ViewGene
Locus Name:
GeneID:
Location:

GeneID:6006
TrivialName: PA14_33200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33200
PAO1 Ortholog Locus:
Sequence Length:210
Protein Length:69
Start: 2906815
Stop: 2907024
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM43384.1| (AE012543) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
Identities = 22/64 (34%), Positives = 34/64 (53%)
Sequence:
ATGCCCGCTGATGTCGAGATCGGGGGCGCCTACCTGCCGCCGATCGCCCAGGCGCTGCTGCTGGCCTGGCTG
ATCCTGCTGCTGCTCAACCCGCTGTTGCGGCGCTTCGGCGTGTTGCAGCGGGTCTGGCACGAAGCGCTGTTC
CAGGGCGCGTTGTACTGCGCGATCTGCGCCGGTCTGATCCTGTGGATGGGGGAGATGTCCCGATGA
Translation:
MPADVEIGGAYLPPIAQALLLAWLILLLLNPLLRRFGVLQRVWHEALFQGALYCAICAGLILWMGEMSR*
AnnotationID:6007GeneID:6006
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 12:12:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84327216|ref|ZP_00975239.1|  hypothetical protein Paer2_01001572 [Pseudomonas aeruginosa 2192]
Length=69

 Score =  143 bits (361),  Expect = 2e-33
 Identities = 68/69 (98%), Positives = 69/69 (100%), Gaps = 0/69 (0%)

gi|84320807|ref|ZP_00969175.1|  hypothetical protein PaerC_01001394 [Pseudomonas aeruginosa C3719]
Length=69

 Score =  141 bits (355),  Expect = 9e-33
 Identities = 67/69 (97%), Positives = 68/69 (98%), Gaps = 0/69 (0%)

gi|94413067|ref|ZP_01292960.1|  hypothetical protein PaerP_01005139 [Pseudomonas aeruginosa PA7]
Length=69

 Score =  137 bits (345),  Expect = 1e-31
 Identities = 66/69 (95%), Positives = 66/69 (95%), Gaps = 0/69 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.


















    ReferenceID:11908




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29133




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49008How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2047101Stop: 2046892

          
Length: 210


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCCGCTGATGTCGAGATCGGGGGCGCCTACCTGCCGCCGATCGCCCAGGCGCTGCTGCTGGCCTGGCTG 
ATCCTGCTGCTGCTCAACCCGCTGTTGCGGCGCTTCGGCGTGTTGCAGCGGGTCTGGCACGAAGCGCTGTTC 
CAGGGCGCGTTGTACTGCGCGATCTGCGCCGGTCTGATCCTGTGGATGGGGGAGATGTCCCGATGA