ViewGene

Locus Name:
GeneID:
Location:

GeneID:600
TrivialName: PA14_55380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55380
PAO1 Ortholog Locus:PA0692
Sequence Length:1635
Protein Length:544
Start: 4916740
Stop: 4915106
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04081.1|AE004505_2 (AE004505) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 543/544 (99%), Positives = 544/544 (100%)
Sequence:
GTGAAGCGTTCGCTGTTCAATTGTGCGCACCCGTTTCGCCAGCGCTGGTCGATCGGTTGCCTGGCTGTCGCA
TTGTCGTGCGCTTCGCTGGCCGACGAGGCCCCTCCCGCCGCGGCGGGAGCCGAGCCCCAGCGTCTGGTGGAC
ATCAACGAGTACGTGGTACGCGGCAACACCGTGCTGGACAACCGCGCCATCGAGGCGGCGGTGTATCCCTTC
CTCGGGCCGCAGCGCAGCCTGGGCGACATCGAGGGGGCGCGCGATGCGCTGCAGGCCGCCTACCAGGAGAAG
GGCTACCAGTCGGTCTACGTCGAGCTGCCGGAGCAGCAGGTGAGCGGCGGGGTGGTCTACCTGCAGGTCACC
GAGACCACTGTCGGTCGCGTTCGGGTGGTCGGTGCCAAGCACTATTCGCCGGTGGAGTTGCGCGAGGAAGTG
CCGGCCCTGGAGGAGGGCAAGGTACCCGACTTCGCCCAGGTCCAGCGCGAGCTGGCGCAGGTCAACCGCACC
CCCGGCCGCCAGGTGCTGCCGATGGTGCGCGAGGGCCAGCGGCCCGGCACCATGGACGTCGACCTGCAGGTG
GAAGACAAGAATCCCTGGCACGCCAGCATCGGCCTGAACAACGACTACAGCGCCGACACCCGTCACTTGCGC
TCGGTGGTTTCGCTGGGCTACGACAACCTCTGGCAACTCGGCCACGCCATCTCGCTGACCTATTTCACCGCG
CCGCAGGACCAGGACAACGCCAAGGTCTGGTCCGGCTCCTATACCGCGCCGCTGAGCCAGCGCTGGAGCGTG
CAGTTGTCCGGCTACCAGTCCGACAGCGACGTGGCCACGGTGGGCAGCATGAATGTGGTCGGCCAGGGCCAC
TCCTACGGCGTGGCGGCGATCTACAGCCTGCCGGTCACCGGCCTCTGGTCGCACTCGTTCTCCTTCGGCGTC
GACTTCAAGGACTTCGAGGAACAGACCCGGATCGGCGGCAACAACGACAGGGTGCCGATCAAGTACGCCCCG
CTGACTCTCGGCTACAACGGCTTCCGCTACACCGAACGTTCCCAGTTGGCCCTCGGCCTGAGCCTGGTGGCC
GGTACCGGCAGTCTCCTCGGCTACGGCGACGACGACGAGGAATTCGACCGCAAGCGTTATCGTGCCAAGTCC
GGCTTCGGTGTGCTCAAGGGCGATCTCAACCACACCCTGACCTTCGGCGGCGACTGGCAGGTGGCGACCAAG
GCGGCCTTCCAGCTCGCCTCCGGGCCGCTGATTTCCAACGAACAGTTTGCCGCCGGCGGTGCCACCAGCGTG
CGTGGCTACCTGGCGGCGGAGAACACCGCCGACGACGGCTACCTGCTCTCCCAGGAATGGCGTACGCCGTCC
CTCGGACGCTTCCTCGGCAAGCGCGCCGGCGGCTACGTCAACGACTGGCGCTTCTACGTGTTCGCCGAGGGC
GCGCAACTGCGCCTGCAGGATGCGCTGCCCGAACAGGACGACGACTTCAGCCTGGCCAGCGTCGGCATCGGC
ACCCGCGCGCAACTCGCCGACTGGCTGTCCGGCAGCCTCGACTGGGCCTTCCCGCTGCTGGAAGGGACGAAC
ACCGACAAACACGACTCGCGCCTGCATTTCAGCGTGCAGGCGAGCTTCTGA
Translation:
MKRSLFNCAHPFRQRWSIGCLAVALSCASLADEAPPAAAGAEPQRLVDINEYVVRGNTVLDNRAIEAAVYPF
LGPQRSLGDIEGARDALQAAYQEKGYQSVYVELPEQQVSGGVVYLQVTETTVGRVRVVGAKHYSPVELREEV
PALEEGKVPDFAQVQRELAQVNRTPGRQVLPMVREGQRPGTMDVDLQVEDKNPWHASIGLNNDYSADTRHLR
SVVSLGYDNLWQLGHAISLTYFTAPQDQDNAKVWSGSYTAPLSQRWSVQLSGYQSDSDVATVGSMNVVGQGH
SYGVAAIYSLPVTGLWSHSFSFGVDFKDFEEQTRIGGNNDRVPIKYAPLTLGYNGFRYTERSQLALGLSLVA
GTGSLLGYGDDDEEFDRKRYRAKSGFGVLKGDLNHTLTFGGDWQVATKAAFQLASGPLISNEQFAAGGATSV
RGYLAAENTADDGYLLSQEWRTPSLGRFLGKRAGGYVNDWRFYVFAEGAQLRLQDALPEQDDDFSLASVGIG
TRAQLADWLSGSLDWAFPLLEGTNTDKHDSRLHFSVQASF*
AnnotationID:609GeneID:600
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 16:04:31
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:(6) Outer membrane protein
Synonyms:PA0692
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG2831, FhaC, Hemolysin activation/secretion protein 
[Intracellular trafficking and secretion]
 CD-Length = 554 residues,  87.4% aligned
 Score =  330 bits (848), Expect = 5e-91
Genomic Context:
Comment:
ReferenceID:14171
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18345
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:600

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1023 PA0692_tr translation of PA0692 544 99.81 99.99 0 2844.0
39850 gb|AAG04081.1|AE004505_2 (AE004505) hypothetical protein PA0692 [Pseudomonas aeruginosa PAO1] 544 99.63 99.99 0 2841.0
GC ORFID: 43602How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0692Glimmer Score:
Start: 37167Stop: 38801
Length: 1635
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0692 translation of PA0692Homolog Bit Score 1100.0
Other Homologs: t_PA0692 (ORF: GLIMMER)
GC ORF Sequence
GTGAAGCGTTCGCTGTTCAATTGTGCGCACCCGTTTCGCCAGCGCTGGTCGATCGGTTGCCTGGCTGTCGCA
TTGTCGTGCGCTTCGCTGGCCGACGAGGCCCCTCCCGCCGCGGCGGGAGCCGAGCCCCAGCGTCTGGTGGAC
ATCAACGAGTACGTGGTACGCGGCAACACCGTGCTGGACAACCGCGCCATCGAGGCGGCGGTGTATCCCTTC
CTCGGGCCGCAGCGCAGCCTGGGCGACATCGAGGGGGCGCGCGATGCGCTGCAGGCCGCCTACCAGGAGAAG
GGCTACCAGTCGGTCTACGTCGAGCTGCCGGAGCAGCAGGTGAGCGGCGGGGTGGTCTACCTGCAGGTCACC
GAGACCACTGTCGGTCGCGTTCGGGTGGTCGGTGCCAAGCACTATTCGCCGGTGGAGTTGCGCGAGGAAGTG
CCGGCCCTGGAGGAGGGCAAGGTACCCGACTTCGCCCAGGTCCAGCGCGAGCTGGCGCAGGTCAACCGCACC
CCCGGCCGCCAGGTGCTGCCGATGGTGCGCGAGGGCCAGCGGCCCGGCACCATGGACGTCGACCTGCAGGTG
GAAGACAAGAATCCCTGGCACGCCAGCATCGGCCTGAACAACGACTACAGCGCCGACACCCGTCACTTGCGC
TCGGTGGTTTCGCTGGGCTACGACAACCTCTGGCAACTCGGCCACGCCATCTCGCTGACCTATTTCACCGCG
CCGCAGGACCAGGACAACGCCAAGGTCTGGTCCGGCTCCTATACCGCGCCGCTGAGCCAGCGCTGGAGCGTG
CAGTTGTCCGGCTACCAGTCCGACAGCGACGTGGCCACGGTGGGCAGCATGAATGTGGTCGGCCAGGGCCAC
TCCTACGGCGTGGCGGCGATCTACAGCCTGCCGGTCACCGGCCTCTGGTCGCACTCGTTCTCCTTCGGCGTC
GACTTCAAGGACTTCGAGGAACAGACCCGGATCGGCGGCAACAACGACAGGGTGCCGATCAAGTACGCCCCG
CTGACTCTCGGCTACAACGGCTTCCGCTACACCGAACGTTCCCAGTTGGCCCTCGGCCTGAGCCTGGTGGCC
GGTACCGGCAGTCTCCTCGGCTACGGCGACGACGACGAGGAATTCGACCGCAAGCGTTATCGTGCCAAGTCC
GGCTTCGGTGTGCTCAAGGGCGATCTCAACCACACCCTGACCTTCGGCGGCGACTGGCAGGTGGCGACCAAG
GCGGCCTTCCAGCTCGCCTCCGGGCCGCTGATTTCCAACGAACAGTTTGCCGCCGGCGGTGCCACCAGCGTG
CGTGGCTACCTGGCGGCGGAGAACACCGCCGACGACGGCTACCTGCTCTCCCAGGAATGGCGTACGCCGTCC
CTCGGACGCTTCCTCGGCAAGCGCGCCGGCGGCTACGTCAACGACTGGCGCTTCTACGTGTTCGCCGAGGGC
GCGCAACTGCGCCTGCAGGATGCGCTGCCCGAACAGGACGACGACTTCAGCCTGGCCAGCGTCGGCATCGGC
ACCCGCGCGCAACTCGCCGACTGGCTGTCCGGCAGCCTCGACTGGGCCTTCCCGCTGCTGGAAGGGACGAAC
ACCGACAAACACGACTCGCGCCTGCATTTCAGCGTGCAGGCGAGCTTCTGA