ViewGene
Locus Name:
GeneID:
Location:

GeneID:602
TrivialName: PA14_41750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41750
PAO1 Ortholog Locus:PA1764
Sequence Length:1599
Protein Length:532
Start: 3727831
Stop: 3726233
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05153.1|AE004602_4 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 530/532 (99%), Positives = 531/532 (99%)
Sequence:
ATGAAGATGCGCATTGCGCCGCTCTGGCTGGCGCTGGCAGGGGTGTGCCTGGCCTGGATTCCGCCGGCCGGC
GCGCAGATGGCCAACGACCTGACCATCGGCAACCCGAAAGCCATGGCCCTCGGCAACGCCGTGACCGCCGAC
GAGACCGGCATCGATTCGGTGCACTACAACCCGGCGGCGCTGACCAAGATGAAGGGCCGCCAGGCGACCGTG
AAGCTGCTCACCGGGGTAATGGACATCCGCGCCGGCTTCAAGGCGCCGCCGAACTACGGCGAAGGCACCTTC
GGCCTGCGCGACGACCCGGTCGCCAACAGCCACAGCCGGACCCTGACCCCGACCATGTACCTGCCCGGCCTC
GGCGGCATGACCGACGTGCCGTTGCTGGTGGCGCCGCTGGCCGGGATCTCGATCAACCCGCCGGGTTCCAAG
TTCACCTTCGCCACCAACGTCTACACCCCGCAAGCGCTGGGCTACAGCCGCGATTCCGATAGCGATCCGGCG
CGCTACCAGGGACGCGAGGTGTCGTTGCAGCGGCTCACCTACTTCTCGCCGACCCTGGCCTACCAGGTCAAC
GACGAGCTGTCGGTCGGCCTGTCGGTGGGTTTTTCCCACCAGGCAGTAGCGTTGAACGAGGATTTCCGGGCG
CCGAACCAGTTGCTCGGGCTGTTGCAGCAGACCAAGGAGATCGGTTGCCTGCCGGGAATGCAGGAGATCCTC
GAGGTGTTCTTCAACGTCTGCGGCGGCAACATCGGTCCGTTCCAGAACCTGGCCAATATCGACCTGGACATG
CAGCAGTCGCTGTCGCCCAGCTTCAACCTCGGCGTGCTCTGGGAGCCCACCGACTGGTTCGCCTGGGGCGCG
ACCTACCAGAGCGAGTCGCGGATGAGGCTCAAGGGCAAGTACCGGGTCGACTACGGCCAAGGCTGGCAGGGT
TTCTGGACCGGGGTGCACAAGTCGCTCGGTGGTGCGATCCTCGGCCAGATGTTCCCCTACGGGAACGTCGAT
GAAGAGCATGGCAACGCCACGATGAACATGGTCTACCCGGATGCCTTCTCCACCGGCGTGAAGCTGCGCCCG
TTCAAGAAGTGGCAATTCAACTTCGACCTGAAATGGAACGGCTACAGCGACTGGAACGAGTTCAAGATCGAG
TTCGACCGCGAGCTTGACCTGCTGCGCATCGCCAAGTACCTCGACTCGAAGGACGCCACCAGCCACAGCATC
ACCCTCGACCGCGGCTACCGCGATACCTGGAGCTGGGCCATGGGCGTGCAGTACGACGTCAACGACCGTTTG
CAGCTACGCGCCGGCTACGAATACCGGCCTTCGGCGATCCCCAAGGGCCAGGCGGACATCCTGGTGCCGATC
GGCGATGCCAATCTCTACGGCCTGGGGCTGGGCTACCAGTGGGACAAGGACACGGTGATCGATGTCGGTTTC
AACTACTTCGTAACCAAGCAGAGCGTCAAGGCCGATACCAGCTGCAACCTGAACTGCACCGGGCTCGACAAC
CTGGTGTACAACCCCTACGCGGGACTGGACGTGGACACCACGGTGAAGGCCTATATTTTCGCCATGACCTAC
CGTACGACCTTCTGA
Translation:
MKMRIAPLWLALAGVCLAWIPPAGAQMANDLTIGNPKAMALGNAVTADETGIDSVHYNPAALTKMKGRQATV
KLLTGVMDIRAGFKAPPNYGEGTFGLRDDPVANSHSRTLTPTMYLPGLGGMTDVPLLVAPLAGISINPPGSK
FTFATNVYTPQALGYSRDSDSDPARYQGREVSLQRLTYFSPTLAYQVNDELSVGLSVGFSHQAVALNEDFRA
PNQLLGLLQQTKEIGCLPGMQEILEVFFNVCGGNIGPFQNLANIDLDMQQSLSPSFNLGVLWEPTDWFAWGA
TYQSESRMRLKGKYRVDYGQGWQGFWTGVHKSLGGAILGQMFPYGNVDEEHGNATMNMVYPDAFSTGVKLRP
FKKWQFNFDLKWNGYSDWNEFKIEFDRELDLLRIAKYLDSKDATSHSITLDRGYRDTWSWAMGVQYDVNDRL
QLRAGYEYRPSAIPKGQADILVPIGDANLYGLGLGYQWDKDTVIDVGFNYFVTKQSVKADTSCNLNCTGLDN
LVYNPYAGLDVDTTVKAYIFAMTYRTTF*
AnnotationID:611GeneID:602
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 08:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein transport protein
Cell Localization:()
Synonyms:PA1764
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03349,COG2067
Secondary Functional Category(ies):fatty acid and phospholipid metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). 
CD-Length = 425 residues, 100.0% aligned
Score =  313 bits (803), Expect = 3e-86
Identities = 129/519 (24%), Positives = 191/519 (36%), Gaps = 94/519 (18%)

COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]
CD-Length = 440 residues, 100.0% aligned
Score =  310 bits (796), Expect = 2e-85
Identities = 120/532 (22%), Positives = 186/532 (34%), Gaps = 92/532 (17%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1207




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18349




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37136




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:602_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:602
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1025
                           PA1764_tr
                           translation of PA1764
                           532
                           99.62
                           99.81
                           0
                           2842.0
     

     
     
40007
                           gb|AAG05153.1|AE004602_4
                           (AE004602) hypothetical protein PA1764 [Pseudomonas aeruginosa PAO1]
                           532
                           99.62
                           99.81
                           0
                           2842.0
     

     






      

          
GC ORFID: 43604How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1764Glimmer Score: 

          
Start: 1226078Stop: 1227676

          
Length: 1599


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1764 translation of PA1764Homolog Bit Score 1099.0

          
Other Homologs:  t_PA1764 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGATGCGCATTGCGCCGCTCTGGCTGGCGCTGGCAGGGGTGTGCCTGGCCTGGATTCCGCCGGCCGGC 
GCGCAGATGGCCAACGACCTGACCATCGGCAACCCGAAAGCCATGGCCCTCGGCAACGCCGTGACCGCCGAC 
GAGACCGGCATCGATTCGGTGCACTACAACCCGGCGGCGCTGACCAAGATGAAGGGCCGCCAGGCGACCGTG 
AAGCTGCTCACCGGGGTAATGGACATCCGCGCCGGCTTCAAGGCGCCGCCGAACTACGGCGAAGGCACCTTC 
GGCCTGCGCGACGACCCGGTCGCCAACAGCCACAGCCGGACCCTGACCCCGACCATGTACCTGCCCGGCCTC 
GGCGGCATGACCGACGTGCCGTTGCTGGTGGCGCCGCTGGCCGGGATCTCGATCAACCCGCCGGGTTCCAAG 
TTCACCTTCGCCACCAACGTCTACACCCCGCAAGCGCTGGGCTACAGCCGCGATTCCGATAGCGATCCGGCG 
CGCTACCAGGGACGCGAGGTGTCGTTGCAGCGGCTCACCTACTTCTCGCCGACCCTGGCCTACCAGGTCAAC 
GACGAGCTGTCGGTCGGCCTGTCGGTGGGTTTTTCCCACCAGGCAGTAGCGTTGAACGAGGATTTCCGGGCG 
CCGAACCAGTTGCTCGGGCTGTTGCAGCAGACCAAGGAGATCGGTTGCCTGCCGGGAATGCAGGAGATCCTC 
GAGGTGTTCTTCAACGTCTGCGGCGGCAACATCGGTCCGTTCCAGAACCTGGCCAATATCGACCTGGACATG 
CAGCAGTCGCTGTCGCCCAGCTTCAACCTCGGCGTGCTCTGGGAGCCCACCGACTGGTTCGCCTGGGGCGCG 
ACCTACCAGAGCGAGTCGCGGATGAGGCTCAAGGGCAAGTACCGGGTCGACTACGGCCAAGGCTGGCAGGGT 
TTCTGGACCGGGGTGCACAAGTCGCTCGGTGGTGCGATCCTCGGCCAGATGTTCCCCTACGGGAACGTCGAT 
GAAGAGCATGGCAACGCCACGATGAACATGGTCTACCCGGATGCCTTCTCCACCGGCGTGAAGCTGCGCCCG 
TTCAAGAAGTGGCAATTCAACTTCGACCTGAAATGGAACGGCTACAGCGACTGGAACGAGTTCAAGATCGAG 
TTCGACCGCGAGCTTGACCTGCTGCGCATCGCCAAGTACCTCGACTCGAAGGACGCCACCAGCCACAGCATC 
ACCCTCGACCGCGGCTACCGCGATACCTGGAGCTGGGCCATGGGCGTGCAGTACGACGTCAACGACCGTTTG 
CAGCTACGCGCCGGCTACGAATACCGGCCTTCGGCGATCCCCAAGGGCCAGGCGGACATCCTGGTGCCGATC 
GGCGATGCCAATCTCTACGGCCTGGGGCTGGGCTACCAGTGGGACAAGGACACGGTGATCGATGTCGGTTTC 
AACTACTTCGTAACCAAGCAGAGCGTCAAGGCCGATACCAGCTGCAACCTGAACTGCACCGGGCTCGACAAC 
CTGGTGTACAACCCCTACGCGGGACTGGACGTGGACACCACGGTGAAGGCCTATATTTTCGCCATGACCTAC 
CGTACGACCTTCTGA