ViewGene

Locus Name:
GeneID:
Location:

GeneID:6017
TrivialName: PA14_32820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32820
PAO1 Ortholog Locus:
Sequence Length:588
Protein Length:195
Start: 2868300
Stop: 2868887
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05850.1|AE004673_10 (AE004673) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 81/90 (90%), Positives = 84/90 (93%)
Sequence:
TTGACCCAGGCTTACGAGGATGCCGGCTGGCAAGGTTCGGTCACAGCTGGTGTCGAGGGCGGTAGGTTCGCT
GCGGAACTTGTTGGCGTTCTGACGGCAGTGAAAGGTGGTGCGCAGATAACCGCCAAGTTGCCAACAGCAGCC
AAGAACCTGGTCAACGCGATTGCGGAGTCACCTGTTTCCGGTAGTATGAGTTCGCAGCTCGGGGCAGTGGGG
GATTTGGGTAAGCTGGGTGGGGGGCCAAAAGGATCAGCAACGGCTCTTCAGAATTTTGGTGGACGCACTGCT
AATGACCTTGTTGCTGCTGCAACTGAACCAATCAACAAGGAAGGTTTGACTAAGGCTGCTAGAGCCCTTACC
AAACACGCATCCGGGCAAAGAGCGACAGGAACATTTCCAAAGCTTACTGGCGGAATTGAAAATCAAAATTCA
GTGGCTCAGAAGATTGTTGATGAAATAGTCACTGATCCGAAAGCTGTGTACACAAACCTTAGTCGAGGAGGG
CTTGAAATTCGAGTTCCTGATGGTCGGGGCATACGCTATAACAGTGATGGCTCCTTCTCTACATTCCTTGAT
CCGAAACTGTGA
Translation:
MTQAYEDAGWQGSVTAGVEGGRFAAELVGVLTAVKGGAQITAKLPTAAKNLVNAIAESPVSGSMSSQLGAVG
DLGKLGGGPKGSATALQNFGGRTANDLVAAATEPINKEGLTKAARALTKHASGQRATGTFPKLTGGIENQNS
VAQKIVDEIVTDPKAVYTNLSRGGLEIRVPDGRGIRYNSDGSFSTFLDPKL*
AnnotationID:6018GeneID:6017
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 16:04:17
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:15865
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29155
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6017

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198035 emb|CAE13425.1| (BX571862) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 227 31.71 43.17 53 277.0
7939 PA2462_tr translation of PA2462 5666 1.88 1.99 5510 418.0
198034 gb|AAG05850.1|AE004673_10 (AE004673) hypothetical protein PA2462 [Pseudomonas aeruginosa PAO1] 5666 1.88 1.99 5510 418.0
GC ORFID: 49019How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2085624Stop: 2085037
Length: 588
Start Codon: TTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2462 translation of PA2462Homolog Bit Score 159.0
Other Homologs: t_PA2462 translation of PA2462 (BLASTP 159)
GC ORF Sequence
TTGACCCAGGCTTACGAGGATGCCGGCTGGCAAGGTTCGGTCACAGCTGGTGTCGAGGGCGGTAGGTTCGCT
GCGGAACTTGTTGGCGTTCTGACGGCAGTGAAAGGTGGTGCGCAGATAACCGCCAAGTTGCCAACAGCAGCC
AAGAACCTGGTCAACGCGATTGCGGAGTCACCTGTTTCCGGTAGTATGAGTTCGCAGCTCGGGGCAGTGGGG
GATTTGGGTAAGCTGGGTGGGGGGCCAAAAGGATCAGCAACGGCTCTTCAGAATTTTGGTGGACGCACTGCT
AATGACCTTGTTGCTGCTGCAACTGAACCAATCAACAAGGAAGGTTTGACTAAGGCTGCTAGAGCCCTTACC
AAACACGCATCCGGGCAAAGAGCGACAGGAACATTTCCAAAGCTTACTGGCGGAATTGAAAATCAAAATTCA
GTGGCTCAGAAGATTGTTGATGAAATAGTCACTGATCCGAAAGCTGTGTACACAAACCTTAGTCGAGGAGGG
CTTGAAATTCGAGTTCCTGATGGTCGGGGCATACGCTATAACAGTGATGGCTCCTTCTCTACATTCCTTGAT
CCGAAACTGTGA