ViewGene
Locus Name:
GeneID:
Location:

GeneID:5942
TrivialName: PA14_35810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35810
PAO1 Ortholog Locus:
Sequence Length:711
Protein Length:236
Start: 3187047
Stop: 3186337
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC41568.1| (AB088420) putative ABC transporter subunit [Pseudomonas resinovorans]
Identities = 215/236 (91%), Positives = 222/236 (94%)
Sequence:
ATGACCTGGAACCCGGTGGTGGGTTGCACCAAGGTGTCGCCGGGCTGCAAACACTGCTATGCCGAGAACATG
GCGCGTCGCTTGCAGGCCATGGGCACGCCCGGCTACGAGAACGGCTTTCGCCTCAGCCTGCGCCCAGAGAAA
CTGCAGGAGCCTCTGCAGCGCAAGAAGCCGACCATCTACTTTGTCAATTCCATGTCTGACCTGTTCCATGAG
CAGGTGCCGGACACCTACATCGACCAGGTGTTCGCGGTTATCCACCAGGCCTCACAGCACACCTTCCAGATC
CTCACTAAGCGGGCCGAGCGCCTGGCCGACTATTTCAGCCAGCGCACACCGCCGGCCAACGCTTGGCTGGGG
GTCTCGGTCGAGGACCGGGAGTACGGCGTGCCCAGAATCGACTGCCTGCGTGGCATCAACGCCGCGATCCGT
TTCCTCTCCGCGGAACCCTTACTAGAAGACTTGGGTGAACTGAACCTGACTGACATCCATTGGGTCATCGTC
GGCGGCGAGTCCGGCGCCAAGGCCCGGCCAATGAAGCAGGAGTGGGTGGATAACATCCACCGCCAGTGCGAT
GCCTTTGGCGCTGCTTTCTTTTTCAAACAATGGGGCGGCTGGGGCTCCGATGGCGTGAAGCGTTCAAAGAAA
GCTAATGGCCGGCTGCTGAAGGGCCAGACCTGGGATGAAATTCCGCTGCTGACCCTCGCCTGA
Translation:
MTWNPVVGCTKVSPGCKHCYAENMARRLQAMGTPGYENGFRLSLRPEKLQEPLQRKKPTIYFVNSMSDLFHE
QVPDTYIDQVFAVIHQASQHTFQILTKRAERLADYFSQRTPPANAWLGVSVEDREYGVPRIDCLRGINAAIR
FLSAEPLLEDLGELNLTDIHWVIVGGESGAKARPMKQEWVDNIHRQCDAFGAAFFFKQWGGWGSDGVKRSKK
ANGRLLKGQTWDEIPLLTLA*
AnnotationID:5943GeneID:5942
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4422
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|26106128|dbj|BAC41568.1|  putative ABC transporter subunit [Pseudomonas resinovorans]
     Length=247
     Score =  452 bits (1164),  Expect = 3e-126
     Identities = 215/236 (91%), Positives = 222/236 (94%), Gaps = 0/236 (0%)

gi|28850524|gb|AAO53604.1|  conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
     Length=247
     Score =  449 bits (1155),  Expect = 3e-125
     Identities = 209/236 (88%), Positives = 223/236 (94%), Gaps = 0/236 (0%)

gi|67774821|gb|EAM34497.1|  Phage Gp37Gp68 [Chlorobium phaeobacteroides DSM 266]
     Length=243
     Score =  255 bits (651),  Expect = 9e-67
     Identities = 133/233 (57%), Positives = 156/233 (66%), Gaps = 10/233 (4%)








 
Structural Features:
COG4422, Bacteriophage protein gp37 [Function unknown].
             CD-Length = 250 residues,  93.6% aligned
             Score =  260 bits (666), Expect = 8e-71






   
Genomic Context:






   
Comment:


















    ReferenceID:11787




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16934




  
Author/Investigator(s):
        Maeda K, Nojiri H, Shintani M, Yoshida T, Habe H, Omori T.





  
Title:
        Complete nucleotide sequence of carbazole/dioxin-degrading plasmid pCAR1 in Pseudomonas resinovorans strain CA10 indicates its mosaicity and the presence of large catabolic transposon Tn4676.




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Online 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=22435905&dopt=Citation

















    ReferenceID:29004




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5942
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197971
                           gb|AAP94697.1|
                           (AY258138) putative ABC transporter subunit [Pseudomonas aeruginosa]
                           247
                           95.54
                           95.54
                           11
                           1273.0
     

     
     
197972
                           dbj|BAC41568.1|
                           (AB088420) putative ABC transporter subunit [Pseudomonas resinovorans]
                           247
                           87.04
                           89.87
                           11
                           1164.0
     

     
     
197973
                           gb|AAO53604.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           247
                           84.61
                           90.28
                           11
                           1155.0
     

     
     
197975
                           gb|AAK65865.1|
                           (AE007306) conserved hypothetical protein [Sinorhizobium meliloti]
                           261
                           45.97
                           59.38
                           27
                           578.0
     

     
     
197974
                           dbj|BAC90894.1|
                           (AP006578) glr2953 [Gloeobacter violaceus PCC 7421]
                           273
                           45.05
                           58.24
                           51
                           596.0
     

     






      

          
GC ORFID: 48944How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1766869Stop: 1767579

          
Length: 711


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCTGGAACCCGGTGGTGGGTTGCACCAAGGTGTCGCCGGGCTGCAAACACTGCTATGCCGAGAACATG 
GCGCGTCGCTTGCAGGCCATGGGCACGCCCGGCTACGAGAACGGCTTTCGCCTCAGCCTGCGCCCAGAGAAA 
CTGCAGGAGCCTCTGCAGCGCAAGAAGCCGACCATCTACTTTGTCAATTCCATGTCTGACCTGTTCCATGAG 
CAGGTGCCGGACACCTACATCGACCAGGTGTTCGCGGTTATCCACCAGGCCTCACAGCACACCTTCCAGATC 
CTCACTAAGCGGGCCGAGCGCCTGGCCGACTATTTCAGCCAGCGCACACCGCCGGCCAACGCTTGGCTGGGG 
GTCTCGGTCGAGGACCGGGAGTACGGCGTGCCCAGAATCGACTGCCTGCGTGGCATCAACGCCGCGATCCGT 
TTCCTCTCCGCGGAACCCTTACTAGAAGACTTGGGTGAACTGAACCTGACTGACATCCATTGGGTCATCGTC 
GGCGGCGAGTCCGGCGCCAAGGCCCGGCCAATGAAGCAGGAGTGGGTGGATAACATCCACCGCCAGTGCGAT 
GCCTTTGGCGCTGCTTTCTTTTTCAAACAATGGGGCGGCTGGGGCTCCGATGGCGTGAAGCGTTCAAAGAAA 
GCTAATGGCCGGCTGCTGAAGGGCCAGACCTGGGATGAAATTCCGCTGCTGACCCTCGCCTGA