ViewGene

Locus Name:
GeneID:
Location:

GeneID:5909
TrivialName: PA14_36900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36900
PAO1 Ortholog Locus:
Sequence Length:216
Protein Length:71
Start: 3287711
Stop: 3287496
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69565.1|AE016590_5 (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Sequence:
ATGGATACCGCCTACCTGATCCTCGCGCTGCTGGTCCTGTTGCTCCTGGTGGATGCCTGGGCCATCAACAGC
GTGCTCCGCAGCGACAGCTCCGCCAGTCGCAAGCTCGGCTGGTCGCTGCTGATCCTGCTCCTGCCCGTGCTC
GGCCTGGTCCTCTGGGGCTGGACCGGCCCCCGTGGCTTGCGCCCGGTGACCTCACCGGAACACAGCAAGTGA
Translation:
MDTAYLILALLVLLLLVDAWAINSVLRSDSSASRKLGWSLLILLLPVLGLVLWGWTGPRGLRPVTSPEHSK*
AnnotationID:5910GeneID:5909
AnnotatorUID: danlee
Modification Date/Time: 2006-02-07 13:01:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|84327437|ref|ZP_00975456.1|  hypothetical protein Paer2_01001248 [Pseudomonas aeruginosa 2192]
 gi|84321128|ref|ZP_00969490.1|  hypothetical protein PaerC_01001082 [Pseudomonas aeruginosa C3719]
Length=71

 Score =  143 bits (360),  Expect = 2e-33
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

gi|9948156|gb|AAG05527.1|  hypothetical protein PA2139 [Pseudomonas aeruginosa PAO1]
 gi|15597335|ref|NP_250829.1|  hypothetical protein PA2139 [Pseudomonas aeruginosa PAO1]
Length=40

 Score = 57.8 bits (138),  Expect = 1e-07
 Identities = 29/30 (96%), Positives = 30/30 (100%), Gaps = 0/30 (0%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
Confirmed frame-shift results in failure to align after the first 29 amino acids of PAO1 PA2139 
(29/29 identity in N-terminus).
ReferenceID:11728
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:28938
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 48911How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 1666203Stop: 1666418
Length: 216
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGGATACCGCCTACCTGATCCTCGCGCTGCTGGTCCTGTTGCTCCTGGTGGATGCCTGGGCCATCAACAGC
GTGCTCCGCAGCGACAGCTCCGCCAGTCGCAAGCTCGGCTGGTCGCTGCTGATCCTGCTCCTGCCCGTGCTC
GGCCTGGTCCTCTGGGGCTGGACCGGCCCCCGTGGCTTGCGCCCGGTGACCTCACCGGAACACAGCAAGTGA