ViewGene
Locus Name:
GeneID:
Location:

GeneID:6004
TrivialName: PA14_33300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33300
PAO1 Ortholog Locus:
Sequence Length:504
Protein Length:167
Start: 2928020
Stop: 2927517
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM85295.1|AE013776_4 (AE013776) hypothetical [Yersinia pestis KIM]
Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 3/167 (1%)
Sequence:
ATGAGCGTGCTCTTCGGCAAGCTCCACCAGGCCCTGGTGGCACAGGGCGGGGACAGGATCGGCGTGAGCTTC
CCCGACCTCGACGAAAGCCGCTCCCGGCTGGGCGAGCGCCTGCGCATTCATGCCTCGGCGGACGACCTTCGT
GCCCTGCTCGCCCGGCCCTGGCTGGAAGGGTTGCGGGACCATCTGCAATTCGGAGAACCGGCAGTCGTGCCT
CACCCCACACCGTACCGTCAGGTCAGTCGGGTTCAGGCGAAAAGCAATCCGGAACGCCTGCGGCGGCGGCTC
ATGCGCCGGCACGATCTGAGTGAGGAGGAGGCTCGGAAACGCATTCCCGATACGGTCGCGAGAGCCTTGGAC
CTGCCCTTCGTCACGCTACGCAGCCAGAGCACCGGACAGCACTTCCGTCTCTTCATCCGCCACGGGCCGTTG
CAGGTGACGGCAGAGGAAGGAGGATTCACCTGTTACGGGTTGAGCAAAGGAGGTTTCGTTCCCTGGTTCTGA
Translation:
MSVLFGKLHQALVAQGGDRIGVSFPDLDESRSRLGERLRIHASADDLRALLARPWLEGLRDHLQFGEPAVVP
HPTPYRQVSRVQAKSNPERLRRRLMRRHDLSEEEARKRIPDTVARALDLPFVTLRSQSTGQHFRLFIRHGPL
QVTAEEGGFTCYGLSKGGFVPWF*
AnnotationID:6005GeneID:6004
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 17:05:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|51596826|ref|YP_071017.1|  hypothetical protein YPTB2505 [Yersinia pseudotuberculosis IP 32953]
gi|22125621|ref|NP_669044.1|  hypothetical protein y1727 [Yersinia pestis KIM]
gi|45436934|gb|AAS62487.1|  conserved hypothetical protein [Yersinia pestis biovar Medievalis str. 91001]
i|15980456|emb|CAC91267.1|  conserved hypothetical protein [Yersinia pestis CO92]
      Length=184
      Score =  144 bits (364),  Expect = 8e-34
      Identities = 77/167 (46%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

gi|34497206|ref|NP_901421.1|  hypothetical protein CV1751 [Chromobacterium violaceum ATCC 12472]
     Length=195
     Score =  133 bits (334),  Expect = 2e-30
     Identities = 81/174 (46%), Positives = 98/174 (56%), Gaps = 10/174 (5%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11905




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29129




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6004
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198033
                           gb|AAQ59425.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           197
                           41.62
                           50.25
                           32
                           343.0
     

     
     
198030
                           gb|AAM85295.1|AE013776_4
                           (AE013776) hypothetical [Yersinia pestis KIM]
                           187
                           41.17
                           57.21
                           23
                           367.0
     

     
     
198031
                           emb|CAE14089.1|
                           (BX571865) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           187
                           41.17
                           56.68
                           23
                           367.0
     

     
     
198032
                           emb|CAC91267.1|
                           (AJ414152) conserved hypothetical protein [Yersinia pestis CO92]
                           187
                           41.17
                           57.21
                           23
                           367.0
     

     






      

          
GC ORFID: 49006How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2025896Stop: 2026399

          
Length: 504


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCGTGCTCTTCGGCAAGCTCCACCAGGCCCTGGTGGCACAGGGCGGGGACAGGATCGGCGTGAGCTTC 
CCCGACCTCGACGAAAGCCGCTCCCGGCTGGGCGAGCGCCTGCGCATTCATGCCTCGGCGGACGACCTTCGT 
GCCCTGCTCGCCCGGCCCTGGCTGGAAGGGTTGCGGGACCATCTGCAATTCGGAGAACCGGCAGTCGTGCCT 
CACCCCACACCGTACCGTCAGGTCAGTCGGGTTCAGGCGAAAAGCAATCCGGAACGCCTGCGGCGGCGGCTC 
ATGCGCCGGCACGATCTGAGTGAGGAGGAGGCTCGGAAACGCATTCCCGATACGGTCGCGAGAGCCTTGGAC 
CTGCCCTTCGTCACGCTACGCAGCCAGAGCACCGGACAGCACTTCCGTCTCTTCATCCGCCACGGGCCGTTG 
CAGGTGACGGCAGAGGAAGGAGGATTCACCTGTTACGGGTTGAGCAAAGGAGGTTTCGTTCCCTGGTTCTGA