ViewGene
Locus Name:
GeneID:
Location:

GeneID:5936
TrivialName: PA14_35930
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35930
PAO1 Ortholog Locus:
Sequence Length:99
Protein Length:32
Start: 3198149
Stop: 3198051
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01501.1| (AF241171) hypothetical protein [Pseudomonas aeruginosa]
Identities = 29/30 (96%), Positives = 30/30 (100%) to gene #11 of PAGI-1 island.
Sequence:
GTGCcctTGTCGGCGCTCTATGTGTACCGCGCCAACGGCGAATTCGATCGCCTGACCCAGGCTCTGGTCGCT
GGGCTGGAAGAGGAGCGGGGCGCATGA
Translation:
MPLSALYVYRANGEFDRLTQALVAGLEEERGA*
AnnotationID:5937GeneID:5936
AnnotatorUID: danlee
Modification Date/Time: 2005-10-11 17:05:56
Gene Name:PAGI-1(11)
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|12698387|gb|AAK01501.1|  hypothetical protein [Pseudomonas aeruginosa]
     Length=107
     Score = 59.7 bits (143),  Expect = 3e-08
     Identities = 29/30 (96%), Positives = 30/30 (100%), Gaps = 0/30 (0%)

gi|24984388|gb|AAN68404.1|  conserved hypothetical protein [Pseudomonas putida KT2440]
     Length=107
     Score = 53.5 bits (127),  Expect = 2e-06
     Identities = 25/30 (83%), Positives = 28/30 (93%), Gaps = 0/30 (0%)






 
Structural Features:
pfam04341, DUF485, Protein of unknown function, DUF485.
             CD-Length = 102 residues, only  19.6% aligned
             Score = 32.9 bits (75), Expect = 0.008






   
Genomic Context:
Predicted gene #11 of the PAGI-1 island absent in PAO1 but present in a majority of pathogenic P. aeruginosa isolates.   
The PA14 island at this locus, from PA14_35860 to PA14_36030, corresponds to PAGI-1 genes 17 through 2, respectively.






   
Comment:
The first half of the PA14 island (from PA14_35700 through PA14_35850) diverges from PAGI-1 such that 
genes 18 through 51 are absent.  PA14 has 31 ORFs in 35368 bp (from PA14_35700 to PA14_36030), 
whereas PAGI-1 contains 51 ORFs in 51300 bp.


















    ReferenceID:15785




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28992




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38202




  
Author/Investigator(s):
        Liang X, Pham XQ, Olson MV, Lory S.





  
Title:
        Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa.




  
PubMed:
        11208781


MedLine:
        




    
Source:
J Bacteriol. 2001 Feb;183(3):843-53.







    
Reference Type:Journal 







    
Data:


    		




 
URL:









      

          
GC ORFID: 48938How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1755767Stop: 1755865

          
Length: 99


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGCcctTGTCGGCGCTCTATGTGTACCGCGCCAACGGCGAATTCGATCGCCTGACCCAGGCTCTGGTCGCT 
GGGCTGGAAGAGGAGCGGGGCGCATGA