ViewGene
Locus Name:
GeneID:
Location:

GeneID:5940
TrivialName: PA14_35850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35850
PAO1 Ortholog Locus:
Sequence Length:480
Protein Length:159
Start: 3189927
Stop: 3190406
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN68592.1|AE016490_9 (AE016785) hypothetical protein [Pseudomonas putida KT2440]
Identities = 150/158 (94%), Positives = 154/158 (97%)
Sequence:
ATGCCACGTCTGGATCGTAAACAAAGCTTTGGCACGCTCCTGGAGACTGTCACCCAGCAGCGTCTTAGCCAA
GTTGCGTCCGATGCTCTTGTGGAGCTTGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCAGTACTG
CAGCGTGAAGTGGCAAGCAAGCTGCGCGAGCCTGAACAGAAGCTGCGTGCCCTCTATCTCGTCGACCTGCTG
CGTCGCTTTCCCTGTGTATCAACGGACAAAGCCGCGCGCCTAAAAGGCTTTGTCAGCAGTTGGTCGAACCTG
AAACCAGCAGAACGCTCACCTCGTGCGACCCAGCTTGTCTCTCGCTACCAACTCGACAAGCTGGCCTATGAA
TGGGGGCTTGAAGAGGACGTCAGCAAGCAGATGCAGGATGTCCTGGCTTTCCAAACCCGCCATTACGCCGCC
ACCCAGGGCGTGAAGACGGGCTATTCAGAGCCAACGCCCGTAAGCTAG
Translation:
MPRLDRKQSFGTLLETVTQQRLSQVASDALVELAKQLWYEERDLVPVLQREVASKLREPEQKLRALYLVDLL
RRFPCVSTDKAARLKGFVSSWSNLKPAERSPRATQLVSRYQLDKLAYEWGLEEDVSKQMQDVLAFQTRHYAA
TQGVKTGYSEPTPVS*
AnnotationID:5941GeneID:5940
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 17:05:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|24984593|gb|AAN68592.1|  hypothetical protein [Pseudomonas putida KT2440]
     Length=159
     Score =  298 bits (762),  Expect = 5e-80
     Identities = 150/158 (94%), Positives = 154/158 (97%), Gaps = 0/158 (0%)

gi|18150904|ref|NP_542841.1|  hypothetical protein pWWO_p049 [Pseudomonas putida] 
     Length=122
     Score =  217 bits (553),  Expect = 8e-56
     Identities = 108/115 (93%), Positives = 112/115 (97%), Gaps = 0/115 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11783




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16933




  
Author/Investigator(s):
        Greated A, Lambertsen L, Williams PA, Thomas CM.





  
Title:
        Complete sequence of the IncP-9 TOL plasmid pWW0 from Pseudomonas putida.




  
PubMed:
        12534468


MedLine:
        




    
Source:






    
Reference Type:Online 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12534468&dopt=Abstract

















    ReferenceID:29000




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5940
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197967
                           gb|AAN68592.1|AE016490_9
                           (AE016785) hypothetical protein [Pseudomonas putida KT2440]
                           159
                           94.33
                           96.85
                           0
                           762.0
     

     
     
197968
                           emb|CAC86781.1|
                           (AJ344068) hypothetical protein [Pseudomonas putida]
                           159
                           69.18
                           72.95
                           37
                           549.0
     

     






      

          
GC ORFID: 48942How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1763989Stop: 1763510

          
Length: 480


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCACGTCTGGATCGTAAACAAAGCTTTGGCACGCTCCTGGAGACTGTCACCCAGCAGCGTCTTAGCCAA 
GTTGCGTCCGATGCTCTTGTGGAGCTTGCCAAGCAGTTGTGGTACGAAGAGCGCGACCTCGTGCCAGTACTG 
CAGCGTGAAGTGGCAAGCAAGCTGCGCGAGCCTGAACAGAAGCTGCGTGCCCTCTATCTCGTCGACCTGCTG 
CGTCGCTTTCCCTGTGTATCAACGGACAAAGCCGCGCGCCTAAAAGGCTTTGTCAGCAGTTGGTCGAACCTG 
AAACCAGCAGAACGCTCACCTCGTGCGACCCAGCTTGTCTCTCGCTACCAACTCGACAAGCTGGCCTATGAA 
TGGGGGCTTGAAGAGGACGTCAGCAAGCAGATGCAGGATGTCCTGGCTTTCCAAACCCGCCATTACGCCGCC 
ACCCAGGGCGTGAAGACGGGCTATTCAGAGCCAACGCCCGTAAGCTAG