ViewGene
Locus Name:
GeneID:
Location:

GeneID:6001
TrivialName: PA14_33330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33330
PAO1 Ortholog Locus:
Sequence Length:1305
Protein Length:434
Start: 2931397
Stop: 2930093
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM85292.1|AE013776_1 (AE013776) hypothetical [Yersinia pestis KIM]
Identities = 151/440 (34%), Positives = 217/440 (49%), Gaps = 29/440 (6%)
Sequence:
ATGACCTCTCCCCTCCCAACGCCTACGTGGCAGGAGCTTCGCCAGTTCATCGAATCCTTCATCCAGGAGCGC
CTCCAGGGCAAGCTGGACAAACTCCAACCCGACGAAGACGACAAGCGCCAGACATTGCTGGCCACCCACCGG
CGGGAGGCCTGGCTGGCCGATGCCGCCCGGCGGGTTGGCCAGTTGCAGTTGGTGACCCACACGCTCAAGCCG
ATCCATCCCGACGCCCGCGGCAGCAACCTGCACAGCCTGCCGCAAGCACCCGGCCAACCGGGCCTCGCCGGT
TCCCATGAGCTAGGTGACAGGCTGGTCAGCGATGTGGTGGGCAATGCCGCGGCGCTGGACGTATTCAAGTTT
CTCAGTCTCCAGTATCAGGGTAAAAATCTTCTGAACTGGCTGACAGAAGACAGTGCCGAGGCATTACAGGCG
CTGTCCGATAACGCCGAACAGGCTCGCGAATGGCGGCAAGCGTTCATCGGCATCACGACCGTCAAAGGCGCT
CCCGCGTCCCACAGCCTGGCCAAGCAGTTGTACTTTCCCCTGCCCGGTTCCGGCTACCACCTGCTAGCACCG
CTGTTTCCCACCAGTCTGGTGCATCACGTCCACGCTCTGCTCCGCGAAGCGCGCTTCGGCGACGCGGCCAAG
GCGGCACGCGAAGCGCGCAGCCGCCAGGAGTCATGGCCCCACGGATTCAGCGAGTACCCCAACCTGGCGATC
CAGAAGTTCGGCGGTACCAAGCCGCAGAACATCAGTCAGTTGAACAACGAGCGCCGTGGCGAGAACTGGTTG
CTGCCATCGCTTCCGCCGAACTGGCAAAGGCAGAATGTAAACGCGCCGATGCGGCACTCTTCGGTCTTCGAG
CATGACTTCGGAAGAACTCCTGAAGTATCCCGCCTAACCCGTACCCTGCAGCGTTTTCTTGCCAAGACAGTC
CATAACAACCTCGCCATCCGCCAGCGGCGTGCCCAATTGGTGGCGCAAATCTGCGACGAAGCCCTGCAATAC
GCCGCCCGTCTGCGCGAACTGGAGCCCGGCTGGAGCGCAACCCCCGGGTGCCAACTGCATGACGCGGAGCAG
CTCTGGCTCGATCCGTTGCGCGCACAGACCGATGAGACGTTCTTGCAGCGCCGACTACGAGGTGACTGGCCT
GCCGAGGTCGGAAATCGCTTCGCCAACTGGCTGAACCGGGCGGTCAGCAGCGACAGTCAGATACTGGGTAGC
CCGGAAGCCGCCCAATGGAGCCAGGAGCTGAGCAAGGAACTGACGATGTTCAAGGAGATACTCGAAGATGAG
CGTGACTGA
Translation:
MTSPLPTPTWQELRQFIESFIQERLQGKLDKLQPDEDDKRQTLLATHRREAWLADAARRVGQLQLVTHTLKP
IHPDARGSNLHSLPQAPGQPGLAGSHELGDRLVSDVVGNAAALDVFKFLSLQYQGKNLLNWLTEDSAEALQA
LSDNAEQAREWRQAFIGITTVKGAPASHSLAKQLYFPLPGSGYHLLAPLFPTSLVHHVHALLREARFGDAAK
AAREARSRQESWPHGFSEYPNLAIQKFGGTKPQNISQLNNERRGENWLLPSLPPNWQRQNVNAPMRHSSVFE
HDFGRTPEVSRLTRTLQRFLAKTVHNNLAIRQRRAQLVAQICDEALQYAARLRELEPGWSATPGCQLHDAEQ
LWLDPLRAQTDETFLQRRLRGDWPAEVGNRFANWLNRAVSSDSQILGSPEAAQWSQELSKELTMFKEILEDE
RD*
AnnotationID:6002GeneID:6001
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 17:05:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|34497209|ref|NP_901424.1|  hypothetical protein CV1754 [Chromobacterium violaceum ATCC 12472]
     Length=469
     Score =  349 bits (895),  Expect = 1e-94
     Identities = 203/437 (46%), Positives = 261/437 (59%), Gaps = 25/437 (5%)

gi|51596829|ref|YP_071020.1|  hypothetical protein YPTB2508 [Yersinia pseudotuberculosis IP 32953]
     Length=448
     Score =  249 bits (636),  Expect = 1e-64
     Identities = 162/440 (36%), Positives = 219/440 (49%), Gaps = 29/440 (6%)

gi|22125618|ref|NP_669041.1|  hypothetical protein y1724 [Yersinia pestis KIM]
gi|45436937|gb|AAS62490.1|  conserved hypothetical protein [Yersinia pestis biovar Medievalis str. 91001]
gi|15980459|emb|CAC91270.1|  conserved hypothetical protein [Yersinia pestis CO92]
     Length=448
     Score =  236 bits (602),  Expect = 1e-60
     Identities = 151/440 (34%), Positives = 217/440 (49%), Gaps = 29/440 (6%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11899




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29123




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6001
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198020
                           gb|AAQ59428.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           475
                           43.57
                           56.63
                           47
                           908.0
     

     






      

          
GC ORFID: 49003How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2022519Stop: 2023823

          
Length: 1305


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCTCTCCCCTCCCAACGCCTACGTGGCAGGAGCTTCGCCAGTTCATCGAATCCTTCATCCAGGAGCGC 
CTCCAGGGCAAGCTGGACAAACTCCAACCCGACGAAGACGACAAGCGCCAGACATTGCTGGCCACCCACCGG 
CGGGAGGCCTGGCTGGCCGATGCCGCCCGGCGGGTTGGCCAGTTGCAGTTGGTGACCCACACGCTCAAGCCG 
ATCCATCCCGACGCCCGCGGCAGCAACCTGCACAGCCTGCCGCAAGCACCCGGCCAACCGGGCCTCGCCGGT 
TCCCATGAGCTAGGTGACAGGCTGGTCAGCGATGTGGTGGGCAATGCCGCGGCGCTGGACGTATTCAAGTTT 
CTCAGTCTCCAGTATCAGGGTAAAAATCTTCTGAACTGGCTGACAGAAGACAGTGCCGAGGCATTACAGGCG 
CTGTCCGATAACGCCGAACAGGCTCGCGAATGGCGGCAAGCGTTCATCGGCATCACGACCGTCAAAGGCGCT 
CCCGCGTCCCACAGCCTGGCCAAGCAGTTGTACTTTCCCCTGCCCGGTTCCGGCTACCACCTGCTAGCACCG 
CTGTTTCCCACCAGTCTGGTGCATCACGTCCACGCTCTGCTCCGCGAAGCGCGCTTCGGCGACGCGGCCAAG 
GCGGCACGCGAAGCGCGCAGCCGCCAGGAGTCATGGCCCCACGGATTCAGCGAGTACCCCAACCTGGCGATC 
CAGAAGTTCGGCGGTACCAAGCCGCAGAACATCAGTCAGTTGAACAACGAGCGCCGTGGCGAGAACTGGTTG 
CTGCCATCGCTTCCGCCGAACTGGCAAAGGCAGAATGTAAACGCGCCGATGCGGCACTCTTCGGTCTTCGAG 
CATGACTTCGGAAGAACTCCTGAAGTATCCCGCCTAACCCGTACCCTGCAGCGTTTTCTTGCCAAGACAGTC 
CATAACAACCTCGCCATCCGCCAGCGGCGTGCCCAATTGGTGGCGCAAATCTGCGACGAAGCCCTGCAATAC 
GCCGCCCGTCTGCGCGAACTGGAGCCCGGCTGGAGCGCAACCCCCGGGTGCCAACTGCATGACGCGGAGCAG 
CTCTGGCTCGATCCGTTGCGCGCACAGACCGATGAGACGTTCTTGCAGCGCCGACTACGAGGTGACTGGCCT 
GCCGAGGTCGGAAATCGCTTCGCCAACTGGCTGAACCGGGCGGTCAGCAGCGACAGTCAGATACTGGGTAGC 
CCGGAAGCCGCCCAATGGAGCCAGGAGCTGAGCAAGGAACTGACGATGTTCAAGGAGATACTCGAAGATGAG 
CGTGACTGA