ViewGene
Locus Name:
GeneID:
Location:

GeneID:597
TrivialName: PA14_72230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72230
PAO1 Ortholog Locus:PA5473
Sequence Length:1749
Protein Length:582
Start: 6435138
Stop: 6436886
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08858.1|AE004960_1 (AE004960) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 579/582 (99%), Positives = 580/582 (99%)
Sequence:
ATGCTGAAACTGCTCGACCTGCTCTCTGCCGTCGCCCTGCTGGTGTGGGGCACGCATATCGTCCGCACCGGA
ATTCTCCGGGTCTACGGCGCCGACCTGCGGCGCATCCTCAGTCGCAGCGTGGAAAAACGCCCGCTGGCGTTC
GCCGCCGGCATCGGCGTCACCGCTCTGGTGCAAAGCAGCAACGCCACCGCCCTGCTGGCCACCTCCTTCGTC
GCCCAGGGCCTGATGGCACTGGCGCCGGCACTGGCGATCATGCTCGGCGCCGATGTCGGCACCGCGCTGATG
GCGCGGGTGCTGACCCTCGACCTGTCGTGGCTTTCGCCATTGCTGATCTTCTTCGGCGTGATTTTCTTCCTC
AGCCGCAAACAGACCCGCCTCGGCCAGCTCGGCCGGGTATTCATCGGCCTCGGCCTGATCATCCTGGCGCTC
CAGCTGATCGTCGCCGCCGCCGAGCCGATGACCCAAGCCAAGGGCGTCAAGGTACTGTTCTCCAGCCTGACC
GGCGACATCATGCTCGACGCCCTGACCGGCGCGTTGTTCGCCATGATTTCCTATTCCAGCCTGGCCGCCGTG
CTGCTTACCGCGACCCTCGCCGCGTCCAAGGTGATCTCGCTGAAAGTCGCGCTGTGCCTGGTGGTCGGCGCC
AACCTCGGCAGCGGCATCCTGGCCATGCTCAGCGCCACCGCGCAAAACGCCGCCGGTCGCCGGGTGGCCCTC
GGCAGCCTGTTGTTCAAGGTCGCCGGCTGCCTGCTGGTGCTGCCCCTGGTGGGGCCGCTGGCGGACTGGATG
GATCACTGGCAGTTCAGCACAGCCGAACTGGTGATCGCCTTCCACGTGCTCTACAACGCCGCGCGCTGCCTC
GCCTGCCTGCCGCTGACCAACGCCATGGCCAGCTTCTGCACCCGGGTGATGCCCGACCGTGCCCTTCCCGAC
GACGTCGCCCGGCCGCGCCATCTCGATCCCGCCGCCCTCGACACGCCGAGCCTGGCGCTGGCCAACGCGGTG
CGCGAGACCCTGCGCATGGGCGATACCGTCGAGCAGATGCTGAACAATCTGATGCAGATCATCCGCGGCGGC
GATCCGCTGCTCGGCAAGGACATCCGCAAGCTCGACGACGACGTCGACGCCCTCTACACCGCGATCAAGCTG
TATCTGGCAAGGATGCCGCGCGAGGACCTGTCCGAACGCGACAGCCGGCGCTGGGCGGAGATCATCGAGCTG
GCGATCAACCTGGAGCAGGCCGGCGACATCATCGAGCACATGCTCGCCGCCGTGCAGGACAAGAAGACCTCG
CGCAGCCGCTCGTTCTCCGACACCGGCCTGGAAGAGATCGGCACCCTGTACCAGCAGTTGGTCTCCAACCTG
CGCCTGGGTCTCTCAGTGTTCCTCAACGGCGACCTCGACAGCGCCAAGCGCCTGCGCCGGGCCAAGCAGCGC
TTCCGCCTGCAGGAACGGCGCTACGCCCATGCCCATGTCGACCGCCTGCACCAGCAGGTGGTACAGAGCATC
GAGACCAGCTCGCTGCACCTGGACCTGATCAGCGACATGAAGCGTCTCAACTCGCTGTTCTGCGCCATCGCC
TACGCCGTGCTGGACAACCCTGACGCGCCGAGCAGCGCGGCCGACGAGGGCGTTCGCCAGGACGAGGACGAC
TGGGCCGACGAGGTCGACGACATGACCTCGGCGCCGCTGGCCGAGCCAGCGCTCGTCGAGGAGCGTGCGGAA
ACACGCCGTTCGCGACATTAG
Translation:
MLKLLDLLSAVALLVWGTHIVRTGILRVYGADLRRILSRSVEKRPLAFAAGIGVTALVQSSNATALLATSFV
AQGLMALAPALAIMLGADVGTALMARVLTLDLSWLSPLLIFFGVIFFLSRKQTRLGQLGRVFIGLGLIILAL
QLIVAAAEPMTQAKGVKVLFSSLTGDIMLDALTGALFAMISYSSLAAVLLTATLAASKVISLKVALCLVVGA
NLGSGILAMLSATAQNAAGRRVALGSLLFKVAGCLLVLPLVGPLADWMDHWQFSTAELVIAFHVLYNAARCL
ACLPLTNAMASFCTRVMPDRALPDDVARPRHLDPAALDTPSLALANAVRETLRMGDTVEQMLNNLMQIIRGG
DPLLGKDIRKLDDDVDALYTAIKLYLARMPREDLSERDSRRWAEIIELAINLEQAGDIIEHMLAAVQDKKTS
RSRSFSDTGLEEIGTLYQQLVSNLRLGLSVFLNGDLDSAKRLRRAKQRFRLQERRYAHAHVDRLHQQVVQSI
ETSSLHLDLISDMKRLNSLFCAIAYAVLDNPDAPSSAADEGVRQDEDDWADEVDDMTSAPLAEPALVEERAE
TRRSRH*
AnnotationID:606GeneID:597
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 20:08:50
Gene Name:PA5473
Confidence Code:3
GeneProduct:Probable Na+/Pi symporter
Cell Localization:(6) Outer membrane protein
Synonyms:PA5473
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1283
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18339




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:597
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1020
                           PA5473_tr
                           translation of PA5473
                           582
                           99.48
                           99.65
                           0
                           2856.0
     

     
     
39825
                           gb|AAG08858.1|AE004960_1
                           (AE004960) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           582
                           99.48
                           99.65
                           0
                           2856.0
     

     
     
39830
                           gb|AAN65779.1|AE016204_2
                           (AE016774) Na+/Pi cotransporter family protein [Pseudomonas putida KT2440]
                           582
                           64.26
                           76.63
                           30
                           1821.0
     

     
     
39826
                           gb|AAO53672.1|
                           (AE016856) Na/Pi cotransporter family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           583
                           64.15
                           76.32
                           34
                           1841.0
     

     
     
39828
                           gb|AAG59212.1|AE005634_2
                           (AE005634) putative alpha helix protein [Escherichia coli O157:H7 EDL933]
                           582
                           63.40
                           76.80
                           39
                           1833.0
     

     






      

          
GC ORFID: 43599How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5473Glimmer Score: 

          
Start: 5698827Stop: 5700575

          
Length: 1749


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5473 translation of PA5473Homolog Bit Score 1104.0

          
Other Homologs:  t_PA5473 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTGAAACTGCTCGACCTGCTCTCTGCCGTCGCCCTGCTGGTGTGGGGCACGCATATCGTCCGCACCGGA 
ATTCTCCGGGTCTACGGCGCCGACCTGCGGCGCATCCTCAGTCGCAGCGTGGAAAAACGCCCGCTGGCGTTC 
GCCGCCGGCATCGGCGTCACCGCTCTGGTGCAAAGCAGCAACGCCACCGCCCTGCTGGCCACCTCCTTCGTC 
GCCCAGGGCCTGATGGCACTGGCGCCGGCACTGGCGATCATGCTCGGCGCCGATGTCGGCACCGCGCTGATG 
GCGCGGGTGCTGACCCTCGACCTGTCGTGGCTTTCGCCATTGCTGATCTTCTTCGGCGTGATTTTCTTCCTC 
AGCCGCAAACAGACCCGCCTCGGCCAGCTCGGCCGGGTATTCATCGGCCTCGGCCTGATCATCCTGGCGCTC 
CAGCTGATCGTCGCCGCCGCCGAGCCGATGACCCAAGCCAAGGGCGTCAAGGTACTGTTCTCCAGCCTGACC 
GGCGACATCATGCTCGACGCCCTGACCGGCGCGTTGTTCGCCATGATTTCCTATTCCAGCCTGGCCGCCGTG 
CTGCTTACCGCGACCCTCGCCGCGTCCAAGGTGATCTCGCTGAAAGTCGCGCTGTGCCTGGTGGTCGGCGCC 
AACCTCGGCAGCGGCATCCTGGCCATGCTCAGCGCCACCGCGCAAAACGCCGCCGGTCGCCGGGTGGCCCTC 
GGCAGCCTGTTGTTCAAGGTCGCCGGCTGCCTGCTGGTGCTGCCCCTGGTGGGGCCGCTGGCGGACTGGATG 
GATCACTGGCAGTTCAGCACAGCCGAACTGGTGATCGCCTTCCACGTGCTCTACAACGCCGCGCGCTGCCTC 
GCCTGCCTGCCGCTGACCAACGCCATGGCCAGCTTCTGCACCCGGGTGATGCCCGACCGTGCCCTTCCCGAC 
GACGTCGCCCGGCCGCGCCATCTCGATCCCGCCGCCCTCGACACGCCGAGCCTGGCGCTGGCCAACGCGGTG 
CGCGAGACCCTGCGCATGGGCGATACCGTCGAGCAGATGCTGAACAATCTGATGCAGATCATCCGCGGCGGC 
GATCCGCTGCTCGGCAAGGACATCCGCAAGCTCGACGACGACGTCGACGCCCTCTACACCGCGATCAAGCTG 
TATCTGGCAAGGATGCCGCGCGAGGACCTGTCCGAACGCGACAGCCGGCGCTGGGCGGAGATCATCGAGCTG 
GCGATCAACCTGGAGCAGGCCGGCGACATCATCGAGCACATGCTCGCCGCCGTGCAGGACAAGAAGACCTCG 
CGCAGCCGCTCGTTCTCCGACACCGGCCTGGAAGAGATCGGCACCCTGTACCAGCAGTTGGTCTCCAACCTG 
CGCCTGGGTCTCTCAGTGTTCCTCAACGGCGACCTCGACAGCGCCAAGCGCCTGCGCCGGGCCAAGCAGCGC 
TTCCGCCTGCAGGAACGGCGCTACGCCCATGCCCATGTCGACCGCCTGCACCAGCAGGTGGTACAGAGCATC 
GAGACCAGCTCGCTGCACCTGGACCTGATCAGCGACATGAAGCGTCTCAACTCGCTGTTCTGCGCCATCGCC 
TACGCCGTGCTGGACAACCCTGACGCGCCGAGCAGCGCGGCCGACGAGGGCGTTCGCCAGGACGAGGACGAC 
TGGGCCGACGAGGTCGACGACATGACCTCGGCGCCGCTGGCCGAGCCAGCGCTCGTCGAGGAGCGTGCGGAA 
ACACGCCGTTCGCGACATTAG