ViewGene
Locus Name:
GeneID:
Location:

GeneID:5968
TrivialName: PA14_34720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34720
PAO1 Ortholog Locus:
Sequence Length:801
Protein Length:266
Start: 3085272
Stop: 3084472
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05701.1|AE004657_8 (AE004657) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/204 (97%), Positives = 201/204 (98%)
Sequence:
ATGGACGAAGAAAGGCCCGCCCGGTCATCCCGGGCGGGCCTTTTCCATCCGGCGACGGATCAGCAGGTGCAG
CACATCATCGGCATGCCGTTGCAACTCATCATCATCGGCATGCCGCACTCCATCATCTTCGCCATCAGCATG
CAGCAGTTCTTGAACATCTCCATGTCCATGCCCTGCATCGGCATCATCCTGCAGTGCATGGCGTCGCCCTGC
ATGGAGCACTCCATCATGCACTTCATCGGAGCCATGCCCATCATCGGCATGCCCATCCCCATGCCCATCGTC
GGCATCATCGCCATGCAGGCCTGGGACATGCCCATCATCGCCAGGTTGCCGCACTGCATCATCATGGGCATG
CCGCAGTTCATCATCATCGCCATCATCTCGGCGCTGTTGCGGAACTGGCCCATGTCCATGCCCATCGCCGGC
ATCATCTTGCACAGCATGCCGTCGTCCATCGTTTCGCACTGCATGCTCGCCATCATCATCGGCATGCCCATC
ATGGGCATCATCGGCATGGCGGCATTCATGTTCATCGGCATCTGCATGGCATTCATCATGGCGGTAACTCCT
GTAGGCGAAGCGGGGGTAAGTGCGACTGGGGCCGATTCTAGGCAGCGCCGGCGCACCGGCAAGATGCCGGTG
CAACAGCCGCGCCGGGCGCTGCATGGCGGCTACCGGCGAGGCAGCGAAGGCGTTCGGCGCAATGACAGCGGA
TTCCGCTGCATGACGGAGGAGCGCATCGTCGCGGCAGGTATTTCGACGCGATGGATATTCGAATCGGGCCTA
TCCAAATAA
Translation:
MDEERPARSSRAGLFHPATDQQVQHIIGMPLQLIIIGMPHSIIFAISMQQFLNISMSMPCIGIILQCMASPC
MEHSIMHFIGAMPIIGMPIPMPIVGIIAMQAWDMPIIARLPHCIIMGMPQFIIIAIISALLRNWPMSMPIAG
IILHSMPSSIVSHCMLAIIIGMPIMGIIGMAAFMFIGICMAFIMAVTPVGEAGVSATGADSRQRRRTGKMPV
QQPRRALHGGYRRGSEGVRRNDSGFRCMTEERIVAAGISTRWIFESGLSK*
AnnotationID:5969GeneID:5968
AnnotatorUID: danlee
Modification Date/Time: 2006-03-17 14:02:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9948346|gb|AAG05701.1|  hypothetical protein PA2313 [Pseudomonas aeruginosa PAO1]
 gi|15597509|ref|NP_251003.1|  hypothetical protein PA2313 [Pseudomonas aeruginosa PAO1]
Length=204

 Score =  400 bits (1029),  Expect = 2e-110
 Identities = 198/204 (97%), Positives = 201/204 (98%), Gaps = 0/204 (0%)

gi|84327351|ref|ZP_00975372.1|  hypothetical protein Paer2_01001444 [Pseudomonas aeruginosa 2192]
Length=204

 Score =  399 bits (1025),  Expect = 6e-110
 Identities = 197/204 (96%), Positives = 201/204 (98%), Gaps = 0/204 (0%)

gi|77382575|gb|ABA74088.1|  membrane protein, putative [Pseudomonas fluorescens PfO-1]
 gi|77458572|ref|YP_348077.1|  hypothetical protein Pfl_2345 [Pseudomonas fluorescens PfO-1]
Length=167

 Score =  185 bits (469),  Expect = 2e-45
 Identities = 112/169 (66%), Positives = 124/169 (73%), Gaps = 6/169 (3%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Additional N- and C-termnal sequences.  
Internal sequence is 198/204=97% identical to PAO1 PA2313.


















    ReferenceID:11838




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29057




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5968
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7938
                           PA2313_tr
                           translation of PA2313
                           266
                           74.81
                           75.56
                           62
                           1032.0
     

     
     
198009
                           gb|AAG05701.1|AE004657_8
                           (AE004657) hypothetical protein PA2313 [Pseudomonas aeruginosa PAO1]
                           266
                           74.43
                           75.56
                           62
                           1029.0
     

     
     
198010
                           gb|AAO56582.1|
                           (AE016867) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           272
                           35.66
                           41.91
                           120
                           396.0
     

     






      

          
GC ORFID: 48970How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1868644Stop: 1869444

          
Length: 801


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2313 translation of PA2313Homolog Bit Score 402.0

          
Other Homologs:  t_PA2313 translation of PA2313 (BLASTP 402)

          
GC ORF Sequence

           
ATGGACGAAGAAAGGCCCGCCCGGTCATCCCGGGCGGGCCTTTTCCATCCGGCGACGGATCAGCAGGTGCAG 
CACATCATCGGCATGCCGTTGCAACTCATCATCATCGGCATGCCGCACTCCATCATCTTCGCCATCAGCATG 
CAGCAGTTCTTGAACATCTCCATGTCCATGCCCTGCATCGGCATCATCCTGCAGTGCATGGCGTCGCCCTGC 
ATGGAGCACTCCATCATGCACTTCATCGGAGCCATGCCCATCATCGGCATGCCCATCCCCATGCCCATCGTC 
GGCATCATCGCCATGCAGGCCTGGGACATGCCCATCATCGCCAGGTTGCCGCACTGCATCATCATGGGCATG 
CCGCAGTTCATCATCATCGCCATCATCTCGGCGCTGTTGCGGAACTGGCCCATGTCCATGCCCATCGCCGGC 
ATCATCTTGCACAGCATGCCGTCGTCCATCGTTTCGCACTGCATGCTCGCCATCATCATCGGCATGCCCATC 
ATGGGCATCATCGGCATGGCGGCATTCATGTTCATCGGCATCTGCATGGCATTCATCATGGCGGTAACTCCT 
GTAGGCGAAGCGGGGGTAAGTGCGACTGGGGCCGATTCTAGGCAGCGCCGGCGCACCGGCAAGATGCCGGTG 
CAACAGCCGCGCCGGGCGCTGCATGGCGGCTACCGGCGAGGCAGCGAAGGCGTTCGGCGCAATGACAGCGGA 
TTCCGCTGCATGACGGAGGAGCGCATCGTCGCGGCAGGTATTTCGACGCGATGGATATTCGAATCGGGCCTA 
TCCAAATAA