ViewGene

Locus Name:
GeneID:
Location:

GeneID:601
TrivialName: PA14_01300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01300
PAO1 Ortholog Locus:PA0106
Sequence Length:1593
Protein Length:530
Start: 126427
Stop: 128019
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03496.1|AE004449_5 (AE004449) cytochrome c oxidase, subunit I [Pseudomonas aeruginosa PAO1]
Identities = 530/530 (100%), Positives = 530/530 (100%)
Sequence:
ATGAGTGCTGTGATCGATACGCCCGACCACCATGCCGGCGACCACCACCACGGACCGGCCAAGGGCCTGATG
CGCTGGGTGCTGACGACCAACCACAAGGACATCGGCACCCTCTACCTGTGGTTCAGCTTCATGATGTTCCTG
CTCGGCGGCTCGATGGCCATGGTGATCCGCGCCGAGCTGTTCCAGCCCGGCCTGCAGATCGTCGAGCCGGCG
TTCTTCAACCAGATGACCACCATGCACGGCCTGATCATGGTCTTCGGCGCGGTGATGCCGGCCTTCGTCGGC
CTGGCCAACTGGATGATCCCGCTGATGATCGGCGCGCCGGACATGGCCCTGCCGCGGATGAACAACTTCAGC
TTCTGGCTGCTGCCGGCGGCCTTCGGCCTGCTGGTCAGCACCCTGTTCATGCCCGGCGGCGGTCCCAACTTC
GGCTGGACCTTCTACGCGCCGCTGTCGACCACCTTCGCCCCGCACAGCGTGACCTTCTTCATCTTCGCCATC
CACCTGGCCGGGATCAGCTCGATCATGGGCGCGATCAACGTGATCGCCACCATCCTCAACCTGCGCGCCCCG
GGCATGACCCTGATGAAGATGCCGCTGTTCGTCTGGACCTGGCTGATCACCGCGTTCCTGTTGATCGCGGTG
ATGCCGGTGCTGGCCGGCGTGGTGACCATGATGCTGATGGACATCCACTTCGGCACCAGCTTCTTCAGCGCC
GCCGGCGGCGGCGACCCGGTGCTGTTCCAGCACGTGTTCTGGTTCTTCGGCCACCCCGAGGTGTACATCATG
ATCCTGCCCGCCTTCGGTGCGGTCAGTGCGATCATCCCGACCTTCGCGCGCAAGCCGCTGTTCGGCTACACC
TCGATGGTCTACGCCACCGCCAGCATCGCCTTCCTCTCCTTCGTGGTCTGGGCGCACCACATGTTCGTGGTC
GGCATCCCGGTCACCGGCGAGCTGTTCTTCATGTACGCCACCATGCTGATCGCGGTGCCCACCGGGGTGAAG
GTGTTCAACTGGGTGACCACCATGTGGGAGGGTTCGCTGACCTTCGAGACGCCGATGCTGTTCGCCGTGGCC
TTCGTCATCCTGTTCACCATCGGCGGCTTCTCCGGACTGATGCTGGCGATCGCCCCGGCGGACTTCCAGTAC
CACGACACCTACTTCGTGGTCGCCCACTTCCACTACGTGCTGGTGCCCGGCGCGATCTTCGGCATCTTCGCC
TCGGCCTACTACTGGCTGCCGAAGTGGACCGGCCACATGTACGACGAGACCCTCGGCAAGCTGCACTTCTGG
ATGAGCTTCATCGGCATGAACCTGGCGTTCTTCCCGATGCACTTCGTCGGCCTCGCCGGCATGCCGCGACGG
ATCCCCGACTACAACCTGCAGTTCGCCGACTTCAACATGGTCTCGTCGATCGGCGCCTTCATGTTCGGCACC
ACCCAGCTGCTGTTCCTGTTCATCGTCATCAAGTGCATCCGCGGCGGCAAGCCGGCCCCTGCCAAGCCCTGG
GACGGCGCCGAGGGCCTGGAGTGGAGCATCCCTTCGCCGGCGCCCTACCACACCTTCAGCACCCCGCCCGAG
GTCAAGTGA
Translation:
MSAVIDTPDHHAGDHHHGPAKGLMRWVLTTNHKDIGTLYLWFSFMMFLLGGSMAMVIRAELFQPGLQIVEPA
FFNQMTTMHGLIMVFGAVMPAFVGLANWMIPLMIGAPDMALPRMNNFSFWLLPAAFGLLVSTLFMPGGGPNF
GWTFYAPLSTTFAPHSVTFFIFAIHLAGISSIMGAINVIATILNLRAPGMTLMKMPLFVWTWLITAFLLIAV
MPVLAGVVTMMLMDIHFGTSFFSAAGGGDPVLFQHVFWFFGHPEVYIMILPAFGAVSAIIPTFARKPLFGYT
SMVYATASIAFLSFVVWAHHMFVVGIPVTGELFFMYATMLIAVPTGVKVFNWVTTMWEGSLTFETPMLFAVA
FVILFTIGGFSGLMLAIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGHMYDETLGKLHFW
MSFIGMNLAFFPMHFVGLAGMPRRIPDYNLQFADFNMVSSIGAFMFGTTQLLFLFIVIKCIRGGKPAPAKPW
DGAEGLEWSIPSPAPYHTFSTPPEVK*
AnnotationID:610GeneID:601
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:50
Gene Name:coxA
Confidence Code:2
GeneProduct:cytochrome c oxidase, subunit I
Cell Localization:()
Synonyms:ctaD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0843,pfam00115
Secondary Functional Category(ies):
EC Number:1.9.3.1
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65738.1|AE016200_2 (AE016774) cytochrome c oxidase, subunit I [Pseudomonas putida
           KT2440]
          Length = 529

 Score = 1039 bits (2686), Expect = 0.0
 Identities = 500/531 (94%), Positives = 513/531 (96%), Gaps = 3/531 (0%)

>gb|AAN57567.1|AE015892_7 (AE015892) cytochrome c oxidase, subunit I [Shewanella oneidensis
           MR-1]
          Length = 530

 Score =  907 bits (2344), Expect = 0.0
 Identities = 417/517 (80%), Positives = 467/517 (90%)

>gb|AAO07513.1|AE016810_16 (AE016810) Heme/copper-type cytochrome/quinol oxidase, subunit 1
           [Vibrio vulnificus CMCP6]
          Length = 543

 Score =  867 bits (2239), Expect = 0.0
 Identities = 401/528 (75%), Positives = 457/528 (86%), Gaps = 4/528 (0%)
Structural Features:
COG0843, CyoB, Heme/copper-type cytochrome/quinol oxidases, subunit 1 
[Energy production and conversion]
CD-Length = 566 residues,  90.6% aligned
Score =  545 bits (1405), Expect = 5e-156
Identities = 284/514 (55%), Positives = 365/514 (71%), Gaps = 6/514 (1%)

pfam00115, COX1, Cytochrome C and Quinol oxidase polypeptide I.
CD-Length = 458 residues,  99.8% aligned
Score =  485 bits (1251), Expect = 5e-138
Identities = 272/458 (59%), Positives = 339/458 (74%), Gaps = 6/458 (1%)
Genomic Context:
Comment:
ReferenceID:1205
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18347
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33486
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:601_cdd.html
URL:
ReferenceID:35505
Author/Investigator(s): Schmetterer G, Valladares A, Pils D, Steinbach S, Pacher M, Muro-Pastor AM, Flores E, Herrero A.
Title: The coxBAC operon encodes a cytochrome c oxidase required for heterotrophic growth in the cyanobacterium Anabaena variabilis strain ATCC 29413.
PubMed: 11591688
MedLine:
Source:
J Bacteriol. 2001 Nov;183(21):6429-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11591688
ReferenceID:35507
Author/Investigator(s): Alge D, Schmetterer G, Peschek GA.
Title: The gene encoding cytochrome-c oxidase subunit I from Synechocystis PCC6803.
PubMed: 8125290
MedLine:
Source:
Gene. 1994 Jan 28;138(1-2):127-32.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8125290
ReferenceID:35508
Author/Investigator(s): Gabel C, Maier RJ.
Title: Nucleotide sequence of the coxA gene encoding subunit I of cytochrome aa3 of Bradyrhizobium japonicum.
PubMed: 2172930
MedLine:
Source:
Nucleic Acids Res. 1990 Oct 25;18(20):6143.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2172930
ReferenceID:35511
Author/Investigator(s): Shapleigh JP, Gennis RB.
Title: Cloning, sequencing and deletion from the chromosome of the gene encoding subunit I of the aa3-type cytochrome c oxidase of Rhodobacter sphaeroides.
PubMed: 1313140
MedLine:
Source:
Mol Microbiol. 1992 Mar;6(5):635-42.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1313140
Homologs By Global Alignment
Gene ID:601

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1024 PA0106_tr translation of PA0106 530 99.99 99.99 0 2846.0
39851 gb|AAG03496.1|AE004449_5 (AE004449) cytochrome c oxidase, subunit I [Pseudomonas aeruginosa PAO1] 530 99.99 99.99 0 2846.0
39852 gb|AAN65738.1|AE016200_2 (AE016774) cytochrome c oxidase, subunit I [Pseudomonas putida KT2440] 531 94.16 96.61 3 2690.0
39853 gb|AAN57567.1|AE015892_7 (AE015892) cytochrome c oxidase, subunit I [Shewanella oneidensis MR-1] 532 79.32 88.90 4 2344.0
39855 dbj|BAC97141.1| (AP005348) cytochrome c oxidase, subunit I [Vibrio vulnificus YJ016] 547 73.30 83.54 21 2241.0
GC ORFID: 43603How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0106Glimmer Score:
Start: 5927766Stop: 5929358
Length: 1593
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0106 translation of PA0106Homolog Bit Score 1100.0
Other Homologs: t_PA0106 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTGCTGTGATCGATACGCCCGACCACCATGCCGGCGACCACCACCACGGACCGGCCAAGGGCCTGATG
CGCTGGGTGCTGACGACCAACCACAAGGACATCGGCACCCTCTACCTGTGGTTCAGCTTCATGATGTTCCTG
CTCGGCGGCTCGATGGCCATGGTGATCCGCGCCGAGCTGTTCCAGCCCGGCCTGCAGATCGTCGAGCCGGCG
TTCTTCAACCAGATGACCACCATGCACGGCCTGATCATGGTCTTCGGCGCGGTGATGCCGGCCTTCGTCGGC
CTGGCCAACTGGATGATCCCGCTGATGATCGGCGCGCCGGACATGGCCCTGCCGCGGATGAACAACTTCAGC
TTCTGGCTGCTGCCGGCGGCCTTCGGCCTGCTGGTCAGCACCCTGTTCATGCCCGGCGGCGGTCCCAACTTC
GGCTGGACCTTCTACGCGCCGCTGTCGACCACCTTCGCCCCGCACAGCGTGACCTTCTTCATCTTCGCCATC
CACCTGGCCGGGATCAGCTCGATCATGGGCGCGATCAACGTGATCGCCACCATCCTCAACCTGCGCGCCCCG
GGCATGACCCTGATGAAGATGCCGCTGTTCGTCTGGACCTGGCTGATCACCGCGTTCCTGTTGATCGCGGTG
ATGCCGGTGCTGGCCGGCGTGGTGACCATGATGCTGATGGACATCCACTTCGGCACCAGCTTCTTCAGCGCC
GCCGGCGGCGGCGACCCGGTGCTGTTCCAGCACGTGTTCTGGTTCTTCGGCCACCCCGAGGTGTACATCATG
ATCCTGCCCGCCTTCGGTGCGGTCAGTGCGATCATCCCGACCTTCGCGCGCAAGCCGCTGTTCGGCTACACC
TCGATGGTCTACGCCACCGCCAGCATCGCCTTCCTCTCCTTCGTGGTCTGGGCGCACCACATGTTCGTGGTC
GGCATCCCGGTCACCGGCGAGCTGTTCTTCATGTACGCCACCATGCTGATCGCGGTGCCCACCGGGGTGAAG
GTGTTCAACTGGGTGACCACCATGTGGGAGGGTTCGCTGACCTTCGAGACGCCGATGCTGTTCGCCGTGGCC
TTCGTCATCCTGTTCACCATCGGCGGCTTCTCCGGACTGATGCTGGCGATCGCCCCGGCGGACTTCCAGTAC
CACGACACCTACTTCGTGGTCGCCCACTTCCACTACGTGCTGGTGCCCGGCGCGATCTTCGGCATCTTCGCC
TCGGCCTACTACTGGCTGCCGAAGTGGACCGGCCACATGTACGACGAGACCCTCGGCAAGCTGCACTTCTGG
ATGAGCTTCATCGGCATGAACCTGGCGTTCTTCCCGATGCACTTCGTCGGCCTCGCCGGCATGCCGCGACGG
ATCCCCGACTACAACCTGCAGTTCGCCGACTTCAACATGGTCTCGTCGATCGGCGCCTTCATGTTCGGCACC
ACCCAGCTGCTGTTCCTGTTCATCGTCATCAAGTGCATCCGCGGCGGCAAGCCGGCCCCTGCCAAGCCCTGG
GACGGCGCCGAGGGCCTGGAGTGGAGCATCCCTTCGCCGGCGCCCTACCACACCTTCAGCACCCCGCCCGAG
GTCAAGTGA