ViewGene
Locus Name:
GeneID:
Location:

GeneID:595
TrivialName: PA14_43200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43200
PAO1 Ortholog Locus:PA1647
Sequence Length:1722
Protein Length:573
Start: 3848759
Stop: 3850480
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05036.1|AE004592_7 (AE004592) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
Identities = 571/573 (99%), Positives = 573/573 (100%)
Sequence:
ATGCCGCTCGCCCGCTGGGTACCCGGACTCGATAGCCTGCTCCACTACCGCCGCGCCTGGTTCCGTCCGGAT
GTCCAGGCCGGGCTGTCGGTGGCGGCGATCCAGATCCCCACCGCCATCGCCTACGCCCAGATCGCCGGCTTC
CCGCCCCAGGTAGGCCTCTATGCATGCATCCTGCCGATGCTGATCTACGCCCTGATCGGCAGCTCGCGCCAG
TTGATGGTCGGCCCCGACGCGGCGACCGCGGCGATGGTCGCCGCCGCCATCACCCCGCtGGCGGCGGGCGAC
CCGCAGCGCCTGGTGGACCTGTCGATGATCGTCGCGATCATGGTCGGGCTGTTCTCCATCGTCGCCGGCCTG
GCCCGCGCCGGATTCATCGCCAGCTTCCTCTCGCGACCGATCCTGGTCGGCTACCTCAACGGCATCGGCCTG
AGCCTGCTGGTCGGGCAACTGGGCAAGCTGTTCGGCTACGAGGCGGCGACCAGCGGCTTCGTCGCCGGCATC
CTCGCGCTGCTGGAGAACCTGCTGCACATCCATTGGCCGACGCTGATCCTCGGCAGCCTCTCGCTCTTGCTG
ATGGTGCTGCTGCCGCGGCGCTTCCCGCAGTTGCCCGGGGCGCTCTGCGGCGTCCTCCTGGCCAGTCTCGCC
GCGGCGCTGCTGGGCCTGGATCGCTACGGCGTGGAACTGCTTGGCGAGGTACCGGCCGGGCTGCCGCAACTG
AGCTGGCCGCAGACCAGCCTGGAGGAACTGAAAAGCCTGCTGCGCGACGCCACCGGCATTACCGTGGTCAGC
TTCTGCAGCGCCATGCTCACCGCGCGCAGCTTCGCCGCCCGTCACGGCTACAGCATCAACGCCAACCACGAA
TTCGTCGCCCTCGGCCTGGCCAACATCGGCGCCGGGGTCTCCCAGGGCTTCGCCATCAGCGGCGCCGACTCA
CGCACCGCGGTGAACGACATGGTCGGCGGCAAGACCCAACTGGTCGGCGTGATCGCCGCACTGGTGATCGCC
GCCACCCTGTTGCTGCTGAACAAGCCCCTGGGCTGGGTGCCGATGCCGGCGCTCGGCGCGGTCCTGTTGCTG
GCCGGCTGGGGCCTGATCGACGTGCAGGCGCTGAAGGGCTTCTGGAAGCTCAGCCGCTTCGAGTTCAGCCTC
TGCCTGCTGACCACCGTCGGCGTGCTCAGCGTCGGCGTGCTGCCGGGAATCTTCGTCGCCGTCAGCATCGCC
GTACTGCGCCTGCTCTACTACACCTATCGCCCGAGCGACGCGGTGCTCGGCTGGATGCACGGCATCGACGGC
CAGGTCGAGCTGGCCAAGTACCCGCAGGCCACCACTCTTCCCGGCCTGGTGATCTACCGCTTCGACGCCCCC
CTGTTGTTCTTCAACGCCGACTACTTCAAGCAGCGGGTGCTTGCCGTGGTGGACGGCAGCGAGCGGCCGAAT
GCGGTGCTGCTCAACGCCGAAGCCATGACCAACCTCGACATCAGCGGCCTGGCCACCCTCCACGAGGTGCAA
CAGATCCTCAAGGCCCAGGGCGTGCACCTGTCGCTGGCGCGGGTGACCGGGCAGACGCTGGACCTGCTGCAA
CGCTCGAGCATGCTCGGCGAGATCAAGCCGCCGCTGGTGTTCAGCTCGGTGCGCTCGGGGGTCAGTGCTTAT
CGCTACTGGCTGCGCCAGCAGGAAAGACTCGCCGCCCAGGCCGCGGCTACAAGCGGAAATGCCTGA
Translation:
MPLARWVPGLDSLLHYRRAWFRPDVQAGLSVAAIQIPTAIAYAQIAGFPPQVGLYACILPMLIYALIGSSRQ
LMVGPDAATAAMVAAAITPLAAGDPQRLVDLSMIVAIMVGLFSIVAGLARAGFIASFLSRPILVGYLNGIGL
SLLVGQLGKLFGYEAATSGFVAGILALLENLLHIHWPTLILGSLSLLLMVLLPRRFPQLPGALCGVLLASLA
AALLGLDRYGVELLGEVPAGLPQLSWPQTSLEELKSLLRDATGITVVSFCSAMLTARSFAARHGYSINANHE
FVALGLANIGAGVSQGFAISGADSRTAVNDMVGGKTQLVGVIAALVIAATLLLLNKPLGWVPMPALGAVLLL
AGWGLIDVQALKGFWKLSRFEFSLCLLTTVGVLSVGVLPGIFVAVSIAVLRLLYYTYRPSDAVLGWMHGIDG
QVELAKYPQATTLPGLVIYRFDAPLLFFNADYFKQRVLAVVDGSERPNAVLLNAEAMTNLDISGLATLHEVQ
QILKAQGVHLSLARVTGQTLDLLQRSSMLGEIKPPLVFSSVRSGVSAYRYWLRQQERLAAQAAATSGNA*
AnnotationID:604GeneID:595
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 16:04:15
Gene Name:
Confidence Code:3
GeneProduct:putative sulfate transporter
Cell Localization:()
Synonyms:PA1647
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0659
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67030.1|AE016331_7 (AE016779) sulfate transporter [Pseudomonas putida KT2440]
          Length = 568

 Score =  731 bits (1886), Expect = 0.0
 Identities = 359/555 (64%), Positives = 443/555 (79%)

>gb|AAK46054.1| (AE007038) sulfate transporter [Mycobacterium tuberculosis CDC1551]
          Length = 560

 Score =  441 bits (1135), Expect = e-123
 Identities = 232/556 (41%), Positives = 350/556 (62%), Gaps = 5/556 (0%)

>gb|AAN55326.1|AE015670_4 (AE015670) sulfate permease family protein [Shewanella oneidensis
           MR-1]
          Length = 585

 Score =  432 bits (1112), Expect = e-120
 Identities = 235/533 (44%), Positives = 339/533 (63%), Gaps = 5/533 (0%)






 
Structural Features:
COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) 
[Inorganic ion transport and metabolism]
CD-Length = 554 residues, 100.0% aligned
Score =  407 bits (1047), Expect = 2e-114
Identities = 201/562 (35%), Positives = 319/562 (56%), Gaps = 11/562 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1193




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18335




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37256




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:595_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:595
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1018
                           PA1647_tr
                           translation of PA1647
                           573
                           99.65
                           99.99
                           0
                           2858.0
     

     
     
39796
                           gb|AAG05036.1|AE004592_7
                           (AE004592) probable sulfate transporter [Pseudomonas aeruginosa PAO1]
                           573
                           99.65
                           99.99
                           0
                           2858.0
     

     
     
39797
                           gb|AAN67030.1|AE016331_7
                           (AE016779) sulfate transporter [Pseudomonas putida KT2440]
                           576
                           62.84
                           77.77
                           11
                           1881.0
     

     
     
39801
                           gb|AAN55326.1|AE015670_4
                           (AE015670) sulfate permease family protein [Shewanella oneidensis MR-1]
                           604
                           40.72
                           58.77
                           50
                           1119.0
     

     
     
39799
                           emb|CAD94470.1|
                           (BX248340) PROBABLE SULPHATE-TRANSPORT TRANSMEMBRANE PROTEIN ABC TRANSPORTER [Mycobacterium bovis subsp. bovis AF2122/97]
                           580
                           40.00
                           60.34
                           27
                           1135.0
     

     






      

          
GC ORFID: 43597How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1647Glimmer Score: 

          
Start: 1105150Stop: 1103429

          
Length: 1722


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1647 translation of PA1647Homolog Bit Score 1105.0

          
Other Homologs:  t_PA1647 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCTCGCCCGCTGGGTACCCGGACTCGATAGCCTGCTCCACTACCGCCGCGCCTGGTTCCGTCCGGAT 
GTCCAGGCCGGGCTGTCGGTGGCGGCGATCCAGATCCCCACCGCCATCGCCTACGCCCAGATCGCCGGCTTC 
CCGCCCCAGGTAGGCCTCTATGCATGCATCCTGCCGATGCTGATCTACGCCCTGATCGGCAGCTCGCGCCAG 
TTGATGGTCGGCCCCGACGCGGCGACCGCGGCGATGGTCGCCGCCGCCATCACCCCGCtGGCGGCGGGCGAC 
CCGCAGCGCCTGGTGGACCTGTCGATGATCGTCGCGATCATGGTCGGGCTGTTCTCCATCGTCGCCGGCCTG 
GCCCGCGCCGGATTCATCGCCAGCTTCCTCTCGCGACCGATCCTGGTCGGCTACCTCAACGGCATCGGCCTG 
AGCCTGCTGGTCGGGCAACTGGGCAAGCTGTTCGGCTACGAGGCGGCGACCAGCGGCTTCGTCGCCGGCATC 
CTCGCGCTGCTGGAGAACCTGCTGCACATCCATTGGCCGACGCTGATCCTCGGCAGCCTCTCGCTCTTGCTG 
ATGGTGCTGCTGCCGCGGCGCTTCCCGCAGTTGCCCGGGGCGCTCTGCGGCGTCCTCCTGGCCAGTCTCGCC 
GCGGCGCTGCTGGGCCTGGATCGCTACGGCGTGGAACTGCTTGGCGAGGTACCGGCCGGGCTGCCGCAACTG 
AGCTGGCCGCAGACCAGCCTGGAGGAACTGAAAAGCCTGCTGCGCGACGCCACCGGCATTACCGTGGTCAGC 
TTCTGCAGCGCCATGCTCACCGCGCGCAGCTTCGCCGCCCGTCACGGCTACAGCATCAACGCCAACCACGAA 
TTCGTCGCCCTCGGCCTGGCCAACATCGGCGCCGGGGTCTCCCAGGGCTTCGCCATCAGCGGCGCCGACTCA 
CGCACCGCGGTGAACGACATGGTCGGCGGCAAGACCCAACTGGTCGGCGTGATCGCCGCACTGGTGATCGCC 
GCCACCCTGTTGCTGCTGAACAAGCCCCTGGGCTGGGTGCCGATGCCGGCGCTCGGCGCGGTCCTGTTGCTG 
GCCGGCTGGGGCCTGATCGACGTGCAGGCGCTGAAGGGCTTCTGGAAGCTCAGCCGCTTCGAGTTCAGCCTC 
TGCCTGCTGACCACCGTCGGCGTGCTCAGCGTCGGCGTGCTGCCGGGAATCTTCGTCGCCGTCAGCATCGCC 
GTACTGCGCCTGCTCTACTACACCTATCGCCCGAGCGACGCGGTGCTCGGCTGGATGCACGGCATCGACGGC 
CAGGTCGAGCTGGCCAAGTACCCGCAGGCCACCACTCTTCCCGGCCTGGTGATCTACCGCTTCGACGCCCCC 
CTGTTGTTCTTCAACGCCGACTACTTCAAGCAGCGGGTGCTTGCCGTGGTGGACGGCAGCGAGCGGCCGAAT 
GCGGTGCTGCTCAACGCCGAAGCCATGACCAACCTCGACATCAGCGGCCTGGCCACCCTCCACGAGGTGCAA 
CAGATCCTCAAGGCCCAGGGCGTGCACCTGTCGCTGGCGCGGGTGACCGGGCAGACGCTGGACCTGCTGCAA 
CGCTCGAGCATGCTCGGCGAGATCAAGCCGCCGCTGGTGTTCAGCTCGGTGCGCTCGGGGGTCAGTGCTTAT 
CGCTACTGGCTGCGCCAGCAGGAAAGACTCGCCGCCCAGGCCGCGGCTACAAGCGGAAATGCCTGA