ViewGene

Locus Name:
GeneID:
Location:

GeneID: 599

TrivialName: PA14_12860

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_12860

PAO1 Ortholog Locus: PA3943

Sequence Length: 1596

Protein Length: 531

Start: 1103206

Stop: 1104801

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07330.1|AE004812_5 (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 526/531 (99%), Positives = 527/531 (99%)

Sequence:

ATGGGCGACGGCGGCGGCGAGGTGCTCTCCTACCATCGCCTCAGCATGCATCGCCCGGAGCGCTACGCTCCC
GGTCCCGGCGGACTGGACTGGGCGACCCAGCCGGCGCCGTTCCGCCAGTACCGGGGCTGCCGGCAAGTCGAA
CTGCTGCATCGGCCGCTGGAGGAGTCGCCACCCTACGACGGGGTGTTTTCCGGGCCGGCGGCCGCGCCCTCC
CGGCTCGATCGCCGCAGCCTCTCGCAGATGCTCTACGACGGATTGGCGCTGTCGGCCTGGAAGGAGGCCGGC
GGCACTCGCTGGGCGCTACGGGTCAATCCGTCGAGCGGCAACCTGCATCCCACCGAAGCCTACCTGCTGCTT
CCCGGCGGTACCCTGGAGCCGGCGCCACTGCTCGCCCACTACCGTCCCGACAAACATGCCCTGGAGGTGCGC
GGCGAACTGCCGGCGCCGCTGGCTTCGCTGCTGGATGACTGCTTGCCGGCCGGCGGCTGCCTCCTGGCATTG
ACCAGCGTGCCCTGGCGCGAGGCCTGGAAATACGGTGAGCGAGCCTATCGCTACTGCCAGCATGACCTCGGC
CACGCGCTGGCCTGCCTCTCGATCGCCGCGGCGATTCAGGGCTGGGAGATGCGCCTGCTGCGCGGCGTCGCC
GAAAGCGCACTGGACGGCCTGTTCGGCCTTGACCGGGACGGCTTCGCCGAGTGCGAGAGCGTCGACGCACTG
TTCTGGATCGGGCCGGCGCTCACGCAGGAGCCTTCCCTTTCGCCGCGCCTGTGCGAAGGGCTGGCGGCCCTG
CCATTGGCCGGCGCACCGAACCGGCTGTCGCGGGAGTACCGGGACTGGCCGGAGTTGCAGCGGATACATGGG
CTATGCCGGGCGCCGCGCCTGCCGGCACGCCCGTGGAGGGTCGCACCGGGCGAGCCCGGCAACGACAACCCC
GGCCTGCCGCTGCGACCGCTGCTGCATCGGCGGCGTAGCGCGCAGCGCATGGACGGGCGCGCCGGCATCGAT
GTCGAACTGCTGCGGGCCTGGCTGCGCAGGCTGCTGCCGGAGCGCTCGCCGGTGCCTTTCGCGGTCACCGGC
GAGGCCGCGCGGGTCGATCTACTGCTGTTCGTCCATCGCGTCCGGGGCCTGGTGCCGGGGTTGTACTGGCTG
GATCGCAGCGGCCTGCGGCGGCCGCCGATGCGCGAGGACTTCCTCTGGCAGCGCGTCGATCCGGAGTTGCCG
CTGTACCTGTTGCAGGAAGGCGATGCGCGCGCGCTGTCGGCGTATCTCTCCTGCCAGCAGGACATCGCCGGC
GACGGCTGCGTCGCGCTCGCCATGCTCGCCCATCTCGGCGCGGCGCTCGAAGAAGGTCCCTGGTGCTATCCG
CGGCTGTACTGGGAATGCGGGCAGCTCGGCCAGTTGCTCTACCTCGAGGCGGAGGCCGCCGAGCTGTCTGGG
ACGGGTATCGGCTGCTACTACGACCCCCTGGTGCATGAGCTGCTTGGACTAACGGATGAGTCCATGGCCAGT
CTCTACCATTTCACCCTCGGCCGCGCGGTGTGGGACACTCGTCTTTGCAACATGCCCGCGTACCCGGCCTTG
CGCCGCGACTAG

Translation:

MGDGGGEVLSYHRLSMHRPERYAPGPGGLDWATQPAPFRQYRGCRQVELLHRPLEESPPYDGVFSGPAAAPS
RLDRRSLSQMLYDGLALSAWKEAGGTRWALRVNPSSGNLHPTEAYLLLPGGTLEPAPLLAHYRPDKHALEVR
GELPAPLASLLDDCLPAGGCLLALTSVPWREAWKYGERAYRYCQHDLGHALACLSIAAAIQGWEMRLLRGVA
ESALDGLFGLDRDGFAECESVDALFWIGPALTQEPSLSPRLCEGLAALPLAGAPNRLSREYRDWPELQRIHG
LCRAPRLPARPWRVAPGEPGNDNPGLPLRPLLHRRRSAQRMDGRAGIDVELLRAWLRRLLPERSPVPFAVTG
EAARVDLLLFVHRVRGLVPGLYWLDRSGLRRPPMREDFLWQRVDPELPLYLLQEGDARALSAYLSCQQDIAG
DGCVALAMLAHLGAALEEGPWCYPRLYWECGQLGQLLYLEAEAAELSGTGIGCYYDPLVHELLGLTDESMAS
LYHFTLGRAVWDTRLCNMPAYPALRRD*

AnnotationID:608 GeneID:599

AnnotatorUID: urbach

Modification Date/Time: 2004-05-21 12:12:53

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3943

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

gb|AAG07330.1|AE004812_5 (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Length: 531
Identity: 99.05
Similarity: 99.24
Gaps: 0
BitScore: 2847.0

Structural Features:

Genomic Context:

Comment:

ReferenceID:1201

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18343

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:599

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1022 PA3943_tr translation of PA3943 531 99.05 99.24 0 2847.0

39849 gb|AAG07330.1|AE004812_5 (AE004812) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 531 99.05 99.24 0 2847.0

GC ORFID: `43601`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3943`	Glimmer Score:
Start: `3850732`	Stop: `3849137`
Length: `1596`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA3943 translation of PA3943`	Homolog Bit Score `1101.0`
Other Homologs: `t_PA3943 (ORF: GLIMMER)`
GC ORF Sequence
ATGGGCGACGGCGGCGGCGAGGTGCTCTCCTACCATCGCCTCAGCATGCATCGCCCGGAGCGCTACGCTCCC GGTCCCGGCGGACTGGACTGGGCGACCCAGCCGGCGCCGTTCCGCCAGTACCGGGGCTGCCGGCAAGTCGAA CTGCTGCATCGGCCGCTGGAGGAGTCGCCACCCTACGACGGGGTGTTTTCCGGGCCGGCGGCCGCGCCCTCC CGGCTCGATCGCCGCAGCCTCTCGCAGATGCTCTACGACGGATTGGCGCTGTCGGCCTGGAAGGAGGCCGGC GGCACTCGCTGGGCGCTACGGGTCAATCCGTCGAGCGGCAACCTGCATCCCACCGAAGCCTACCTGCTGCTT CCCGGCGGTACCCTGGAGCCGGCGCCACTGCTCGCCCACTACCGTCCCGACAAACATGCCCTGGAGGTGCGC GGCGAACTGCCGGCGCCGCTGGCTTCGCTGCTGGATGACTGCTTGCCGGCCGGCGGCTGCCTCCTGGCATTG ACCAGCGTGCCCTGGCGCGAGGCCTGGAAATACGGTGAGCGAGCCTATCGCTACTGCCAGCATGACCTCGGC CACGCGCTGGCCTGCCTCTCGATCGCCGCGGCGATTCAGGGCTGGGAGATGCGCCTGCTGCGCGGCGTCGCC GAAAGCGCACTGGACGGCCTGTTCGGCCTTGACCGGGACGGCTTCGCCGAGTGCGAGAGCGTCGACGCACTG TTCTGGATCGGGCCGGCGCTCACGCAGGAGCCTTCCCTTTCGCCGCGCCTGTGCGAAGGGCTGGCGGCCCTG CCATTGGCCGGCGCACCGAACCGGCTGTCGCGGGAGTACCGGGACTGGCCGGAGTTGCAGCGGATACATGGG CTATGCCGGGCGCCGCGCCTGCCGGCACGCCCGTGGAGGGTCGCACCGGGCGAGCCCGGCAACGACAACCCC GGCCTGCCGCTGCGACCGCTGCTGCATCGGCGGCGTAGCGCGCAGCGCATGGACGGGCGCGCCGGCATCGAT GTCGAACTGCTGCGGGCCTGGCTGCGCAGGCTGCTGCCGGAGCGCTCGCCGGTGCCTTTCGCGGTCACCGGC GAGGCCGCGCGGGTCGATCTACTGCTGTTCGTCCATCGCGTCCGGGGCCTGGTGCCGGGGTTGTACTGGCTG GATCGCAGCGGCCTGCGGCGGCCGCCGATGCGCGAGGACTTCCTCTGGCAGCGCGTCGATCCGGAGTTGCCG CTGTACCTGTTGCAGGAAGGCGATGCGCGCGCGCTGTCGGCGTATCTCTCCTGCCAGCAGGACATCGCCGGC GACGGCTGCGTCGCGCTCGCCATGCTCGCCCATCTCGGCGCGGCGCTCGAAGAAGGTCCCTGGTGCTATCCG CGGCTGTACTGGGAATGCGGGCAGCTCGGCCAGTTGCTCTACCTCGAGGCGGAGGCCGCCGAGCTGTCTGGG ACGGGTATCGGCTGCTACTACGACCCCCTGGTGCATGAGCTGCTTGGACTAACGGATGAGTCCATGGCCAGT CTCTACCATTTCACCCTCGGCCGCGCGGTGTGGGACACTCGTCTTTGCAACATGCCCGCGTACCCGGCCTTG CGCCGCGACTAG