ViewGene
Locus Name:
GeneID:
Location:

GeneID:6002
TrivialName: PA14_33320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33320
PAO1 Ortholog Locus:
Sequence Length:984
Protein Length:327
Start: 2930106
Stop: 2929123
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM85293.1|AE013776_2 (AE013776) hypothetical [Yersinia pestis KIM]
Identities = 130/322 (40%), Positives = 177/322 (54%), Gaps = 22/322 (6%)
Sequence:
ATGAGCGTGACTGATCCCGAGGCGCTGCTGTTGCTGCCACGCCTGTCCATCCAGAACGCCAACGCCATTTCC
AGCCCCTTGACCTGGGGTTTCCCTTCGCCCGGCGCTTTCACCGGATTCGTCCATGCCTTGCAGCGTCGAGTC
GGAATCTCCCTCGATATCGAACTGGACGGTGTCGGCATCGTCTGTCACCGCTTCGAAGCGCAGATATCGCAA
CCGGCCGGCAAGCGCACCAAGGTCTTCAACCTGACCCGCAATCCGCTGAACCGCGACGGCTCCACCGCAGCC
ATCGTCGAAGAAGGTCGCGCCCATCTGGAGGTCAGTCTGCTGCTCGGAGTGCATGGCGATGGTCTGGACGAT
CACCCCGCACAGGAAATCGCCAGGCAGGTACAGGAGCAGGCTGGCGCCATGCGCCTCGCCGGTGGCAGCATC
CTGCCCTGGTGCAATGAGCGCTTCCCGGCTCCGAACGCCGAACTGCTGATGCTGGGTGGCAGCGACGAACAG
CGGCGCAAGAACCAGCGCCGGCTTACCCGCCGCCTGCTCCCCGGCTTCGCCCTGGTGAGTCGCGAGGCGTTG
TTGCAACAACATCTGGAAACCTTGCGCACCACGCTCCCCGAAGCCACCACGCTCGATGCACTGCTCGATCTT
TGTCGAATCAACTTCGAGCCTCCTGCAACCTCGTCCGAAGAAGAAGCATCGCCGCCCGATGCAGCCTGGCAA
GTGCGCGACAAGCCCGGCTGGCTGGTGCCGATCCCGGCTGGCTACAACGCCCTGTCACCCCTGTACCTCCCC
GGCGAAGTGCGAAATGCCCGTGATAGAGAAACACCGCTGCGCTTCGTCGAAAACCTCTTCGGTCTGGGCGAA
TGGCTCAGCCCCCATCGCGTCGCCGCGTTATCGGACCTGCTTTGGTATCACCACGCCGAGCCTGACAAAGGG
CTCTACCGCTGGAGCACACCCCGTTTCGTCGAACACGCCATCGCATAA
Translation:
MSVTDPEALLLLPRLSIQNANAISSPLTWGFPSPGAFTGFVHALQRRVGISLDIELDGVGIVCHRFEAQISQ
PAGKRTKVFNLTRNPLNRDGSTAAIVEEGRAHLEVSLLLGVHGDGLDDHPAQEIARQVQEQAGAMRLAGGSI
LPWCNERFPAPNAELLMLGGSDEQRRKNQRRLTRRLLPGFALVSREALLQQHLETLRTTLPEATTLDALLDL
CRINFEPPATSSEEEASPPDAAWQVRDKPGWLVPIPAGYNALSPLYLPGEVRNARDRETPLRFVENLFGLGE
WLSPHRVAALSDLLWYHHAEPDKGLYRWSTPRFVEHAIA*
AnnotationID:6003GeneID:6002
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 17:05:28
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|34497208|ref|NP_901423.1|  hypothetical protein CV1753 [Chromobacterium violaceum ATCC 12472]
     Length=332
     Score =  267 bits (682),  Expect = 4e-70
     Identities = 144/313 (46%), Positives = 197/313 (62%), Gaps = 14/313 (4%)

gi|51596828|ref|YP_071019.1|  hypothetical protein YPTB2507 [Yersinia pseudotuberculosis IP 
     Length=316
     Score =  206 bits (525),  Expect = 7e-52
     Identities = 129/322 (40%), Positives = 177/322 (54%), Gaps = 22/322 (6%)

gi|22125619|ref|NP_669042.1|  hypothetical protein y1725 [Yersinia pestis KIM]
gi|45436936|gb|AAS62489.1|  conserved hypothetical protein [Yersinia pestis biovar Medievalis str. 91001]
gi|15980458|emb|CAC91269.1|  conserved hypothetical protein [Yersinia pestis CO92]
     Length=316
     Score =  205 bits (522),  Expect = 1e-51
     Identities = 130/322 (40%), Positives = 177/322 (54%), Gaps = 22/322 (6%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11901




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29125




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6002
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198021
                           gb|AAQ59427.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           347
                           42.36
                           58.78
                           35
                           677.0
     

     
     
198022
                           gb|AAM85293.1|AE013776_2
                           (AE013776) hypothetical [Yersinia pestis KIM]
                           342
                           38.88
                           52.63
                           41
                           545.0
     

     
     
198023
                           emb|CAC91269.1|
                           (AJ414152) conserved hypothetical protein [Yersinia pestis CO92]
                           342
                           38.88
                           52.63
                           41
                           545.0
     

     






      

          
GC ORFID: 49004How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2023810Stop: 2024793

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAGCGTGACTGATCCCGAGGCGCTGCTGTTGCTGCCACGCCTGTCCATCCAGAACGCCAACGCCATTTCC 
AGCCCCTTGACCTGGGGTTTCCCTTCGCCCGGCGCTTTCACCGGATTCGTCCATGCCTTGCAGCGTCGAGTC 
GGAATCTCCCTCGATATCGAACTGGACGGTGTCGGCATCGTCTGTCACCGCTTCGAAGCGCAGATATCGCAA 
CCGGCCGGCAAGCGCACCAAGGTCTTCAACCTGACCCGCAATCCGCTGAACCGCGACGGCTCCACCGCAGCC 
ATCGTCGAAGAAGGTCGCGCCCATCTGGAGGTCAGTCTGCTGCTCGGAGTGCATGGCGATGGTCTGGACGAT 
CACCCCGCACAGGAAATCGCCAGGCAGGTACAGGAGCAGGCTGGCGCCATGCGCCTCGCCGGTGGCAGCATC 
CTGCCCTGGTGCAATGAGCGCTTCCCGGCTCCGAACGCCGAACTGCTGATGCTGGGTGGCAGCGACGAACAG 
CGGCGCAAGAACCAGCGCCGGCTTACCCGCCGCCTGCTCCCCGGCTTCGCCCTGGTGAGTCGCGAGGCGTTG 
TTGCAACAACATCTGGAAACCTTGCGCACCACGCTCCCCGAAGCCACCACGCTCGATGCACTGCTCGATCTT 
TGTCGAATCAACTTCGAGCCTCCTGCAACCTCGTCCGAAGAAGAAGCATCGCCGCCCGATGCAGCCTGGCAA 
GTGCGCGACAAGCCCGGCTGGCTGGTGCCGATCCCGGCTGGCTACAACGCCCTGTCACCCCTGTACCTCCCC 
GGCGAAGTGCGAAATGCCCGTGATAGAGAAACACCGCTGCGCTTCGTCGAAAACCTCTTCGGTCTGGGCGAA 
TGGCTCAGCCCCCATCGCGTCGCCGCGTTATCGGACCTGCTTTGGTATCACCACGCCGAGCCTGACAAAGGG 
CTCTACCGCTGGAGCACACCCCGTTTCGTCGAACACGCCATCGCATAA