ViewGene
Locus Name:
GeneID:
Location:

GeneID:593
TrivialName: PA14_39860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39860
PAO1 Ortholog Locus:PA1907
Sequence Length:1641
Protein Length:546
Start: 3553065
Stop: 3554705
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05295.1|AE004616_9 (AE004616) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 542/546 (99%), Positives = 543/546 (99%)
Sequence:
ATGACCGCTGTCGACCTGCTGCTGGTCGCGACCCTGCTGGCGGCCCTGCTCGCCTGGTGGATACCCGCCCTG
CCCGGCCGCCGTGGCCTGCTGGCGCTCGCCTCGACGCTGGCGCTCGGCGCCGGCCTGTACGCTGCATGGGAC
GACCGCTGGCAAGCCGGCGTCGGCGCCTTCGCCGGTTTCTCCCTGCTGCTCGGCGCCTGCCTGCGCCGGAAG
CCCGTGCGCGGCCTGCCGTTCCGGACCGGTTCGCTATACGGCCTGCTGGTGCTGCTGGCAATCGCCGCGCTG
TACCTGTTCCCGGTCGCGCCGCTGCCGGCGCCGAGCGGCCCCTATGCGGTCGGCGTGCGCGATTTCGAACTG
GACGACCCCAGCCGACCCGGCCTGCTCGGCGCCCCGGCCGGACAACCGCGGCGCCTGCTGGTACGCGCCTGG
TACCCGGCACGCCCGATCGCCGGCGCCGCGCCGCGTCACTATTTCGACCCAGGCGAGGCACGCAGCACCGCG
CGAGGCTTCGGTGAAATACTCGGCTTTCCGCCGTTGCTCACCTACCTCAAGCACCTGCGCACCAATTCCTAT
CCGGACGCCCCGCTGCGCGACGATTCCGCTCGCCTGCCGGTGGTGTTCTACAGCCATGGCTACAGCGCCTTC
GCCGGCGGCAACTGGACCCTGATGGAAGAACTGGCCAGCCACGGCTACGCGGTCTACGCCATCCAGCACAGC
GGCGACGCGTCGCCGACCCGCCTGCCCGACGGCACGCTGCTGCCCATGGACCCCGGGCTGGTCGAACACCTG
CGCCGGGCCGCCCACGACGGCTTGCCGCAGGCCATGCGCCAGGGCTATGTCAGCGACGATCTCGACCAGCGC
CTCGACGGCCAGTTGCACACCGCCCTCGACCTGCCCGCCCCGGCCAACCGCGCCGTCAACCTCAGCGCGCCG
GTATGGCTGGCCGACCGCCTGTTCGTCCATGACCGCCTGCAGGCCGGCGAGGTCCCGGACAGGGTCGCCGAC
CTGGTGGCCGCCAGTGACTTCGCGCACACCGGCGAGATGGGCATGTCCTTCGGCGGCTCGACCACCGGCGCG
GTCTGCATGGTCGACCGACGCTGCGCGGCGGCCGTCAACCTCGACGGCGGCGACTTCGACTTCGCGCCCTTC
GATAGCGATTTCCCGGCGCCGCTGCTGATGCTGCACGCCGACCTTGGCAACTTCTACCGGCTGTTCGGCATC
GAAGCGCCGGCCCGCCCGAGAAGCTTCAACGACTTTTCCTACGAACGCTTCGAGCACGCCGGCCAGCGCCAG
GACATTCATCGCCTGGTACTGCGCGATTCGGCCCATGCCGGGCTTACCGACAATCCGCTGTTCATCCGCCGG
CCGCTGCGCGACGGGCTGCTCGGCTCGGCACCGACGGAAGTCCTCATCCAGGCTCCCAATGCCCTGGTGCTG
GGTTTCTTCGATCACTACCTGCGCGGCCGCGCCAACGACTTTCCGCAAGCGCAGATGGCGCGCTTCCCCGCC
TGGCTGACGCGCTACGACAACTCGGCGGTGCGCGACTGGTGGCTGGCCAAGCCGGAAGCCCAGCGCCTGGCG
CTGCGACAACGCATCGACGATATGAAACGGCGCAAGACCGGGCTGGATCTTCCCTGA
Translation:
MTAVDLLLVATLLAALLAWWIPALPGRRGLLALASTLALGAGLYAAWDDRWQAGVGAFAGFSLLLGACLRRK
PVRGLPFRTGSLYGLLVLLAIAALYLFPVAPLPAPSGPYAVGVRDFELDDPSRPGLLGAPAGQPRRLLVRAW
YPARPIAGAAPRHYFDPGEARSTARGFGEILGFPPLLTYLKHLRTNSYPDAPLRDDSARLPVVFYSHGYSAF
AGGNWTLMEELASHGYAVYAIQHSGDASPTRLPDGTLLPMDPGLVEHLRRAAHDGLPQAMRQGYVSDDLDQR
LDGQLHTALDLPAPANRAVNLSAPVWLADRLFVHDRLQAGEVPDRVADLVAASDFAHTGEMGMSFGGSTTGA
VCMVDRRCAAAVNLDGGDFDFAPFDSDFPAPLLMLHADLGNFYRLFGIEAPARPRSFNDFSYERFEHAGQRQ
DIHRLVLRDSAHAGLTDNPLFIRRPLRDGLLGSAPTEVLIQAPNALVLGFFDHYLRGRANDFPQAQMARFPA
WLTRYDNSAVRDWWLAKPEAQRLALRQRIDDMKRRKTGLDLP*
AnnotationID:602GeneID:593
AnnotatorUID: diggins
Modification Date/Time: 2005-06-05 18:06:32
Gene Name:
Confidence Code:3
GeneProduct:putative dienelactone hydrolase
Cell Localization:()
Synonyms:PA1907
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs: COG4188
Secondary Functional Category(ies):
EC Number:3.1.1.45
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4188, COG4188, Predicted dienelactone hydrolase
CD-Length = 365 residues, 100.0% aligned
Score =  192 bits (489), Expect = 8e-50
Identities = 79/418 (18%), Positives = 129/418 (30%), Gaps = 81/418 (19%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1189




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18331




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37030




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:593_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:593
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1014
                           PA1907_tr
                           translation of PA1907
                           546
                           99.26
                           99.45
                           0
                           2862.0
     

     
     
39724
                           gb|AAG05295.1|AE004616_9
                           (AE004616) hypothetical protein PA1907 [Pseudomonas aeruginosa PAO1]
                           546
                           99.26
                           99.45
                           0
                           2862.0
     

     






      

          
GC ORFID: 43595How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1907Glimmer Score: 

          
Start: 1400846Stop: 1399206

          
Length: 1641


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1907 translation of PA1907Homolog Bit Score 1107.0

          
Other Homologs:  t_PA1907 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCTGTCGACCTGCTGCTGGTCGCGACCCTGCTGGCGGCCCTGCTCGCCTGGTGGATACCCGCCCTG 
CCCGGCCGCCGTGGCCTGCTGGCGCTCGCCTCGACGCTGGCGCTCGGCGCCGGCCTGTACGCTGCATGGGAC 
GACCGCTGGCAAGCCGGCGTCGGCGCCTTCGCCGGTTTCTCCCTGCTGCTCGGCGCCTGCCTGCGCCGGAAG 
CCCGTGCGCGGCCTGCCGTTCCGGACCGGTTCGCTATACGGCCTGCTGGTGCTGCTGGCAATCGCCGCGCTG 
TACCTGTTCCCGGTCGCGCCGCTGCCGGCGCCGAGCGGCCCCTATGCGGTCGGCGTGCGCGATTTCGAACTG 
GACGACCCCAGCCGACCCGGCCTGCTCGGCGCCCCGGCCGGACAACCGCGGCGCCTGCTGGTACGCGCCTGG 
TACCCGGCACGCCCGATCGCCGGCGCCGCGCCGCGTCACTATTTCGACCCAGGCGAGGCACGCAGCACCGCG 
CGAGGCTTCGGTGAAATACTCGGCTTTCCGCCGTTGCTCACCTACCTCAAGCACCTGCGCACCAATTCCTAT 
CCGGACGCCCCGCTGCGCGACGATTCCGCTCGCCTGCCGGTGGTGTTCTACAGCCATGGCTACAGCGCCTTC 
GCCGGCGGCAACTGGACCCTGATGGAAGAACTGGCCAGCCACGGCTACGCGGTCTACGCCATCCAGCACAGC 
GGCGACGCGTCGCCGACCCGCCTGCCCGACGGCACGCTGCTGCCCATGGACCCCGGGCTGGTCGAACACCTG 
CGCCGGGCCGCCCACGACGGCTTGCCGCAGGCCATGCGCCAGGGCTATGTCAGCGACGATCTCGACCAGCGC 
CTCGACGGCCAGTTGCACACCGCCCTCGACCTGCCCGCCCCGGCCAACCGCGCCGTCAACCTCAGCGCGCCG 
GTATGGCTGGCCGACCGCCTGTTCGTCCATGACCGCCTGCAGGCCGGCGAGGTCCCGGACAGGGTCGCCGAC 
CTGGTGGCCGCCAGTGACTTCGCGCACACCGGCGAGATGGGCATGTCCTTCGGCGGCTCGACCACCGGCGCG 
GTCTGCATGGTCGACCGACGCTGCGCGGCGGCCGTCAACCTCGACGGCGGCGACTTCGACTTCGCGCCCTTC 
GATAGCGATTTCCCGGCGCCGCTGCTGATGCTGCACGCCGACCTTGGCAACTTCTACCGGCTGTTCGGCATC 
GAAGCGCCGGCCCGCCCGAGAAGCTTCAACGACTTTTCCTACGAACGCTTCGAGCACGCCGGCCAGCGCCAG 
GACATTCATCGCCTGGTACTGCGCGATTCGGCCCATGCCGGGCTTACCGACAATCCGCTGTTCATCCGCCGG 
CCGCTGCGCGACGGGCTGCTCGGCTCGGCACCGACGGAAGTCCTCATCCAGGCTCCCAATGCCCTGGTGCTG 
GGTTTCTTCGATCACTACCTGCGCGGCCGCGCCAACGACTTTCCGCAAGCGCAGATGGCGCGCTTCCCCGCC 
TGGCTGACGCGCTACGACAACTCGGCGGTGCGCGACTGGTGGCTGGCCAAGCCGGAAGCCCAGCGCCTGGCG 
CTGCGACAACGCATCGACGATATGAAACGGCGCAAGACCGGGCTGGATCTTCCCTGA