ViewGene
Locus Name:
GeneID:
Location:

GeneID:5930
TrivialName: PA14_36010
AnnotatorUID: ericdeziel
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36010
PAO1 Ortholog Locus:
Sequence Length:504
Protein Length:167
Start: 3206281
Stop: 3205778
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01494.1| (AF241171) hypothetical protein [Pseudomonas aeruginosa]
Identities = 167/167 (100%), Positives = 167/167 (100%) to gene #4 of PAGI-1 island.
Sequence:
ATGTCCAGGCGCTTGCTTTTCGTGGCCACCCTGGTCGCGACCCTTTCCCTTGCCGCTCATGCCGACGAACCC
CTGCCATCGGTCGAGCAGGTGATGAACGAGCACAAGGAAAAGATCAGGAACCAGCTGGAAACCATCAACTAC
AAGCGCAAACGGATGGTCGAGGCAAACATGGCGCTGGACGGCACCGAAGCCGAGACGTTCTGGCCGATCTAT
TCACGCTACCGAGGCGAGACGGACAGCCTGCACAAGGAGACATTCCAGCTCCTGCTCGAATATGCCCGCGCC
TATGGTTCCGGCAGCATTACCGACGCGGAAGCTTCGAGGATGGTCGACCTCTATCGGGGATTGCAGGAGAAA
CAGCTGGCCGTGCTGCACCGGTACGTGCAGGAAGTGGCCGAGAAGATGTCACCCCGGCGGGCCATGCGTTTC
CTGCAGATCGAAGCGCAACTGGACGCGCTGGAGGCGTTGCAGATCGGCAAGCAGGTTCCGCTGATCAATTGA
Translation:
MSRRLLFVATLVATLSLAAHADEPLPSVEQVMNEHKEKIRNQLETINYKRKRMVEANMALDGTEAETFWPIY
SRYRGETDSLHKETFQLLLEYARAYGSGSITDAEASRMVDLYRGLQEKQLAVLHRYVQEVAEKMSPRRAMRF
LQIEAQLDALEALQIGKQVPLIN*
AnnotationID:5931GeneID:5930
AnnotatorUID: danlee
Modification Date/Time: 2005-10-11 15:03:20
Gene Name:PAGI-1(4)
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|12698380|gb|AAK01494.1|  hypothetical protein [Pseudomonas aeruginosa]
     Length=167
     Score =  325 bits (833),  Expect = 3e-88
     Identities = 167/167 (100%), Positives = 167/167 (100%), Gaps = 0/167 (0%)






 
Structural Features:






   
Genomic Context:
Predicted gene #4 of the PAGI-1 island absent in PAO1 but present in a majority of pathogenic P. aeruginosa isolates.   
The PA14 island at this locus, from PA14_35860 to PA14_36030, corresponds to PAGI-1 genes 17 through 2, respectively.






   
Comment:
The first half of the PA14 island (from PA14_35700 through PA14_35850) diverges from PAGI-1 such that 
genes 18 through 51 are absent.  PA14 has 31 ORFs in 35368 bp (from PA14_35700 to PA14_36030), 
whereas PAGI-1 contains 51 ORFs in 51300 bp.


















    ReferenceID:11764




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28980




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38197




  
Author/Investigator(s):
        Liang X, Pham XQ, Olson MV, Lory S.





  
Title:
        Identification of a genomic island present in the majority of pathogenic isolates of Pseudomonas aeruginosa.




  
PubMed:
        11208781


MedLine:
        




    
Source:
J Bacteriol. 2001 Feb;183(3):843-53.






    
Reference Type: 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5930
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197939
                           gb|AAK01494.1|
                           (AF241171) hypothetical protein [Pseudomonas aeruginosa]
                           167
                           99.99
                           99.99
                           0
                           833.0
     

     






      

          
GC ORFID: 48932How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1747635Stop: 1748138

          
Length: 504


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCCAGGCGCTTGCTTTTCGTGGCCACCCTGGTCGCGACCCTTTCCCTTGCCGCTCATGCCGACGAACCC 
CTGCCATCGGTCGAGCAGGTGATGAACGAGCACAAGGAAAAGATCAGGAACCAGCTGGAAACCATCAACTAC 
AAGCGCAAACGGATGGTCGAGGCAAACATGGCGCTGGACGGCACCGAAGCCGAGACGTTCTGGCCGATCTAT 
TCACGCTACCGAGGCGAGACGGACAGCCTGCACAAGGAGACATTCCAGCTCCTGCTCGAATATGCCCGCGCC 
TATGGTTCCGGCAGCATTACCGACGCGGAAGCTTCGAGGATGGTCGACCTCTATCGGGGATTGCAGGAGAAA 
CAGCTGGCCGTGCTGCACCGGTACGTGCAGGAAGTGGCCGAGAAGATGTCACCCCGGCGGGCCATGCGTTTC 
CTGCAGATCGAAGCGCAACTGGACGCGCTGGAGGCGTTGCAGATCGGCAAGCAGGTTCCGCTGATCAATTGA