ViewGene
Locus Name:
GeneID:
Location:

GeneID:6000
TrivialName: PA14_33340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33340
PAO1 Ortholog Locus:
Sequence Length:3231
Protein Length:1076
Start: 2934685
Stop: 2931455
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM85291.1|AE013775_11 (AE013775) hypothetical [Yersinia pestis KIM]
Identities = 517/1103 (46%), Positives = 695/1103 (63%), Gaps = 46/1103 (4%)
Sequence:
ATGAACATCCTGCTGGTGTCGCAATGCGAAAAGCGCGCCCTGAGCGAAACCCGCCGCATTCTCGACCAGTTC
GCCGAGCGCCGCGGCGAACGGACCTGGCAAACGCCCATCACTCAAGCCGGACTGGATACCCTGCGACGCCTG
CTGAAGAAAAGCGCACGGCGCAACACCGCCGTAGCCTGTCACTGGATCCGCGGCCGCGACCACAGCGAACTG
CTGTGGATCGTCGGTGATGCCAGCCGCTTCAACGCCCAGGGTGCGGTGCCGACCAACAGGACCTGCCGCGAC
ATCCTGCGCAAGGAAGACGAGAACGACTGGCACAGCGCCGAGGACATCCGCCTGCTGACGGTGATGGCAGCG
CTGTTCCACGATATCGGCAAGGCCAGCCAGGCCTTCCAGGCCAAACTGCGGAACCGCGGCAAACCGATGGCC
GATGCCTATCGTCACGAATGGGTATCACTGCGCCTGTTCGAAGCCTTCGTTGGCCCAGGCAGCAGCGACGAG
GACTGGCTGAGGCGCCTGGCGGACAAGCGAGAGACGGGCGATGCCTGGCTGTCGCAACTGGCCAGGGACGAC
CGGCAATCCGCGCCACCCGGCCCGTTCCAGAAAAGCCGGCTACCGCCGCTCGCCCAGGCGGTCGGCTGGTTG
ATCGTCAGCCATCATCGCCTGCCCAACGGGGACCATCGCGGCAGCGCCTCGCTGGCACGCTTGCCGGCCCCC
ATCCAGAGCCAATGGTGCGGCGCACGCGACGCAGACGCAAAAGAAAAGGCCGCCTGCTGGCAGTTCCCCCAC
GGCCTGCCCTTCGCCAGCGCCCATTGGCGCGCCAGGACAGCGCTATGCGCGCAGAGCATGCTCGAGCGTCCC
GGCCTGCTGGCTCGGGGACCGGCCTTGTTGCATGATTCCTACGTCATGCATGTGTCCCGACTGATCCTGATG
CTCGCGGACCACCACTATTCCAGTCTCCCTGCCGACTCCCGGCTGGGCGACCCGAACTTCCCCTTGCACGCC
AACACCGACCGGGACAGCGGCAAACTAAAGCAGCGCCTGGACGAACACCTGCTCGGCGTCGCCCTGCACAGT
CGCAAGCTCGCCGGCACCCTGCCACGCCTGGAGCGACAACTACCGCGCCTTGCCCGGCACAAGGGCTTCACC
CGCCGGGTCGAGCAGCCGCGCTTCCGCTGGCAGGACAAGGCCTACGACTGCGCGATGGCCTGCCGCGAGCAG
GCTATGGAGCATGGATTCTTCGGCCTCAACCTGGCGTCGACCGGTTGCGGTAAGACCCTCGCCAACGGCCGT
ATCCTGTATGCGCTGGCCGATCCGCAACGCGGCGCGCGTTTCAGCATCGCTCTCGGCCTGCGCAGCTTGACC
CTGCAAACCGGGCAGGCCTACCGCGAGCGGCTCGGCCTGGGCGACGACGACCTCGCTATCCTGGTCGGCGGC
AGCGCCGCCCGCGAACTGTTCGAAAAGCAGCAGGAGCGCCTGGAGCGCAGCGGTAGCGAGTCAGCCCAGGAG
CTGCTGGCGGAAAACAGCCATGTACACTTCGCCGGCACGCTCGAGGACGGCCCTCTACGCGAGTGGCTCGGC
AGGAACAGCGCGGGAAACCGCCTACTCCAGGCGCCCATCCTGGCCTGCACCATCGACCACCTGATGCCCGCC
AGCGAAAGCCTGCGCGGCGGACACCAGATAGCGCCACTGCTCCGCCTGATGACTTCCGACCTGGTGCTCGAC
GAGGTCGACGACTTCGATATCGACGACCTGCCCGCCCTGTCGCGGCTGGTGCACTGGGCCGGCCTGTTCGGC
AGCCGCGTGCTGCTCTCCTCCGCGACCCTGCCGCCGGCCTTGGTGCAGGGCCTGTTCGAGGCCTATCGCAGC
GGCCGGGAAATCTTCCAGCGCCATCGTGGCGCTCCCGGACGCGCTACGGAAATCCGCTGTGCCTGGTTCGAC
GAGTTCTCCAGCCAATCCAGCGCCCACGGCGCCGTAACCTCCTTCAGCGAAGCGCATGCGACCTTCGTCGCC
CAGCGTCTGGCGAAGCTCGAGCAACTGCCGCCACGTCGCCAGGCGCAGCTATGCACCGTGCATGCCGCTGGC
GAGGCCCGTCCCGCGCTGTGCCGCGAGTTGGCCGGGCAGATGAATACCTGGATGGCTGACCTGCATCGCTGC
CATCACACCGAACACCAAGGACGTCGCATCAGTTTCGGCCTGCTACGGCTGGCCAACATCGAACCCCTGATC
GAACTGGCCCAGGCCATCCTCGCCCAGGGTGCGCCCGAGGGGTTGCATGTCCATCTGTGTGTCTACCATTCG
CGGCATCCCCTTCTGGTCCGCTCGGCCATCGAGCGACAACTCGATGAACTGCTGAAGCGTTCGGACGACGAC
GCCGCCGCGCTGTTCGCTCGTCCGACGCTGGCCAAGGCGCTCCAGGCCAGCACGGAGCGGGATCATCTGTTC
GTCGTACTCGCCTCGCCGGTGGCGGAGGTCGGTCGCGACCACGATTACGACTGGGCCATCGTCGAACCCTCC
TCCATGCGCTCGATCATCCAGTTGGCCGGGCGAATCCGCCGCCATCGCTCCGGCTTCAGCGGCGAGGCCAAC
CTATACCTGCTATCGCGCAATATCCGCTCGCTGGAAGGGCAGAATCCGGCGTTCCAGCGGCCCGGCTTCGAG
ACCCCCGACTTCCCTCTTGACAGCCACGACCTGCACGACCTGCTCGACCCCGCCCTACTCGCCCGCATCGAC
GCCAGCCCACGAATCGTCGAACCGTTCCCACTGTTCCCACGCAGCCGGTTGGTCGACCTGGAACACCGACGC
CTGCGCGCGCTGATGCTTGCCGACGACCCACCGTCGTCCCTGCTCGGCGTACCGCTCTGGTGGCAAACCCCG
GCATCGCTCAGCGGCGCCCTGCAAACCAGCCAACCATTTCGCGCAGGCGCCAAGGAGCGATGCTACGCCCTG
CTGCCGGACGAGGACGACGAGGAGCGCTTGCATTTCAGCCGCTACGAAGAAGGGACCTGGAGCAACCAGGAC
AACCTGTTGCGCAACCTCGACCTCACCTATGGCCCGCGCATCCAGACATGGGGCACGGTCAACTATCGGGAG
GAGCTAGTCGCAATGGCCGGCCGCGAGGACCTCGACCTGCGTCAATGCGCCATGCGCTACGGCGAGGTGAGA
TTGCGAGAAAACACCCAGGGATGGAGCTACCACCCTTATTTGGGGTTCAAGAAATACAACTGA
Translation:
MNILLVSQCEKRALSETRRILDQFAERRGERTWQTPITQAGLDTLRRLLKKSARRNTAVACHWIRGRDHSEL
LWIVGDASRFNAQGAVPTNRTCRDILRKEDENDWHSAEDIRLLTVMAALFHDIGKASQAFQAKLRNRGKPMA
DAYRHEWVSLRLFEAFVGPGSSDEDWLRRLADKRETGDAWLSQLARDDRQSAPPGPFQKSRLPPLAQAVGWL
IVSHHRLPNGDHRGSASLARLPAPIQSQWCGARDADAKEKAACWQFPHGLPFASAHWRARTALCAQSMLERP
GLLARGPALLHDSYVMHVSRLILMLADHHYSSLPADSRLGDPNFPLHANTDRDSGKLKQRLDEHLLGVALHS
RKLAGTLPRLERQLPRLARHKGFTRRVEQPRFRWQDKAYDCAMACREQAMEHGFFGLNLASTGCGKTLANGR
ILYALADPQRGARFSIALGLRSLTLQTGQAYRERLGLGDDDLAILVGGSAARELFEKQQERLERSGSESAQE
LLAENSHVHFAGTLEDGPLREWLGRNSAGNRLLQAPILACTIDHLMPASESLRGGHQIAPLLRLMTSDLVLD
EVDDFDIDDLPALSRLVHWAGLFGSRVLLSSATLPPALVQGLFEAYRSGREIFQRHRGAPGRATEIRCAWFD
EFSSQSSAHGAVTSFSEAHATFVAQRLAKLEQLPPRRQAQLCTVHAAGEARPALCRELAGQMNTWMADLHRC
HHTEHQGRRISFGLLRLANIEPLIELAQAILAQGAPEGLHVHLCVYHSRHPLLVRSAIERQLDELLKRSDDD
AAALFARPTLAKALQASTERDHLFVVLASPVAEVGRDHDYDWAIVEPSSMRSIIQLAGRIRRHRSGFSGEAN
LYLLSRNIRSLEGQNPAFQRPGFETPDFPLDSHDLHDLLDPALLARIDASPRIVEPFPLFPRSRLVDLEHRR
LRALMLADDPPSSLLGVPLWWQTPASLSGALQTSQPFRAGAKERCYALLPDEDDEERLHFSRYEEGTWSNQD
NLLRNLDLTYGPRIQTWGTVNYREELVAMAGREDLDLRQCAMRYGEVRLRENTQGWSYHPYLGFKKYN*
AnnotationID:6001GeneID:6000
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 17:05:47
Gene Name:
Confidence Code:3
GeneProduct:possible helicase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1203
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|34497210|ref|NP_901425.1|  hypothetical protein CV1755 [Chromobacterium violaceum ATCC 12472]
     Length=1103
     Score =  967 bits (2499),  Expect = 0.0
     Identities = 560/1115 (50%), Positives = 704/1115 (63%), Gaps = 54/1115 (4%)

gi|22125617|ref|NP_669040.1|  hypothetical protein y1723 [Yersinia pestis KIM]
gi|45436939|gb|AAS62492.1|  Predicted helicases [Yersinia pestis biovar Medievalis str. 91001]
gi|15980461|emb|CAC91272.1|  conserved hypothetical protein [Yersinia pestis CO92]
     Length=1095
     Score =  932 bits (2408),  Expect = 0.0
     Identities = 517/1103 (46%), Positives = 695/1103 (63%), Gaps = 46/1103 (4%)

gi|51596830|ref|YP_071021.1|  hypothetical protein YPTB2509 [Yersinia pseudotuberculosis IP 32953]
     Length=1096
     Score =  926 bits (2393),  Expect = 0.0
     Identities = 517/1104 (46%), Positives = 688/1104 (62%), Gaps = 47/1104 (4%)






 
Structural Features:
COG1203, Predicted helicases [General function prediction only].
             CD-Length = 733 residues, only  41.3% aligned
             Score =  113 bits (283), Expect = 1e-25

COG1203, Predicted helicases [General function prediction only].
             CD-Length = 733 residues, only  14.7% aligned
             Score = 88.6 bits (219), Expect = 4e-18






   
Genomic Context:






   
Comment:


















    ReferenceID:11897




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29121




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6000
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198015
                           gb|AAQ59429.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           1128
                           50.35
                           63.12
                           77
                           2569.0
     

     
     
198016
                           emb|CAE14084.1|
                           (BX571865) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           1118
                           47.04
                           63.05
                           67
                           2508.0
     

     
     
198017
                           gb|AAM85291.1|AE013775_11
                           (AE013775) hypothetical [Yersinia pestis KIM]
                           1118
                           46.69
                           62.79
                           65
                           2457.0
     

     
     
198018
                           emb|CAC91272.1|
                           (AJ414152) conserved hypothetical protein [Yersinia pestis CO92]
                           1118
                           46.69
                           62.79
                           65
                           2457.0
     

     
     
198019
                           gb|AAK02396.1|
                           (AE006067) unknown [Pasteurella multocida]
                           1140
                           42.36
                           58.94
                           98
                           2077.0
     

     






      

          
GC ORFID: 49002How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2019231Stop: 2022461

          
Length: 3231


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACATCCTGCTGGTGTCGCAATGCGAAAAGCGCGCCCTGAGCGAAACCCGCCGCATTCTCGACCAGTTC 
GCCGAGCGCCGCGGCGAACGGACCTGGCAAACGCCCATCACTCAAGCCGGACTGGATACCCTGCGACGCCTG 
CTGAAGAAAAGCGCACGGCGCAACACCGCCGTAGCCTGTCACTGGATCCGCGGCCGCGACCACAGCGAACTG 
CTGTGGATCGTCGGTGATGCCAGCCGCTTCAACGCCCAGGGTGCGGTGCCGACCAACAGGACCTGCCGCGAC 
ATCCTGCGCAAGGAAGACGAGAACGACTGGCACAGCGCCGAGGACATCCGCCTGCTGACGGTGATGGCAGCG 
CTGTTCCACGATATCGGCAAGGCCAGCCAGGCCTTCCAGGCCAAACTGCGGAACCGCGGCAAACCGATGGCC 
GATGCCTATCGTCACGAATGGGTATCACTGCGCCTGTTCGAAGCCTTCGTTGGCCCAGGCAGCAGCGACGAG 
GACTGGCTGAGGCGCCTGGCGGACAAGCGAGAGACGGGCGATGCCTGGCTGTCGCAACTGGCCAGGGACGAC 
CGGCAATCCGCGCCACCCGGCCCGTTCCAGAAAAGCCGGCTACCGCCGCTCGCCCAGGCGGTCGGCTGGTTG 
ATCGTCAGCCATCATCGCCTGCCCAACGGGGACCATCGCGGCAGCGCCTCGCTGGCACGCTTGCCGGCCCCC 
ATCCAGAGCCAATGGTGCGGCGCACGCGACGCAGACGCAAAAGAAAAGGCCGCCTGCTGGCAGTTCCCCCAC 
GGCCTGCCCTTCGCCAGCGCCCATTGGCGCGCCAGGACAGCGCTATGCGCGCAGAGCATGCTCGAGCGTCCC 
GGCCTGCTGGCTCGGGGACCGGCCTTGTTGCATGATTCCTACGTCATGCATGTGTCCCGACTGATCCTGATG 
CTCGCGGACCACCACTATTCCAGTCTCCCTGCCGACTCCCGGCTGGGCGACCCGAACTTCCCCTTGCACGCC 
AACACCGACCGGGACAGCGGCAAACTAAAGCAGCGCCTGGACGAACACCTGCTCGGCGTCGCCCTGCACAGT 
CGCAAGCTCGCCGGCACCCTGCCACGCCTGGAGCGACAACTACCGCGCCTTGCCCGGCACAAGGGCTTCACC 
CGCCGGGTCGAGCAGCCGCGCTTCCGCTGGCAGGACAAGGCCTACGACTGCGCGATGGCCTGCCGCGAGCAG 
GCTATGGAGCATGGATTCTTCGGCCTCAACCTGGCGTCGACCGGTTGCGGTAAGACCCTCGCCAACGGCCGT 
ATCCTGTATGCGCTGGCCGATCCGCAACGCGGCGCGCGTTTCAGCATCGCTCTCGGCCTGCGCAGCTTGACC 
CTGCAAACCGGGCAGGCCTACCGCGAGCGGCTCGGCCTGGGCGACGACGACCTCGCTATCCTGGTCGGCGGC 
AGCGCCGCCCGCGAACTGTTCGAAAAGCAGCAGGAGCGCCTGGAGCGCAGCGGTAGCGAGTCAGCCCAGGAG 
CTGCTGGCGGAAAACAGCCATGTACACTTCGCCGGCACGCTCGAGGACGGCCCTCTACGCGAGTGGCTCGGC 
AGGAACAGCGCGGGAAACCGCCTACTCCAGGCGCCCATCCTGGCCTGCACCATCGACCACCTGATGCCCGCC 
AGCGAAAGCCTGCGCGGCGGACACCAGATAGCGCCACTGCTCCGCCTGATGACTTCCGACCTGGTGCTCGAC 
GAGGTCGACGACTTCGATATCGACGACCTGCCCGCCCTGTCGCGGCTGGTGCACTGGGCCGGCCTGTTCGGC 
AGCCGCGTGCTGCTCTCCTCCGCGACCCTGCCGCCGGCCTTGGTGCAGGGCCTGTTCGAGGCCTATCGCAGC 
GGCCGGGAAATCTTCCAGCGCCATCGTGGCGCTCCCGGACGCGCTACGGAAATCCGCTGTGCCTGGTTCGAC 
GAGTTCTCCAGCCAATCCAGCGCCCACGGCGCCGTAACCTCCTTCAGCGAAGCGCATGCGACCTTCGTCGCC 
CAGCGTCTGGCGAAGCTCGAGCAACTGCCGCCACGTCGCCAGGCGCAGCTATGCACCGTGCATGCCGCTGGC 
GAGGCCCGTCCCGCGCTGTGCCGCGAGTTGGCCGGGCAGATGAATACCTGGATGGCTGACCTGCATCGCTGC 
CATCACACCGAACACCAAGGACGTCGCATCAGTTTCGGCCTGCTACGGCTGGCCAACATCGAACCCCTGATC 
GAACTGGCCCAGGCCATCCTCGCCCAGGGTGCGCCCGAGGGGTTGCATGTCCATCTGTGTGTCTACCATTCG 
CGGCATCCCCTTCTGGTCCGCTCGGCCATCGAGCGACAACTCGATGAACTGCTGAAGCGTTCGGACGACGAC 
GCCGCCGCGCTGTTCGCTCGTCCGACGCTGGCCAAGGCGCTCCAGGCCAGCACGGAGCGGGATCATCTGTTC 
GTCGTACTCGCCTCGCCGGTGGCGGAGGTCGGTCGCGACCACGATTACGACTGGGCCATCGTCGAACCCTCC 
TCCATGCGCTCGATCATCCAGTTGGCCGGGCGAATCCGCCGCCATCGCTCCGGCTTCAGCGGCGAGGCCAAC 
CTATACCTGCTATCGCGCAATATCCGCTCGCTGGAAGGGCAGAATCCGGCGTTCCAGCGGCCCGGCTTCGAG 
ACCCCCGACTTCCCTCTTGACAGCCACGACCTGCACGACCTGCTCGACCCCGCCCTACTCGCCCGCATCGAC 
GCCAGCCCACGAATCGTCGAACCGTTCCCACTGTTCCCACGCAGCCGGTTGGTCGACCTGGAACACCGACGC 
CTGCGCGCGCTGATGCTTGCCGACGACCCACCGTCGTCCCTGCTCGGCGTACCGCTCTGGTGGCAAACCCCG 
GCATCGCTCAGCGGCGCCCTGCAAACCAGCCAACCATTTCGCGCAGGCGCCAAGGAGCGATGCTACGCCCTG 
CTGCCGGACGAGGACGACGAGGAGCGCTTGCATTTCAGCCGCTACGAAGAAGGGACCTGGAGCAACCAGGAC 
AACCTGTTGCGCAACCTCGACCTCACCTATGGCCCGCGCATCCAGACATGGGGCACGGTCAACTATCGGGAG 
GAGCTAGTCGCAATGGCCGGCCGCGAGGACCTCGACCTGCGTCAATGCGCCATGCGCTACGGCGAGGTGAGA 
TTGCGAGAAAACACCCAGGGATGGAGCTACCACCCTTATTTGGGGTTCAAGAAATACAACTGA