ViewGene

Locus Name:
GeneID:
Location:

GeneID:6003
TrivialName: PA14_33310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33310
PAO1 Ortholog Locus:
Sequence Length:1029
Protein Length:342
Start: 2929112
Stop: 2928084
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM85294.1|AE013776_3 (AE013776) hypothetical [Yersinia pestis KIM]
Identities = 209/345 (60%), Positives = 245/345 (71%), Gaps = 15/345 (4%)
Sequence:
ATGTCCAAGCCAATACTGAGCACCGCTTCCGTCCTCGCCTTCGAACGTAAGCTCGACCCTTCCGACGCCCTT
ATGAGCGCTGGCGCCTGGGCGCAACGCGACGCCTCGCAGGAATGGCCGGCCGTGACCGTGCGCGAGAAGTCC
GTACGCGGCACCATCTCCAACCGCCTCAAGACCAAGGACCGTGACCCGGCCAAGCTGGACGCCTCGATCCAG
TCGCCCAACCTGCAGACGGTGGACGTGGCCAACCTGCCGAGCGACGCCGACACCCTCAAGGTCCGCTTCACC
CTCCGTGTGCTCGGCGGCGCCGGAACACCGTCTGCCTGCAACGACGCGGCCTACCGTGACAAGCTGCTGCAA
ACGGTCGCCACCTACGTGAACGATCAGGGCTTCGCCGAGCTGGCTCGTCGTTATGCGCACAACCTGGCCAAC
GCCCGCTTCCTGTGGCGCAACCGGGTGGGCGCGGAAGCGGTGGAAGTCCGTATCAACCATATCCGCCAGGGC
GAGGTGGCTCGCGCCTGGCGCTTCGACGCCCTGGCCATCGGCTTGCGCGACTTCAAGGCCGACGCCGAACTG
GACGCGCTCGCCGAACTGATCGCCAGCGGTCTCTCAGGCAGTGGGCATGTCCTGCTCGAAGTGGTCGCCTTC
GCCCGTATCGGCGACGGCCAGGAAGTCTTCCCCTCCCAGGAACTGATCCTCGACAAAGGCGACAAGAAAGGC
CAGAAGAGCAAGACCCTGTACAGCGTACGCGATGCCGCGGCCATCCACTCGCAGAAGATCGGCAATGCCCTG
CGCACCATCGATACGTGGTATCCCGACGAAGATGGCCTCGGCCCCATCGCCGTGGAGCCCTACGGCTCCGTC
ACATCCCAGGGCAAAGCCTATCGCCAGCCCAAGCAGAAGCTGGACTTCTATACGCTGCTCGACAACTGGGTA
CTGCGCGACGAGGCGCCCGCCGTGGAGCAACAGCATTATGTGATCGCCAACCTGATCCGTGGCGGCGTGTTC
GGTGAAGCCGAAGAGAAGTAA
Translation:
MSKPILSTASVLAFERKLDPSDALMSAGAWAQRDASQEWPAVTVREKSVRGTISNRLKTKDRDPAKLDASIQ
SPNLQTVDVANLPSDADTLKVRFTLRVLGGAGTPSACNDAAYRDKLLQTVATYVNDQGFAELARRYAHNLAN
ARFLWRNRVGAEAVEVRINHIRQGEVARAWRFDALAIGLRDFKADAELDALAELIASGLSGSGHVLLEVVAF
ARIGDGQEVFPSQELILDKGDKKGQKSKTLYSVRDAAAIHSQKIGNALRTIDTWYPDEDGLGPIAVEPYGSV
TSQGKAYRQPKQKLDFYTLLDNWVLRDEAPAVEQQHYVIANLIRGGVFGEAEEK*
AnnotationID:6004GeneID:6003
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 17:05:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|34497207|ref|NP_901422.1|  hypothetical protein CV1752 [Chromobacterium violaceum ATCC 12472]
     Length=344
     Score =  486 bits (1252),  Expect = 4e-136
     Identities = 252/347 (72%), Positives = 281/347 (80%), Gaps = 12/347 (3%)

gi|22125620|ref|NP_669043.1|  hypothetical protein y1726 [Yersinia pestis KIM]
gi|45436935|gb|AAS62488.1|  conserved hypothetical protein [Yersinia pestis biovar Medievalis str. 91001]
gi|15980457|emb|CAC91268.1|  conserved hypothetical protein [Yersinia pestis CO92]
     Length=334
     Score =  389 bits (1000),  Expect = 6e-107
     Identities = 209/345 (60%), Positives = 245/345 (71%), Gaps = 15/345 (4%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:11903
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:29127
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:6003

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
198024 gb|AAQ59426.1| (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 350 72.00 80.28 14 1262.0
198025 emb|CAE14088.1| (BX571865) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 347 62.53 71.46 15 1045.0
198026 gb|AAM85294.1|AE013776_3 (AE013776) hypothetical [Yersinia pestis KIM] 346 60.40 70.80 16 1016.0
198027 emb|CAC91268.1| (AJ414152) conserved hypothetical protein [Yersinia pestis CO92] 346 60.40 70.80 16 1016.0
198029 gb|AAK02391.1| (AE006066) unknown [Pasteurella multocida] 349 52.43 67.62 21 834.0
GC ORFID: 49005How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 2024804Stop: 2025832
Length: 1029
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGTCCAAGCCAATACTGAGCACCGCTTCCGTCCTCGCCTTCGAACGTAAGCTCGACCCTTCCGACGCCCTT
ATGAGCGCTGGCGCCTGGGCGCAACGCGACGCCTCGCAGGAATGGCCGGCCGTGACCGTGCGCGAGAAGTCC
GTACGCGGCACCATCTCCAACCGCCTCAAGACCAAGGACCGTGACCCGGCCAAGCTGGACGCCTCGATCCAG
TCGCCCAACCTGCAGACGGTGGACGTGGCCAACCTGCCGAGCGACGCCGACACCCTCAAGGTCCGCTTCACC
CTCCGTGTGCTCGGCGGCGCCGGAACACCGTCTGCCTGCAACGACGCGGCCTACCGTGACAAGCTGCTGCAA
ACGGTCGCCACCTACGTGAACGATCAGGGCTTCGCCGAGCTGGCTCGTCGTTATGCGCACAACCTGGCCAAC
GCCCGCTTCCTGTGGCGCAACCGGGTGGGCGCGGAAGCGGTGGAAGTCCGTATCAACCATATCCGCCAGGGC
GAGGTGGCTCGCGCCTGGCGCTTCGACGCCCTGGCCATCGGCTTGCGCGACTTCAAGGCCGACGCCGAACTG
GACGCGCTCGCCGAACTGATCGCCAGCGGTCTCTCAGGCAGTGGGCATGTCCTGCTCGAAGTGGTCGCCTTC
GCCCGTATCGGCGACGGCCAGGAAGTCTTCCCCTCCCAGGAACTGATCCTCGACAAAGGCGACAAGAAAGGC
CAGAAGAGCAAGACCCTGTACAGCGTACGCGATGCCGCGGCCATCCACTCGCAGAAGATCGGCAATGCCCTG
CGCACCATCGATACGTGGTATCCCGACGAAGATGGCCTCGGCCCCATCGCCGTGGAGCCCTACGGCTCCGTC
ACATCCCAGGGCAAAGCCTATCGCCAGCCCAAGCAGAAGCTGGACTTCTATACGCTGCTCGACAACTGGGTA
CTGCGCGACGAGGCGCCCGCCGTGGAGCAACAGCATTATGTGATCGCCAACCTGATCCGTGGCGGCGTGTTC
GGTGAAGCCGAAGAGAAGTAA