr
                           translation of PA5455
                           542
                           98.52
                           99.26
                           0
                           2842.0
     

     
     
40008
                           gb|AAG08840.1|AE004958_10
                           (AE004958) hypothetical protein PA5455 [Pseudomonas aeruginosa PAO1]
                           542
                           98.52
                           99.26
                           0
                           2842.0
     

     
     
1027
                           PA5456_tr
                           translation of PA5456
                           551
                           36.47
                           48.63
                           127
                           949.0
     

     
     
40009
                           gb|AAG08841.1|AE004958_11
                           (AE004958) hypothetical protein PA5456 [Pseudomonas aeruginosa PAO1]
                           551
                           36.47
                           48.63
                           127
                           949.0
     

     






      

          
GC ORFID: 43605How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5455Glimmer Score: 

          
Start: 5682008Stop: 5683636

          
Length: 1629


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5455 translation of PA5455Homolog Bit Score 1099.0

          
Other Homologs:  t_PA5456 (ORF: BLASTX 217.0), t_PA5455 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTTCATCCTTTACTCGGATATCAACGAGCGCTCGATCGGCCACAACCTCGGTCGCCCCGAATACAGC 
TACTACTTCGTCCTCAAGGCCTACCGGCCAATCCTCGAATCGCTGGGACAGGTCCACCTGGTACAGAGCACG 
GACGAAGTCGACCCGCTCTATCGGCAACTGCATGAACAGGGCGAAGACTGCCTGTTCCTCTCCTTCACCCCG 
CCGCACAAGGCGGCGCGGGGCCTGCAATGCCCGATGCTGTGCGTGGTCGCCTGGGAGTTCGAGTCGATTCCC 
GACGTGGCGTGGGACGGCGATCCGGCGCAGGACTGGAGCCAGGTCCTGGCCGGCCATGGCGCAGCCATCACC 
CTCTCCGAACAGACTGCCCACGCGGTTCGCCGGGTGCTGGGCGAAGATTTTCCGGTACTGGCGCTGCCGACG 
CCGATCTGGGAGGAGTTCGCCGCGATCCGCCAGCAAGGCGAGCGGAATCCGGTCAAGTCCGCCGAGACCCTG 
CAACTCAAGGGCTGCGTCATCGACAGTCGCCTGCTGGGCCTTTCCGCCGACGGCCTCATCGCACCGATCAGG 
GAAGAGACCGAGGATGAGATCCTCGAGGTCCTCCCCGAGACGCCCGCCGAGCCCGAGCCCGAACCGGTCCCT 
GAGCCAGAACCAGAGCCAGAGCCGGTTCCTCTCGACTGGAGGCGCCGACTGGTCATCAGCAAGCACTACCTG 
CTGCTGTGGTACCGGGAAGCTGTCAGCGACCTGGTACCCATGCCGGTACGCCGCTGGCTGTTCCGTCACCTG 
CGCCAGCCGCTGCCGCACCCGCCAACGGCGCTGGAAACGCTGCCGGAGCCATTGCCCCAGGCCATCGAGCCG 
ATGCCGCCCGCCGAGCCCGAGCATCCGCCGGCGCTGCTGCCGGACGTCGACCAGCACCAGCAGGTCGTCGTG 
GACGGGGTGGTCTACGTCTCGGTGTTCAATCCGCTGGACGGGCGCAAGAACTGGCATCAGCTGATCACCGCC 
TTCTGCTGGGCATTCCGCGACACCAGCGATGCCACGCTGGTGCTGAAGATGACCCAGAGCGACCTGACGACC 
TACCACGTCGAACTGCTCACCCTGCTTTCCCAACTGTCGCCGTTCGCCTGCCGGGTCATCGCCCTGCACGGC 
TATCTCGACGCCGCGGAGTACGCCCGTCTGTACGGAGCCGCCAGCTACTACGTGAACGCCTCGCGCTGCGAG 
GGCCTGTGCCTGCCGCTGATGGAGTTCATGTCCTGCGGCACCCCGGCGATCGCTCCGGACCATTCGGCGATG 
GCCGACTACATGGACGCCCAGGTGGGCTTCGTGGTCCGCTCCAGCCAGGAGCCCGCGGCCTGGCCGCAGGAT 
TCGCGCCGGTTGTACAGCACCCGGCGCTACCGGCCGAGCTGGGAGTCCCTGAAGGAGGCCTACCTGGAGAGC 
TACCGGGTGGCCCGGGAACAGCCGGAGCGCTATCGGCAGCTGTCCGCCGCGGCCAACCAACGCATGCGCGGC 
TACTGCGCCGGCGACGTGGTCCGCCAGCGCCTGGAACCCTTCCTTTCCGCTCGCAAGGCAACCCCTGCGCCC 
GGCGTCGAACTGGCGGCCACCGCCACAGGCAACGTTCCATGCTGA