ViewGene
Locus Name:
GeneID:
Location:

GeneID:5941
TrivialName: PA14_35840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35840
PAO1 Ortholog Locus:
Sequence Length:645
Protein Length:214
Start: 3189302
Stop: 3189946
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68591.1|AE016490_8 (AE016785) hypothetical protein [Pseudomonas putida KT2440]
Identities = 206/214 (96%), Positives = 207/214 (96%)
Sequence:
ATGACACTACTTGAGACTACCAATGAGGGGGCTGCGGAACCTGTCCGTTTGACTACGCCACTGGGCCAGGCC
ATTGGTAATCTGTTCGCCCGGGCCTTGCCGCTACTGGATGGCAATCCGCCAGGCTCGCTCAAAGTCTTCGTC
TTCGGCGGCTGCGCGGTGCACCTGCTCACCCATGCGCGTGGTAGTGCGGACATCGATGCGGAGATCGAGGCG
GCCCGCGTGCTGCGTAAGGACGAGATCATGGCCGTCTACACACCGCCAGAGGGTTATGAGGACGGCGACGGC
CGCGACTTGCAGGTGTACCTGGACCAGAACTACACCAATGCCCTCGGGCCACTGCACGAGGACTACCGCGAG
CGCGCCATCCCGATGGAGGGTTTCGAGGGTGAGCAGCCGCTGCATATCTTCGTTGCCGCCGGCGTGGATCTG
GCCATCTCCAAGCTCGGCCGCTTTACGGAAAACGATCAATATGATATCGAACAGCTCATCGAATGTGGCCGT
GTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGCGCAATG
CTAGGCTGCCTGAAACTGGTCATAGCGAAGTACCTGGAGGATGGGCGAGATGCCACGTCTGGATCGTAA
Translation:
MTLLETTNEGAAEPVRLTTPLGQAIGNLFARALPLLDGNPPGSLKVFVFGGCAVHLLTHARGSADIDAEIEA
ARVLRKDEIMAVYTPPEGYEDGDGRDLQVYLDQNYTNALGPLHEDYRERAIPMEGFEGEQPLHIFVAAGVDL
AISKLGRFTENDQYDIEQLIECGRVDVGQFVTLATEAIDYAVGNRSAMLGCLKLVIAKYLEDGRDATSGS*
AnnotationID:5942GeneID:5941
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:38
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|18150905|ref|NP_542842.1|  hypothetical protein pWWO_p050 [Pseudomonas putida]
     Length=214
     Score =  411 bits (1057),  Expect = 7e-114
     Identities = 206/214 (96%), Positives = 207/214 (96%), Gaps = 0/214 (0%)

gi|24984592|gb|AAN68591.1|  hypothetical protein [Pseudomonas putida KT2440]
     Length=218
     Score =  411 bits (1057),  Expect = 7e-114
     Identities = 206/214 (96%), Positives = 207/214 (96%), Gaps = 0/214 (0%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:29002




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5941
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197970
                           emb|CAC86782.1|
                           (AJ344068) hypothetical protein [Pseudomonas putida]
                           214
                           96.26
                           96.72
                           0
                           1057.0
     

     
     
197969
                           gb|AAN68591.1|AE016490_8
                           (AE016785) hypothetical protein [Pseudomonas putida KT2440]
                           218
                           94.49
                           94.95
                           4
                           1057.0
     

     






      

          
GC ORFID: 48943How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1764614Stop: 1763970

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACACTACTTGAGACTACCAATGAGGGGGCTGCGGAACCTGTCCGTTTGACTACGCCACTGGGCCAGGCC 
ATTGGTAATCTGTTCGCCCGGGCCTTGCCGCTACTGGATGGCAATCCGCCAGGCTCGCTCAAAGTCTTCGTC 
TTCGGCGGCTGCGCGGTGCACCTGCTCACCCATGCGCGTGGTAGTGCGGACATCGATGCGGAGATCGAGGCG 
GCCCGCGTGCTGCGTAAGGACGAGATCATGGCCGTCTACACACCGCCAGAGGGTTATGAGGACGGCGACGGC 
CGCGACTTGCAGGTGTACCTGGACCAGAACTACACCAATGCCCTCGGGCCACTGCACGAGGACTACCGCGAG 
CGCGCCATCCCGATGGAGGGTTTCGAGGGTGAGCAGCCGCTGCATATCTTCGTTGCCGCCGGCGTGGATCTG 
GCCATCTCCAAGCTCGGCCGCTTTACGGAAAACGATCAATATGATATCGAACAGCTCATCGAATGTGGCCGT 
GTCGATGTCGGCCAGTTTGTTACACTGGCAACAGAGGCAATCGATTATGCCGTGGGCAACCGAAGCGCAATG 
CTAGGCTGCCTGAAACTGGTCATAGCGAAGTACCTGGAGGATGGGCGAGATGCCACGTCTGGATCGTAA