ViewGene

Locus Name:
GeneID:
Location:

GeneID:5931
TrivialName: PA14_35990
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35990
PAO1 Ortholog Locus:
Sequence Length:1197
Protein Length:398
Start: 3203704
Stop: 3202508
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01496.1| (AF241171) FadE36 [Pseudomonas aeruginosa]
Identities = 354/360 (98%), Positives = 354/360 (98%) to gene #6 of PAGI-1 island.
Sequence:
GTGAAACCCGGATTGCTTCGTCGAGCGCCATGGAAAAGCCTGGCGCCAGAGAGCGCGCGGGTTACAGGCATA
TCCCGAAAATTGGCCCAGGCGTTGCTAAAGCTGTCTGACAACATGACTACAGGCAGACCCTACAACCCCATG
AGCACTCCTCCTACGACCGTACGGGACGGCGAGACATTCGTGGCCCCGGACGACCAGCCACTGGTCGAGTTC
ATCCGCGAGCACGCCGCAGCGAAGCGGGTGGTCATCCAGGCACGCCAGCGCCTGAGCGGCGGCGCCATCCAG
GAAAACTGGCTGCTGGACCTGCTGATCGAAGGCGGCCCCTGGGCTGGCGCCCGGCGTTGGGTGCTGCGCAGC
GATGCGCTTTCCGCGCTACCCGCCAGCCTTGACCGCGAACAGGAGTTCGCGGTGCTGCAAGTGGTTCATCAG
GCCGGAGTGAAAGTACCGCGCCCGCTGTGGCTGTGCCGCGATATGCGCGTGCATGGGCGGGTGTTCTTCCTG
ATGGAGTACGTGCCGGGTGTCGCCGCCGGTCGCTTGCTCAGCGCCGGCACCGGCCCCCAGGGCCGGGCGCAG
CTGGCGGCGCAGCTTGGCGCCAACCTGGCGCGCCTGCATCAGGTTCGCCCGCCGTGCGCCACGCTGGATTTC
CTGCCGATGCCAACCCGCTCACCGGCCTTGGCGACCATCGACGCCTATCGCCACTACCTCGACACCCTCGCC
GATGCCTACCCGGTGCTGGAGTGGGGCCTGCGCTGGTGCGAGCTGCACGCACCGCACAACGGCACCCTGTGT
CTGTTGCACCGTGACTACCGCACCGGCAACTACCTGGCCAGCGAACAGGGACTCGAAGCCGTACTCGACTGG
GAGTTCACCGGCTGGGGCGACCCTTGCGAGGACCTAGGCTGGTTCACCGCCCGCTGCTGGCGCTTCACCCGC
CCAGACCTCGAGGCCGGCGGTATCGGCCAACTGGAGGACTTCCTGGGTGGCTACCACGAGGTGTCTCCGCTG
CGTATCGAGCGCAGCCAACTGCACTACTGGCAGGTCATGGCCACCCTGCGCTGGGCGGTGATCGCCCTGCAG
CAAGGCCAGCGCCACCTGTCCGGCGAAGAGCCGTCCATTGAGCTGGCACTGACCGCACGACTGCTGCCGGAG
CTtgAGCTCGACATCCTGCACATGACCGGAGCCGAAGCGCCATGA
Translation:
MKPGLLRRAPWKSLAPESARVTGISRKLAQALLKLSDNMTTGRPYNPMSTPPTTVRDGETFVAPDDQPLVEF
IREHAAAKRVVIQARQRLSGGAIQENWLLDLLIEGGPWAGARRWVLRSDALSALPASLDREQEFAVLQVVHQ
AGVKVPRPLWLCRDMRVHGRVFFLMEYVPGVAAGRLLSAGTGPQGRAQLAAQLGANLARLHQVRPPCATLDF
LPMPTRSPALATIDAYRHYLDTLADAYPVLEWGLRWCELHAPHNGTLCLLHRDYRTGNYLASEQGLEAVLDW
EFTGWGDPCEDLGWFTARCWRFTRPDLEAGGIGQLEDFLGGYHEVSPLRIERSQLHYWQVMATLRWAVIALQ
QGQRHLSGEEPSIELALTARLLPELELDILHMTGAEAP*
AnnotationID:5932GeneID:5931
AnnotatorUID: danlee
Modification Date/Time: 2005-10-11 16:04:53
Gene Name:PAGI-1(6)
Confidence Code:3
GeneProduct:possible aminoglycoside phosphotransferase
Cell Localization:()
Synonyms:FadE36
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|12698382|gb|AAK01496.1|  FadE36 [Pseudomonas aeruginosa]
     Length=360
     Score =  733 bits (1893),  Expect = 0.0
     Identities = 354/360 (98%), Positives = 354/360 (98%), Gaps = 0/360 (0%)

gi|24984382|gb|AAN68399.1|  aminoglycoside phosphotransferase [Pseudomonas putida KT2440]
     Length=376
     Score =  642 bits (1656),  Expect = 0.0
     Identities = 315/360 (87%), Positives = 326/360 (90%), Gaps = 1/360 (0%)

Structural Features:
COG3173, Predicted aminoglycoside phosphotransferase [General function prediction only].
             CD-Length = 321 residues,  81.3% aligned
             Score = 87.4 bits (216), Expect = 3e-18

pfam01636, APH, Phosphotransferase enzyme family.
             CD-Length = 241 residues,  92.5% aligned
             Score = 84.4 bits (208), Expect = 2e-17
Genomic Context:
Predicted gene #6 of the PAGI-1 island absent in PAO1 but present in a majority of pathogenic P. aeruginosa isolates.   
The PA14 island at this locus, from PA14_35860 to PA14_36030, corresponds to PAGI-1 genes 17 through 2, respectively.
Comment:
The first half of the PA14 island (from PA14_35700 through PA14_35850) diverges from PAGI-1 such that 
genes 18 through 51 are absent.  PA14 has 31 ORFs in 35368 bp (from PA14_35700 to PA14_36030), 
whereas PAGI-1 contains 51 ORFs in 51300 bp.
ReferenceID:15781
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28982
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38198
Author/Investigator(s): Liang X, Pham XQ, Olson MV, Lory S.
Title: Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa.
PubMed: 11208781
MedLine:
Source:
J Bacteriol. 2001 Feb;183(3):843-53.
Reference Type:
Data:
URL:
Homologs By Global Alignment
Gene ID:5931

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
197940 gb|AAK01496.1| (AF241171) FadE36 [Pseudomonas aeruginosa] 398 88.94 88.94 38 1893.0
197941 gb|AAN68399.1|AE016472_6 (AE016784) aminoglycoside phosphotransferase [Pseudomonas putida KT2440] 403 79.15 82.38 32 1651.0
GC ORFID: 48933How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1750212Stop: 1751408
Length: 1197
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
GTGAAACCCGGATTGCTTCGTCGAGCGCCATGGAAAAGCCTGGCGCCAGAGAGCGCGCGGGTTACAGGCATA
TCCCGAAAATTGGCCCAGGCGTTGCTAAAGCTGTCTGACAACATGACTACAGGCAGACCCTACAACCCCATG
AGCACTCCTCCTACGACCGTACGGGACGGCGAGACATTCGTGGCCCCGGACGACCAGCCACTGGTCGAGTTC
ATCCGCGAGCACGCCGCAGCGAAGCGGGTGGTCATCCAGGCACGCCAGCGCCTGAGCGGCGGCGCCATCCAG
GAAAACTGGCTGCTGGACCTGCTGATCGAAGGCGGCCCCTGGGCTGGCGCCCGGCGTTGGGTGCTGCGCAGC
GATGCGCTTTCCGCGCTACCCGCCAGCCTTGACCGCGAACAGGAGTTCGCGGTGCTGCAAGTGGTTCATCAG
GCCGGAGTGAAAGTACCGCGCCCGCTGTGGCTGTGCCGCGATATGCGCGTGCATGGGCGGGTGTTCTTCCTG
ATGGAGTACGTGCCGGGTGTCGCCGCCGGTCGCTTGCTCAGCGCCGGCACCGGCCCCCAGGGCCGGGCGCAG
CTGGCGGCGCAGCTTGGCGCCAACCTGGCGCGCCTGCATCAGGTTCGCCCGCCGTGCGCCACGCTGGATTTC
CTGCCGATGCCAACCCGCTCACCGGCCTTGGCGACCATCGACGCCTATCGCCACTACCTCGACACCCTCGCC
GATGCCTACCCGGTGCTGGAGTGGGGCCTGCGCTGGTGCGAGCTGCACGCACCGCACAACGGCACCCTGTGT
CTGTTGCACCGTGACTACCGCACCGGCAACTACCTGGCCAGCGAACAGGGACTCGAAGCCGTACTCGACTGG
GAGTTCACCGGCTGGGGCGACCCTTGCGAGGACCTAGGCTGGTTCACCGCCCGCTGCTGGCGCTTCACCCGC
CCAGACCTCGAGGCCGGCGGTATCGGCCAACTGGAGGACTTCCTGGGTGGCTACCACGAGGTGTCTCCGCTG
CGTATCGAGCGCAGCCAACTGCACTACTGGCAGGTCATGGCCACCCTGCGCTGGGCGGTGATCGCCCTGCAG
CAAGGCCAGCGCCACCTGTCCGGCGAAGAGCCGTCCATTGAGCTGGCACTGACCGCACGACTGCTGCCGGAG
CTtgAGCTCGACATCCTGCACATGACCGGAGCCGAAGCGCCATGA