ViewGene

Locus Name:
GeneID:
Location:

GeneID:5923
TrivialName: PA14_36370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36370
PAO1 Ortholog Locus:PA2181
Sequence Length:1215
Protein Length:404
Start: 3240360
Stop: 3239146
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05569.1|AE004645_3 (AE004645) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 364/377 (96%), Positives = 367/377 (97%)
Sequence:
ATGACCCACGACCTGGCCGCCAGCGGCCTTCGCTTCGGCATCGAGGAAGAATTCTTCCTGCTCGATGCCTCC
GACCTGGACATCGTCCGCTCCGCACCCGCCGGATTCGTCGCGGCCTGCCGCGACACGCTCGGCGAGCATTTC
GCCGAGGAGATGTTCGAATGCCAGGTCGAGGTGGCCAGCCCGGTGTTCTCCACCCTGGCCGAGGCCGCGCGC
TTCCACGGGCAGGCCCGGCAACGCCTGGCGCATCTGGCCATGGACTTCGGCCTGCGCTCGCTCTGCGTCGGC
ACCCATCCCTTCGCCGACTGGCGGCGGGCGCGAAGCAACCCGGCGGCGCACTTCGCCCGCCTGTTCGAGGAC
CAGGGGCGGGTGGCCCGGCGCAGCCTGGTCTGCGGCCTGCACGTGCATGTGGAGATACCGCCGAGCCACGAC
CGCATGGCCGTGCTCCAGCGCGTGTTGCCGTGGCTGCCGCTGCTGCTGGCGTTGAGCGCATCCTCGCCGTTC
CGCGGCGGCCGGCGCAGCGGCCTGGCGAGCTATCGACGGGCGCTGTGCGGCGAGTGGCCGAGGATGAACATT
CCTCCTGCCTTGCCCGACGAGGACGCCTATCGCCGCCACCTGGCGCTGCTGCGCGAGGCCGGCTGCATCCGC
GAGGATGGCCAGGTCTGGTGGATGATCCGGCCGTCATCCCATGTGCCGACCCTGGAGCTGCGTATCTGCGAC
GCCTGCCCGCGCCTGGCCGACGCGCTGAGCCTGGCCGGGCTGTTCAGGGCGCTGGTGGGCGAAGCGCTAGGC
GCGGGCCCGCGTACGTTGCCGGTCGCGCGCGACGCCTGCCTGGAGGAAAACTATTGGCAGGCGCTGCGTTAC
GGTTGCGCCGGCCGCTATCTCGTCGGCGGCCGCGCCGTAGGTGCCGGGGACTGGCTGGAAATGGCCTGGCGA
CAGTGCCGGCCGCAGGCCCGCCAGGGCAACGAATGGGCCTACGAGCATGCCCGTGGATTGCTCGGAGAGACC
TCCGCCAGTCGCCAGTTGCGGCGCTACCAGACATTGCGCGCAGCGGGCCAGGAACGGCACGTGGCGCTGCGC
CGGCTGGTGGAAGAACTGCTGGAGGAGAATCTCCAGCCGGCCTTGGCCGGTCCGGCCGGCAAGCGCGCCCAC
GAAGGCGGCCGGTCATTCCGTCCGGCCGCTGGAGCGCCGATGTCAATCCGCGGTCAGGAGTAG
Translation:
MTHDLAASGLRFGIEEEFFLLDASDLDIVRSAPAGFVAACRDTLGEHFAEEMFECQVEVASPVFSTLAEAAR
FHGQARQRLAHLAMDFGLRSLCVGTHPFADWRRARSNPAAHFARLFEDQGRVARRSLVCGLHVHVEIPPSHD
RMAVLQRVLPWLPLLLALSASSPFRGGRRSGLASYRRALCGEWPRMNIPPALPDEDAYRRHLALLREAGCIR
EDGQVWWMIRPSSHVPTLELRICDACPRLADALSLAGLFRALVGEALGAGPRTLPVARDACLEENYWQALRY
GCAGRYLVGGRAVGAGDWLEMAWRQCRPQARQGNEWAYEHARGLLGETSASRQLRRYQTLRAAGQERHVALR
RLVEELLEENLQPALAGPAGKRAHEGGRSFRPAAGAPMSIRGQE*
AnnotationID:5924GeneID:5923
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:38
Gene Name:
Confidence Code:3
GeneProduct:putative ligase
Cell Localization:()
Synonyms:PA2181
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04107
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
pfam04107, GCS2, Glutamate-cysteine ligase family 2(GCS2).
CD-Length = 290 residues, 100.0% aligned
Score =  257 bits (659), Expect = 1e-69
Identities = 108/290 (37%), Positives = 142/290 (48%), Gaps = 9/290 (3%)
Genomic Context:
Comment:
ReferenceID:11751
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28966
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32540
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:5923_cdd.html
URL:
Homologs By Global Alignment
Gene ID:5923

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7936 PA2181_tr translation of PA2181 404 90.09 90.84 27 1921.0
197935 gb|AAG05569.1|AE004645_3 (AE004645) hypothetical protein PA2181 [Pseudomonas aeruginosa PAO1] 404 90.09 90.84 27 1921.0
197936 gb|AAN68860.1|AE016518_6 (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440] 413 37.77 51.08 54 712.0
GC ORFID: 48925How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1713556Stop: 1714770
Length: 1215
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2181 translation of PA2181Homolog Bit Score 744.0
Other Homologs: t_PA2181 translation of PA2181 (BLASTP 744)
GC ORF Sequence
ATGACCCACGACCTGGCCGCCAGCGGCCTTCGCTTCGGCATCGAGGAAGAATTCTTCCTGCTCGATGCCTCC
GACCTGGACATCGTCCGCTCCGCACCCGCCGGATTCGTCGCGGCCTGCCGCGACACGCTCGGCGAGCATTTC
GCCGAGGAGATGTTCGAATGCCAGGTCGAGGTGGCCAGCCCGGTGTTCTCCACCCTGGCCGAGGCCGCGCGC
TTCCACGGGCAGGCCCGGCAACGCCTGGCGCATCTGGCCATGGACTTCGGCCTGCGCTCGCTCTGCGTCGGC
ACCCATCCCTTCGCCGACTGGCGGCGGGCGCGAAGCAACCCGGCGGCGCACTTCGCCCGCCTGTTCGAGGAC
CAGGGGCGGGTGGCCCGGCGCAGCCTGGTCTGCGGCCTGCACGTGCATGTGGAGATACCGCCGAGCCACGAC
CGCATGGCCGTGCTCCAGCGCGTGTTGCCGTGGCTGCCGCTGCTGCTGGCGTTGAGCGCATCCTCGCCGTTC
CGCGGCGGCCGGCGCAGCGGCCTGGCGAGCTATCGACGGGCGCTGTGCGGCGAGTGGCCGAGGATGAACATT
CCTCCTGCCTTGCCCGACGAGGACGCCTATCGCCGCCACCTGGCGCTGCTGCGCGAGGCCGGCTGCATCCGC
GAGGATGGCCAGGTCTGGTGGATGATCCGGCCGTCATCCCATGTGCCGACCCTGGAGCTGCGTATCTGCGAC
GCCTGCCCGCGCCTGGCCGACGCGCTGAGCCTGGCCGGGCTGTTCAGGGCGCTGGTGGGCGAAGCGCTAGGC
GCGGGCCCGCGTACGTTGCCGGTCGCGCGCGACGCCTGCCTGGAGGAAAACTATTGGCAGGCGCTGCGTTAC
GGTTGCGCCGGCCGCTATCTCGTCGGCGGCCGCGCCGTAGGTGCCGGGGACTGGCTGGAAATGGCCTGGCGA
CAGTGCCGGCCGCAGGCCCGCCAGGGCAACGAATGGGCCTACGAGCATGCCCGTGGATTGCTCGGAGAGACC
TCCGCCAGTCGCCAGTTGCGGCGCTACCAGACATTGCGCGCAGCGGGCCAGGAACGGCACGTGGCGCTGCGC
CGGCTGGTGGAAGAACTGCTGGAGGAGAATCTCCAGCCGGCCTTGGCCGGTCCGGCCGGCAAGCGCGCCCAC
GAAGGCGGCCGGTCATTCCGTCCGGCCGCTGGAGCGCCGATGTCAATCCGCGGTCAGGAGTAG