ViewGene
Locus Name:
GeneID:
Location:

GeneID:5945
TrivialName: PA14_35740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35740
PAO1 Ortholog Locus:
Sequence Length:3015
Protein Length:1004
Start: 3177507
Stop: 3180521
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC41697.1| (AB088420) transposase [Pseudomonas resinovorans]
Identities = 894/992 (90%), Positives = 943/992 (95%)
Sequence:
ATGGCATCCCTCGAACGTACCGCCTACCCTGTATTGTCGCGCTCCTATTCGAGGGCCGAGCTTCAGCGTGAA
TTCAGCTTCTCCGAGGAAGAAGTCACGTGGGTCAAAAGTCGCTCTAATGCAGCATTCCGACTGAATCTCGCT
GTTCTGTTCAAGACTTTTCAGGTACTCCGATACTTTCCAGAAATCGCTGAAGTGCCGGAGCCAGTTGTCGAT
TTCATCCGCACACAAATAGGTCTACGCAGCAAGGTTGCGCTATCACCCTACAAGTGGATGCAGCTTTACCGC
CATATGAGTGCCGTTCGGGAAAAACTTGGGGTTCGACCGTTCTACGGCTCGGATGGTCAAGACATAGCATCC
ACGCATGCACAGTTGATGGCTCCCCTCCTCGAACAGCGCGCTGACATTATTAATGCGATCATTGACGAGTTG
CTGCGCCAAAACTACGAGCTGCCCGCCTATTCGACCTTGAATGACCTAGCAGAAGCCGCTCGTGCAGAAGCA
CAAGAGAAAATCTTCAACCTTGTGGTAGCCAGAGCTCCAATCAAGGTGATCTATAAGCTAAGGGATCTTCTC
GACACGGACTTCGGGCGTCGGCAGAGTGACTTCAACACACTCAAACAGGCACCCAAGAAACCCTCGCGCAAG
CATCTGGAGGTACTGATCGACCACCTAGCCTGGCTAGAGAGTTTCGGGAAACTGGATGCCATTTTTGATGGG
ATCGTCGATACGAAAATTCGCCACTTTGCTGCCCAAGCTGCGGCGTCGGATGTATCTGAACTGAAGGACTGC
TCGCTGCCGAAGCGTTACACGCTGATGCTTGCTTTGATCTACCGTATGCGGGTGCGAACCCGAGATCACCTG
GCCGAGATGTTCATCCGAAGAATCTCCACGATCCACAAACGCGCCAAGGAGGAGCTGGAGCAAATCCAGGCA
CGTCAACGTCAGAAGTTGGAACAACTGGCGGCCACCCTGGACGGCGTGGTGCAGATTCTGGTTCAAGAGCCG
GATGACCAGGAGGCTGGTAGCCTGATTCGAGAATACCTCTCCCCCGATGGCAACATGGATCGGTTGCGAGAG
GTTTGTGCTGAAGTTCAGGCCACAGGAGGTAATAACTACTTGCCGCTGATCTGGAGGCACTTCAAGTCCCAT
CGTTCACTGCTGTTTCGCCTCAGCCACCTTCTCCAGTTGGAGCCCACCACCCAGGATCGCTCACTTATCCAG
GCGCTTCAGCTCATTCAGGACAGTGAGAATCTGCACCGTGAATGGATCGATGAGCATGTCGACTTGTCGTTT
GCATCAGATCGCTGGGTGAAGATCGTGCGTCGCCCTACCAGTGAAGGGCCGCCTACCAACCGACGTTATCTG
GAGGTCTGCGTGTTCTCCTACCTGGCCAGTGAACTGCGCTCGGGTGATCTGTGCGTGCAGGGATCGGAATCC
TTCGCCGACTACCGTAAACAGTTGCTGCCTTGGGAAGAGTGTCTCCAGCGGCTACCGGCATACTGCGAGAAG
GTGGGCCTTCCTACCACAGCGAAGGAGTTTGTCGCCTCGCTCAAGAGCCAGTTGGAGGAAACCGCGCAACAG
TTAGATGACAAGTTCCCTTCCTGTCGAGGGGATGTGTCGATCAACGATGCAGGCGAGCCGGTACTGCGGCGG
GTGATGGCGCGGGACATCCCGCCTTCAGCCATCTCGCTACAGACGGCGCTTATGCAGCGTATGCCAGCCAGG
CACGTGCTGGACATTATGGCCAACATTGAGCACTGGATTCAGTTCACGCGGCATTTCGGACCGATGTCCGGC
AACGAGCCAAAGCTCAAAGAGCCGGCCGAGCGCTACCTGATGACGATCTTCGCCATGGGCTGCAATCTCGGT
CCCAGCCAGGCCGCGCGGCATCTGGCCGGTAATGTCACACCGCATATGCTGTCCTATACCAATCGCCGCCAC
CTCTCGCTGGAGAAACTGGACAAGGCTAATCGCGAGTTGGTGGAGCTCTATCTGCAACTTGACCTGCCCAAG
CTTTGGGGCGATGGCAAAGCAGTGGCCGCAGACGGTACCCAGTTCGACTTCTATGACGACAACCTACTGGCC
GGCTACCACTTCCGCTATCGCAAGATGGGGGCCGTGGCGTACCGACACGTGGCCAACAACTACATTGCAGTG
TTCCAGCACTTCATCCCGCCAGGCATCTGGGAGGCGATCTATGTGATAGAGGGACTGCTCAAAGTCAGCCTT
AGCGTCGAGCCCGATACGGTCTACTCCGACACCCAGGGCCAGTCGGCCACAGTATTCGCCTTCACTCATCTC
CTGGGTATCAATCTGATGCCGCGTATCCGCAACTGGCGCGACCTAGTGATGTGCCGACCGGATCGAGGCGTA
TCGTACAAGCACATAAACCGACTGTTCACCGACACTGCCGACTGGCACCTGATCGAAACTCACTGGCAGGAT
CTGATGCAGATTGCGCTGTCGATCCAGGCCGGCAAGATTTCCTCGCCCATGCTGCTACGTAAACTTGGCTCT
TACAGCCGGCGCAACAAGCTCTACCTCGCAGCACAGACGCTGGGCAGTGTTATCCGCACGATTTTCCTGCTC
AATTGGATTGGCAGCCGAGAGCTGCGCCAGGAGGTCACTGCGAACACCAACAAGATCGAGTCCTACAACGGC
TTCTCCAAGTGGCTCTCTTTCGGCGGCGATGTAATTGCCGAAAACGATCCGGACGAGCAGCAGAAACGTCTG
CGTTACAACGACATGGTGGCTTCGTCGGTGATTCTGCAGAACACCGTGGACATGATGCGCATCTTGCAGAAA
CTAGCCCGCGAAGGGTGGCAGTTTACCGATGAGGACGTGTCCTTTCTTAGCCCCTACCTGACCAGTAACGTC
AAGCGTTTCGGCGAGTTCAACCTTAAGCTCAACCGACCGCCGGAGCCCTGGATCAAGGATTCGGTATTCCAA
CAGGCTGCCGGCTCGTTGCGAGTCAACTCGACCAGTAAGGCCGCGGCCGAGGAGGCAATATGA
Translation:
MASLERTAYPVLSRSYSRAELQREFSFSEEEVTWVKSRSNAAFRLNLAVLFKTFQVLRYFPEIAEVPEPVVD
FIRTQIGLRSKVALSPYKWMQLYRHMSAVREKLGVRPFYGSDGQDIASTHAQLMAPLLEQRADIINAIIDEL
LRQNYELPAYSTLNDLAEAARAEAQEKIFNLVVARAPIKVIYKLRDLLDTDFGRRQSDFNTLKQAPKKPSRK
HLEVLIDHLAWLESFGKLDAIFDGIVDTKIRHFAAQAAASDVSELKDCSLPKRYTLMLALIYRMRVRTRDHL
AEMFIRRISTIHKRAKEELEQIQARQRQKLEQLAATLDGVVQILVQEPDDQEAGSLIREYLSPDGNMDRLRE
VCAEVQATGGNNYLPLIWRHFKSHRSLLFRLSHLLQLEPTTQDRSLIQALQLIQDSENLHREWIDEHVDLSF
ASDRWVKIVRRPTSEGPPTNRRYLEVCVFSYLASELRSGDLCVQGSESFADYRKQLLPWEECLQRLPAYCEK
VGLPTTAKEFVASLKSQLEETAQQLDDKFPSCRGDVSINDAGEPVLRRVMARDIPPSAISLQTALMQRMPAR
HVLDIMANIEHWIQFTRHFGPMSGNEPKLKEPAERYLMTIFAMGCNLGPSQAARHLAGNVTPHMLSYTNRRH
LSLEKLDKANRELVELYLQLDLPKLWGDGKAVAADGTQFDFYDDNLLAGYHFRYRKMGAVAYRHVANNYIAV
FQHFIPPGIWEAIYVIEGLLKVSLSVEPDTVYSDTQGQSATVFAFTHLLGINLMPRIRNWRDLVMCRPDRGV
SYKHINRLFTDTADWHLIETHWQDLMQIALSIQAGKISSPMLLRKLGSYSRRNKLYLAAQTLGSVIRTIFLL
NWIGSRELRQEVTANTNKIESYNGFSKWLSFGGDVIAENDPDEQQKRLRYNDMVASSVILQNTVDMMRILQK
LAREGWQFTDEDVSFLSPYLTSNVKRFGEFNLKLNRPPEPWIKDSVFQQAAGSLRVNSTSKAAAEEAI*
AnnotationID:5946GeneID:5945
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:38
Gene Name:
Confidence Code:3
GeneProduct:putative transposase
Cell Localization:()
Synonyms:tpnA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01526, COG4644
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|26106257|dbj|BAC41697.1|  transposase [Pseudomonas resinovorans]
     Length=1004
     Score = 1817 bits (4706),  Expect = 0.0
     Identities = 894/992 (90%), Positives = 943/992 (95%), Gaps = 0/992 (0%)

gi|24984572|gb|AAN68572.1|  Tn4652, transposase [Pseudomonas putida KT2440]
     Length=1004
     Score = 1733 bits (4487),  Expect = 0.0
     Identities = 863/1001 (86%), Positives = 915/1001 (91%), Gaps = 1/1001 (0%)

gi|18150958|ref|NP_542895.1|  Tn4651 transposase [Pseudomonas putida]
     Length=1001
     Score = 1731 bits (4484),  Expect = 0.0
     Identities = 862/1001 (86%), Positives = 915/1001 (91%), Gaps = 1/1001 (0%)






 
Structural Features:
pfam01526, Transposase_7, Transposase.
             CD-Length = 968 residues,  96.7% aligned
             Score =  433 bits (1116), Expect = 3e-122

COG4644, Transposase and inactivated derivatives, TnpA family [DNA replication, recombination, 
and repair].
             CD-Length = 323 residues,  96.0% aligned
             Score =  158 bits (400), Expect = 4e-39






   
Genomic Context:






   
Comment:


















    ReferenceID:11793




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29010




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5945
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197997
                           gb|AAP94690.1|
                           (AY258138) putative transposase [Pseudomonas aeruginosa]
                           1004
                           99.90
                           99.90
                           0
                           5173.0
     

     
     
197998
                           dbj|BAC41697.1|
                           (AB088420) transposase [Pseudomonas resinovorans]
                           1004
                           89.14
                           94.32
                           0
                           4705.0
     

     
     
198000
                           emb|CAC86835.1|
                           (AJ344068) Tn4651 transposase [Pseudomonas putida]
                           1005
                           85.77
                           91.04
                           5
                           4486.0
     

     
     
197999
                           gb|AAN68572.1|AE016489_3
                           (AE016785) Tn4652, transposase [Pseudomonas putida KT2440]
                           1008
                           85.61
                           90.77
                           8
                           4489.0
     

     
     
198001
                           emb|CAA58655.1|
                           (X83686) Tn4652 transposase [Pseudomonas putida]
                           1008
                           85.51
                           90.77
                           8
                           4486.0
     

     






      

          
GC ORFID: 48947How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1776409Stop: 1773395

          
Length: 3015


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCATCCCTCGAACGTACCGCCTACCCTGTATTGTCGCGCTCCTATTCGAGGGCCGAGCTTCAGCGTGAA 
TTCAGCTTCTCCGAGGAAGAAGTCACGTGGGTCAAAAGTCGCTCTAATGCAGCATTCCGACTGAATCTCGCT 
GTTCTGTTCAAGACTTTTCAGGTACTCCGATACTTTCCAGAAATCGCTGAAGTGCCGGAGCCAGTTGTCGAT 
TTCATCCGCACACAAATAGGTCTACGCAGCAAGGTTGCGCTATCACCCTACAAGTGGATGCAGCTTTACCGC 
CATATGAGTGCCGTTCGGGAAAAACTTGGGGTTCGACCGTTCTACGGCTCGGATGGTCAAGACATAGCATCC 
ACGCATGCACAGTTGATGGCTCCCCTCCTCGAACAGCGCGCTGACATTATTAATGCGATCATTGACGAGTTG 
CTGCGCCAAAACTACGAGCTGCCCGCCTATTCGACCTTGAATGACCTAGCAGAAGCCGCTCGTGCAGAAGCA 
CAAGAGAAAATCTTCAACCTTGTGGTAGCCAGAGCTCCAATCAAGGTGATCTATAAGCTAAGGGATCTTCTC 
GACACGGACTTCGGGCGTCGGCAGAGTGACTTCAACACACTCAAACAGGCACCCAAGAAACCCTCGCGCAAG 
CATCTGGAGGTACTGATCGACCACCTAGCCTGGCTAGAGAGTTTCGGGAAACTGGATGCCATTTTTGATGGG 
ATCGTCGATACGAAAATTCGCCACTTTGCTGCCCAAGCTGCGGCGTCGGATGTATCTGAACTGAAGGACTGC 
TCGCTGCCGAAGCGTTACACGCTGATGCTTGCTTTGATCTACCGTATGCGGGTGCGAACCCGAGATCACCTG 
GCCGAGATGTTCATCCGAAGAATCTCCACGATCCACAAACGCGCCAAGGAGGAGCTGGAGCAAATCCAGGCA 
CGTCAACGTCAGAAGTTGGAACAACTGGCGGCCACCCTGGACGGCGTGGTGCAGATTCTGGTTCAAGAGCCG 
GATGACCAGGAGGCTGGTAGCCTGATTCGAGAATACCTCTCCCCCGATGGCAACATGGATCGGTTGCGAGAG 
GTTTGTGCTGAAGTTCAGGCCACAGGAGGTAATAACTACTTGCCGCTGATCTGGAGGCACTTCAAGTCCCAT 
CGTTCACTGCTGTTTCGCCTCAGCCACCTTCTCCAGTTGGAGCCCACCACCCAGGATCGCTCACTTATCCAG 
GCGCTTCAGCTCATTCAGGACAGTGAGAATCTGCACCGTGAATGGATCGATGAGCATGTCGACTTGTCGTTT 
GCATCAGATCGCTGGGTGAAGATCGTGCGTCGCCCTACCAGTGAAGGGCCGCCTACCAACCGACGTTATCTG 
GAGGTCTGCGTGTTCTCCTACCTGGCCAGTGAACTGCGCTCGGGTGATCTGTGCGTGCAGGGATCGGAATCC 
TTCGCCGACTACCGTAAACAGTTGCTGCCTTGGGAAGAGTGTCTCCAGCGGCTACCGGCATACTGCGAGAAG 
GTGGGCCTTCCTACCACAGCGAAGGAGTTTGTCGCCTCGCTCAAGAGCCAGTTGGAGGAAACCGCGCAACAG 
TTAGATGACAAGTTCCCTTCCTGTCGAGGGGATGTGTCGATCAACGATGCAGGCGAGCCGGTACTGCGGCGG 
GTGATGGCGCGGGACATCCCGCCTTCAGCCATCTCGCTACAGACGGCGCTTATGCAGCGTATGCCAGCCAGG 
CACGTGCTGGACATTATGGCCAACATTGAGCACTGGATTCAGTTCACGCGGCATTTCGGACCGATGTCCGGC 
AACGAGCCAAAGCTCAAAGAGCCGGCCGAGCGCTACCTGATGACGATCTTCGCCATGGGCTGCAATCTCGGT 
CCCAGCCAGGCCGCGCGGCATCTGGCCGGTAATGTCACACCGCATATGCTGTCCTATACCAATCGCCGCCAC 
CTCTCGCTGGAGAAACTGGACAAGGCTAATCGCGAGTTGGTGGAGCTCTATCTGCAACTTGACCTGCCCAAG 
CTTTGGGGCGATGGCAAAGCAGTGGCCGCAGACGGTACCCAGTTCGACTTCTATGACGACAACCTACTGGCC 
GGCTACCACTTCCGCTATCGCAAGATGGGGGCCGTGGCGTACCGACACGTGGCCAACAACTACATTGCAGTG 
TTCCAGCACTTCATCCCGCCAGGCATCTGGGAGGCGATCTATGTGATAGAGGGACTGCTCAAAGTCAGCCTT 
AGCGTCGAGCCCGATACGGTCTACTCCGACACCCAGGGCCAGTCGGCCACAGTATTCGCCTTCACTCATCTC 
CTGGGTATCAATCTGATGCCGCGTATCCGCAACTGGCGCGACCTAGTGATGTGCCGACCGGATCGAGGCGTA 
TCGTACAAGCACATAAACCGACTGTTCACCGACACTGCCGACTGGCACCTGATCGAAACTCACTGGCAGGAT 
CTGATGCAGATTGCGCTGTCGATCCAGGCCGGCAAGATTTCCTCGCCCATGCTGCTACGTAAACTTGGCTCT 
TACAGCCGGCGCAACAAGCTCTACCTCGCAGCACAGACGCTGGGCAGTGTTATCCGCACGATTTTCCTGCTC 
AATTGGATTGGCAGCCGAGAGCTGCGCCAGGAGGTCACTGCGAACACCAACAAGATCGAGTCCTACAACGGC 
TTCTCCAAGTGGCTCTCTTTCGGCGGCGATGTAATTGCCGAAAACGATCCGGACGAGCAGCAGAAACGTCTG 
CGTTACAACGACATGGTGGCTTCGTCGGTGATTCTGCAGAACACCGTGGACATGATGCGCATCTTGCAGAAA 
CTAGCCCGCGAAGGGTGGCAGTTTACCGATGAGGACGTGTCCTTTCTTAGCCCCTACCTGACCAGTAACGTC 
AAGCGTTTCGGCGAGTTCAACCTTAAGCTCAACCGACCGCCGGAGCCCTGGATCAAGGATTCGGTATTCCAA 
CAGGCTGCCGGCTCGTTGCGAGTCAACTCGACCAGTAAGGCCGCGGCCGAGGAGGCAATATGA