ViewGene
Locus Name:
GeneID:
Location:

GeneID:5932
TrivialName: PA14_35980
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35980
PAO1 Ortholog Locus:
Sequence Length:357
Protein Length:118
Start: 3202511
Stop: 3202155
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01497.1| (AF241171) putative acyl-CoA dehydrogenase [Pseudomonas aeruginosa]
Identities = 117/118 (99%), Positives = 117/118 (99%) to gene #7 of PAGI-1 island.
Sequence:
ATGACCCAGCCCGATGCCCATGAACTGCTCGACATCGCTCGCTCGACGCttcTGGAGCAACTGCTGCCAGCG
CTGCCCGGCGAGCTGCGTTACCCGGCCCTGATGATCGCCAATGCCATGGCCATCGCAGCCCGCGAAAGCCGC
CTGGTGGCTCTGGCCGAGGACCAGGAGCGGACACGTCTGGCCGCCTTGGTCGACGAGGCGCCCGCAGCCTTG
CCCGACCTGCGCCGCCAACTGGCACGGGCCATTCGCCTGGGCAGCCATGACGCCCCGCAAAACCATAGAACC
CTGGTCGAGACATTGCGCCAGGTCACCCTCGCCCGATTGGCCATCAGCAATCCCAAGGCCTTGCCCTGA
Translation:
MTQPDAHELLDIARSTLLEQLLPALPGELRYPALMIANAMAIAARESRLVALAEDQERTRLAALVDEAPAAL
PDLRRQLARAIRLGSHDAPQNHRTLVETLRQVTLARLAISNPKALP*
AnnotationID:5933GeneID:5932
AnnotatorUID: danlee
Modification Date/Time: 2005-10-11 16:04:50
Gene Name:PAGI-1(7)
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|12698383|gb|AAK01497.1|  putative acyl-CoA dehydrogenase [Pseudomonas aeruginosa]
     Length=118
     Score =  222 bits (566),  Expect = 2e-57
     Identities = 117/118 (99%), Positives = 117/118 (99%), Gaps = 0/118 (0%)

gi|26989511|ref|NP_744936.1|  hypothetical protein PP2792 [Pseudomonas putida KT2440]
      Length=118
      Score =  197 bits (502),  Expect = 6e-50
      Identities = 102/118 (86%), Positives = 111/118 (94%), Gaps = 0/118 (0%)







 
Structural Features:






   
Genomic Context:
Predicted gene #X of the PAGI-1 island absent in PAO1 but present in a majority of pathogenic P. aeruginosa isolates.   
The PA14 island at this locus, from PA14_35860 to PA14_36030, corresponds to PAGI-1 genes 17 through 2, respectively.






   
Comment:
The first half of the PA14 island (from PA14_35700 through PA14_35850) diverges from PAGI-1 such that 
genes 18 through 51 are absent.  PA14 has 31 ORFs in 35368 bp (from PA14_35700 to PA14_36030), 
whereas PAGI-1 contains 51 ORFs in 51300 bp.



















    ReferenceID:11768




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28984




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38191




  
Author/Investigator(s):
        Liang,X., Pham,X.Q., Olson,M.V. and Lory,S.





  
Title:
        Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa




  
PubMed:
        11208781


MedLine:
        




    
Source:
J. Bacteriol. 183 (3), 843-853 (2001)






    
Reference Type: 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5932
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197942
                           gb|AAK01497.1|
                           (AF241171) putative acyl-CoA dehydrogenase [Pseudomonas aeruginosa]
                           118
                           99.15
                           99.15
                           0
                           566.0
     

     
     
197943
                           gb|AAN68400.1|AE016472_7
                           (AE016784) hypothetical protein [Pseudomonas putida KT2440]
                           118
                           86.44
                           94.06
                           0
                           502.0
     

     






      

          
GC ORFID: 48934How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1751405Stop: 1751761

          
Length: 357


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCCAGCCCGATGCCCATGAACTGCTCGACATCGCTCGCTCGACGCttcTGGAGCAACTGCTGCCAGCG 
CTGCCCGGCGAGCTGCGTTACCCGGCCCTGATGATCGCCAATGCCATGGCCATCGCAGCCCGCGAAAGCCGC 
CTGGTGGCTCTGGCCGAGGACCAGGAGCGGACACGTCTGGCCGCCTTGGTCGACGAGGCGCCCGCAGCCTTG 
CCCGACCTGCGCCGCCAACTGGCACGGGCCATTCGCCTGGGCAGCCATGACGCCCCGCAAAACCATAGAACC 
CTGGTCGAGACATTGCGCCAGGTCACCCTCGCCCGATTGGCCATCAGCAATCCCAAGGCCTTGCCCTGA