ViewGene
Locus Name:
GeneID:
Location:

GeneID:598
TrivialName: PA14_58240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58240
PAO1 Ortholog Locus:PA4488
Sequence Length:1650
Protein Length:549
Start: 5183986
Stop: 5182337
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07876.1|AE004862_10 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 541/549 (98%), Positives = 545/549 (99%)
Sequence:
GTGATTGCGTTGCGCGCCTGGCTGGTCCTGCTGTGCGCCGTGCCGTTGCTGCTTCGCGCAGCGGAGGCGCCG
GTCCAGCTGGCCTGGCGCACGACCCAGGGCTACGAACTGGTGAGCCTGGATCGCCAGCGGGTGCTCGAGCGC
CGGCCGTTGCCGGCCGATTTGCAGGCTCCGCTGGGCAGCCTGTGGAAACTGTTCGTCTTCGCCTGGCTGAGC
GACACCGGCCAGGCCGAGTCGCCCTATGCCTGCCAGGGGCGCAGCCGCGAGGAGGTCTACTGCTGCGAGAAT
GGCCAGACGATCGGTCGTGACCGCGCCCTGGTGCGCTCCTGCGGGCTGTATTTCGAGCCGCAGCGCCTCGCC
TTGCGGCCGGAGGCCTGGCGCGACTACTGGCAGGCGCGCCGGGCACCGGCCTGGTTGCTCGATCTGGAACGG
CTGCAACCGCAGACGCGGGTGCCGGTTAAGGAGCTTCTGGAACAGTTGCAGCAACTGCCGGCCCAGGGCGAG
GCGCGGCGGGTACTGCTCGACGTGGCGTTGCAGGCCGGCGACGGCCATGCCGTGGCCAGCCTTGGCGGCCGC
CTGCGGGTGAAGACCTGGAGCTGGCTCGACGACCATGACCCGCAGGCGCGCCAGGGCGGTTTCGCCGGCTGG
CTGGTCGATGGAACGCCGCTCTGGCTCGGCGGCCCGGGAACCAGCAAGGTGATCCTGGACCGCTACGCCGAG
GTGCTCGGGCGCTTCCTGCCGAGTCCGTGGCCGGCCGATCCGGGCCGTTGCGTGGAAGTGAACCTGTTCAGC
CGCTATCCGCTGCGCTCGGTCAGTGATCCCGCCGGCCGCCCGGCCGCCGAAGGCCTGCTGCATGGTCCGCAG
CAAGTGCTGTTCGCCAACGGCAATCGCCTGGACATCGCCAGCGCCGGCGACCTCTTCCTGCAACGGGTGGAT
GGCGTGCCGCGCCTGGTCGCGCGGGTTTCGCGCGAAGAGTACGTGGCGCGGGTGCTGGAGCGCGAAGCCTCG
GCGCAGCCGAAGGAAGCCGCTCGCGCGCTGGCGGTGACCATTCGCACCTATCTATTGCAAAACGCCGCGCCG
CGCGGCGAATGCCTGGCCATCGATGACAGCAGCCAGCGCCAGCGCGTGGCGCCGCGCCCGGCCAGCGCGCCG
ACGCGGCGGATCGCCGCCTGGAGCGCCGACCTGGTGCTGGCCGGGGCGACCGTCAACTATCACTCCGACCAG
CCTGGTCCGGCGCGCCTGTCCTGGAAGCACGCGGTGGAGCAAGCCGGGCAGGGACTGGGCTACGACAGCATC
CTCGCCCAGGCTTTCCCGCGCAGCAGCCTGAGCCGCTGGGACAACCCGGTGGCCGCCTGCCAGCCGTTGCCG
GCCGCCGAAGACTGGCTGCGCAAGCAGCGCCGGCAGTGGCGCGAGCGCCTCGACCGAGAGCCCGGCTACGAG
GAGATTCCGAGTTTTTCCGTGTGCCGCCTGGCTTCCGGGCGGCCCTATGTCGATCGCGAGCGCGAACGCATC
TTCGTCCGCGGCCTGTATTCCCTACAGGAACGCCTGGACCTCACCCACGAATACCTGCACCTGGCCTTCCGC
GCCCATCCCAGCGGCCAGGACGAAAACTATGTCGAAAGCCTGGCCCGGCGCCTGCTACTGGAATGA
Translation:
MIALRAWLVLLCAVPLLLRAAEAPVQLAWRTTQGYELVSLDRQRVLERRPLPADLQAPLGSLWKLFVFAWLS
DTGQAESPYACQGRSREEVYCCENGQTIGRDRALVRSCGLYFEPQRLALRPEAWRDYWQARRAPAWLLDLER
LQPQTRVPVKELLEQLQQLPAQGEARRVLLDVALQAGDGHAVASLGGRLRVKTWSWLDDHDPQARQGGFAGW
LVDGTPLWLGGPGTSKVILDRYAEVLGRFLPSPWPADPGRCVEVNLFSRYPLRSVSDPAGRPAAEGLLHGPQ
QVLFANGNRLDIASAGDLFLQRVDGVPRLVARVSREEYVARVLEREASAQPKEAARALAVTIRTYLLQNAAP
RGECLAIDDSSQRQRVAPRPASAPTRRIAAWSADLVLAGATVNYHSDQPGPARLSWKHAVEQAGQGLGYDSI
LAQAFPRSSLSRWDNPVAACQPLPAAEDWLRKQRRQWRERLDREPGYEEIPSFSVCRLASGRPYVDRERERI
FVRGLYSLQERLDLTHEYLHLAFRAHPSGQDENYVESLARRLLLE*
AnnotationID:607GeneID:598
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 05:05:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4488
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5445
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN81223.1|AE016763_182 (AE016763) Hypothetical protein yfaQ precursor [Escherichia coli
           CFT073]
          Length = 549

 Score =  572 bits (1473), Expect = e-162
 Identities = 288/544 (52%), Positives = 362/544 (66%), Gaps = 3/544 (0%)


>emb|CAD16738.1| (AL646073) PUTATIVE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
          Length = 576

 Score =  427 bits (1098), Expect = e-119
 Identities = 230/501 (45%), Positives = 293/501 (58%), Gaps = 3/501 (0%)






 
Structural Features:
COG5445, Predicted secreted protein
CD-Length = 268 residues, 100.0% aligned
Score =  340 bits (872), Expect = 7e-94
Identities = 173/269 (64%), Positives = 187/269 (69%), Gaps = 1/269 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14169




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18341




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31531




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:598_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:598
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1021
                           PA4488_tr
                           translation of PA4488
                           549
                           98.54
                           99.27
                           0
                           2850.0
     

     
     
39839
                           gb|AAG07876.1|AE004862_10
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           549
                           98.36
                           99.27
                           0
                           2847.0
     

     
     
39840
                           gb|AAN81223.1|AE016763_182
                           (AE016763) Hypothetical protein yfaQ precursor [Escherichia coli CFT073]
                           555
                           51.89
                           65.58
                           12
                           1472.0
     

     
     
39841
                           gb|AAC75286.1|
                           (AE000312) orf, hypothetical protein [Escherichia coli K12]
                           555
                           51.35
                           64.68
                           12
                           1460.0
     

     
     
39843
                           gb|AAN43822.1|AE015246_3
                           (AE015246) orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
                           558
                           51.07
                           64.69
                           18
                           1450.0
     

     






      

          
GC ORFID: 43600How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4488Glimmer Score: 

          
Start: 4447665Stop: 4446016

          
Length: 1650


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4488 translation of PA4488Homolog Bit Score 1102.0

          
Other Homologs:  t_PA4488 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATTGCGTTGCGCGCCTGGCTGGTCCTGCTGTGCGCCGTGCCGTTGCTGCTTCGCGCAGCGGAGGCGCCG 
GTCCAGCTGGCCTGGCGCACGACCCAGGGCTACGAACTGGTGAGCCTGGATCGCCAGCGGGTGCTCGAGCGC 
CGGCCGTTGCCGGCCGATTTGCAGGCTCCGCTGGGCAGCCTGTGGAAACTGTTCGTCTTCGCCTGGCTGAGC 
GACACCGGCCAGGCCGAGTCGCCCTATGCCTGCCAGGGGCGCAGCCGCGAGGAGGTCTACTGCTGCGAGAAT 
GGCCAGACGATCGGTCGTGACCGCGCCCTGGTGCGCTCCTGCGGGCTGTATTTCGAGCCGCAGCGCCTCGCC 
TTGCGGCCGGAGGCCTGGCGCGACTACTGGCAGGCGCGCCGGGCACCGGCCTGGTTGCTCGATCTGGAACGG 
CTGCAACCGCAGACGCGGGTGCCGGTTAAGGAGCTTCTGGAACAGTTGCAGCAACTGCCGGCCCAGGGCGAG 
GCGCGGCGGGTACTGCTCGACGTGGCGTTGCAGGCCGGCGACGGCCATGCCGTGGCCAGCCTTGGCGGCCGC 
CTGCGGGTGAAGACCTGGAGCTGGCTCGACGACCATGACCCGCAGGCGCGCCAGGGCGGTTTCGCCGGCTGG 
CTGGTCGATGGAACGCCGCTCTGGCTCGGCGGCCCGGGAACCAGCAAGGTGATCCTGGACCGCTACGCCGAG 
GTGCTCGGGCGCTTCCTGCCGAGTCCGTGGCCGGCCGATCCGGGCCGTTGCGTGGAAGTGAACCTGTTCAGC 
CGCTATCCGCTGCGCTCGGTCAGTGATCCCGCCGGCCGCCCGGCCGCCGAAGGCCTGCTGCATGGTCCGCAG 
CAAGTGCTGTTCGCCAACGGCAATCGCCTGGACATCGCCAGCGCCGGCGACCTCTTCCTGCAACGGGTGGAT 
GGCGTGCCGCGCCTGGTCGCGCGGGTTTCGCGCGAAGAGTACGTGGCGCGGGTGCTGGAGCGCGAAGCCTCG 
GCGCAGCCGAAGGAAGCCGCTCGCGCGCTGGCGGTGACCATTCGCACCTATCTATTGCAAAACGCCGCGCCG 
CGCGGCGAATGCCTGGCCATCGATGACAGCAGCCAGCGCCAGCGCGTGGCGCCGCGCCCGGCCAGCGCGCCG 
ACGCGGCGGATCGCCGCCTGGAGCGCCGACCTGGTGCTGGCCGGGGCGACCGTCAACTATCACTCCGACCAG 
CCTGGTCCGGCGCGCCTGTCCTGGAAGCACGCGGTGGAGCAAGCCGGGCAGGGACTGGGCTACGACAGCATC 
CTCGCCCAGGCTTTCCCGCGCAGCAGCCTGAGCCGCTGGGACAACCCGGTGGCCGCCTGCCAGCCGTTGCCG 
GCCGCCGAAGACTGGCTGCGCAAGCAGCGCCGGCAGTGGCGCGAGCGCCTCGACCGAGAGCCCGGCTACGAG 
GAGATTCCGAGTTTTTCCGTGTGCCGCCTGGCTTCCGGGCGGCCCTATGTCGATCGCGAGCGCGAACGCATC 
TTCGTCCGCGGCCTGTATTCCCTACAGGAACGCCTGGACCTCACCCACGAATACCTGCACCTGGCCTTCCGC 
GCCCATCCCAGCGGCCAGGACGAAAACTATGTCGAAAGCCTGGCCCGGCGCCTGCTACTGGAATGA