ViewGene
Locus Name:
GeneID:
Location:

GeneID:5999
TrivialName: PA14_33350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33350
PAO1 Ortholog Locus:
Sequence Length:975
Protein Length:324
Start: 2935656
Stop: 2934682
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM85289.1|AE013775_9 (AE013775) hypothetical [Yersinia pestis KIM]
Identities = 210/314 (66%), Positives = 251/314 (79%)
Sequence:
ATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAA
CACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGG
AACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGC
GAACTGGCCAGGGCCGGGGTATTGGTAGGCTTCTGCGGCGGCGGCGGAACGCCGCTGTTCAGCGCCAACGAA
GTGGACGTCGAGGTGTCCTGGCTGACGCCGCAGAGCGAATACCGCCCCACCGAATACCTGCAGCGCTGGGTC
GGCTTCTGGTTCGATGAGGAAAAACGCCTGGTGGCCGCCCGGCACTTCCAGCGAGCCAGGCTGGAGCGGATT
CGCCACAGTTGGCTGGAAGACCGCGTATTGCGCGACGCCGGCTTCGCCGTCGATGCCACCGCACTGGCAGTT
GCCGTGGAAGATTCCGCCCGAGCGTTGGAGCAGGCTCCCAATCATGAGCATCTACTGACCGAAGAAGCGCGC
CTGAGCAAGCGCCTGTTCAAGCTCGCAGCCCAGGCCACCCGCTACGGCGAGTTCGTCCGCGCCAAGCGCGGC
AGCGGCGGCGACCCGGCCAACCGCTTCCTCGACCATGGCAACTACCTGGCCTACGGCCTCGCGGCGACCGCC
ACCTGGGTGCTGGGCATTCCCCATGGACTGGCGGTGCTACACGGCAAGACCCGGCGCGGAGGCCTGGTGTTC
GATGTGGCGGACCTGATCAAGGACTCGCTGATCCTGCCGCAGGCATTTCTTTCCGCCATGCGCGGCGACGAG
GAACAGGACTTCCGCCAGGCCTGCCTGGACAACCTGAGCCGCGCACAGGCCCTGGACTTCATGATCGACACG
CTGAAAGACGTGGCGCAGCGGAGCACGGTGTCCGCATGA
Translation:
MDDISPSELKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGRHSHYWNIPIANTTSLLLGTGTSITQAAMR
ELARAGVLVGFCGGGGTPLFSANEVDVEVSWLTPQSEYRPTEYLQRWVGFWFDEEKRLVAARHFQRARLERI
RHSWLEDRVLRDAGFAVDATALAVAVEDSARALEQAPNHEHLLTEEARLSKRLFKLAAQATRYGEFVRAKRG
SGGDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLIKDSLILPQAFLSAMRGDE
EQDFRQACLDNLSRAQALDFMIDTLKDVAQRSTVSA*
AnnotationID:6000GeneID:5999
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 17:05:10
Gene Name:
Confidence Code:4
GeneProduct:hypothetical
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1518
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|34497211|ref|NP_901426.1|  hypothetical protein CV1756 [Chromobacterium violaceum ATCC 12472]
      Length=325
      Score =  484 bits (1247),  Expect = 1e-135
      Identities = 229/318 (72%), Positives = 274/318 (86%), Gaps = 0/318 (0%)

gi|22125615|ref|NP_669038.1|  hypothetical protein y1722 [Yersinia pestis KIM]
gi|45436940|gb|AAS62493.1|  conserved hypothetical protein [Yersinia pestis biovar Medievalis str. 91001]
     Length=336
     Score =  436 bits (1122),  Expect = 4e-121
     Identities = 210/314 (66%), Positives = 251/314 (79%), Gaps = 0/314 (0%)

gi|15980462|emb|CAC91273.1|  conserved hypothetical protein [Yersinia pestis CO92]
     Length=328
     Score =  436 bits (1122),  Expect = 4e-121
     Identities = 210/314 (66%), Positives = 251/314 (79%), Gaps = 0/314 (0%)

gi|51596831|ref|YP_071022.1|  hypothetical protein YPTB2510 [Yersinia pseudotuberculosis IP 32953]
     Length=328
     Score =  435 bits (1119),  Expect = 9e-121
     Identities = 209/314 (66%), Positives = 250/314 (79%), Gaps = 0/314 (0%)








 
Structural Features:
COG1518, Uncharacterized protein predicted to be involved in DNA repair [DNA replication, 
recombination, and repair].
             CD-Length = 327 residues,  84.7% aligned
             Score =  136 bits (344), Expect = 4e-33






   
Genomic Context:






   
Comment:


















    ReferenceID:11895




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29119




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5999
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
198011
                           gb|AAQ59430.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           325
                           70.46
                           84.30
                           1
                           1239.0
     

     
     
198013
                           emb|CAC91273.1|
                           (AJ414152) conserved hypothetical protein [Yersinia pestis CO92]
                           328
                           64.93
                           78.04
                           4
                           1112.0
     

     
     
198012
                           gb|AAM85289.1|AE013775_9
                           (AE013775) hypothetical [Yersinia pestis KIM]
                           336
                           63.39
                           76.19
                           12
                           1112.0
     

     
     
198014
                           gb|AAK02395.1|
                           (AE006067) unknown [Pasteurella multocida]
                           334
                           56.88
                           69.46
                           18
                           965.0
     

     






      

          
GC ORFID: 49001How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 2018260Stop: 2019234

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAA 
CACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGG 
AACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGC 
GAACTGGCCAGGGCCGGGGTATTGGTAGGCTTCTGCGGCGGCGGCGGAACGCCGCTGTTCAGCGCCAACGAA 
GTGGACGTCGAGGTGTCCTGGCTGACGCCGCAGAGCGAATACCGCCCCACCGAATACCTGCAGCGCTGGGTC 
GGCTTCTGGTTCGATGAGGAAAAACGCCTGGTGGCCGCCCGGCACTTCCAGCGAGCCAGGCTGGAGCGGATT 
CGCCACAGTTGGCTGGAAGACCGCGTATTGCGCGACGCCGGCTTCGCCGTCGATGCCACCGCACTGGCAGTT 
GCCGTGGAAGATTCCGCCCGAGCGTTGGAGCAGGCTCCCAATCATGAGCATCTACTGACCGAAGAAGCGCGC 
CTGAGCAAGCGCCTGTTCAAGCTCGCAGCCCAGGCCACCCGCTACGGCGAGTTCGTCCGCGCCAAGCGCGGC 
AGCGGCGGCGACCCGGCCAACCGCTTCCTCGACCATGGCAACTACCTGGCCTACGGCCTCGCGGCGACCGCC 
ACCTGGGTGCTGGGCATTCCCCATGGACTGGCGGTGCTACACGGCAAGACCCGGCGCGGAGGCCTGGTGTTC 
GATGTGGCGGACCTGATCAAGGACTCGCTGATCCTGCCGCAGGCATTTCTTTCCGCCATGCGCGGCGACGAG 
GAACAGGACTTCCGCCAGGCCTGCCTGGACAACCTGAGCCGCGCACAGGCCCTGGACTTCATGATCGACACG 
CTGAAAGACGTGGCGCAGCGGAGCACGGTGTCCGCATGA