ViewGene
Locus Name:
GeneID:
Location:

GeneID:5904
TrivialName: PA14_37090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37090
PAO1 Ortholog Locus:PA2125
Sequence Length:1449
Protein Length:482
Start: 3305528
Stop: 3304080
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05513.1|AE004640_2 (AE004640) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 476/482 (98%), Positives = 479/482 (99%)
Sequence:
ATGAACGGACACGCCAGACACTGGATCGACGGCGCATGGCTCGATTCCGCGCAGCGGGGACAATCCTTCGAC
CCGGCCAGCGGCCAGCCGATCGGCACCTACGCCGACGGCGGGCGGGCCGAGGCCGATGCGGCGATCGCCGCC
GCTGTGCGCGCCTTCGAAGATGGTCCCTGGAAGGACGACCACGCGCTGCGCGCGACAGCCCTGGAGGAAATC
GCCGCGGCCTTCGAGCGGCATGCCGATGCGCTCATCGACCTGCTTGCCCTGGAGAACGGCAAGATCAAGCCC
GAGGCTGCCTTCGAGGTCGGCATGGTGCCGGGCAAGCTGCGCTACTACGCCGGCCTGGCGCGCAGCGAACGG
GGCACCAGCGGCACGCCGCGCCCCGACGTGGTGTCGCTGGTGCTGCGCGAGCCGATGGGCGTCGCCGGTATC
ATCGTGCCGTGGAATTCACCGGTGGTGCTGATGATCCGCTCCCTGGCGCCGGCGCTGGCCGCCGGTACCACC
ACGGTGGTGAAGATGCCGGGGCAGACCGCGCAGACCAACGCCCTGGTCGCGCGGATCATCGCCGAAGCGCCG
TCGCTGCCTGCCGGGGCGGTGAACATCTTCAGCGAATCGGGTTCCGAAGGCGCCCGGCGATTGATCGACGCG
GCCGAGGTGCCGGTGATCAGCTTCACCGGCTCGAGCGCCACCGGCCGAGCGATTTCCGCCGCCGGCGCGCGG
CACCTGAAGCGCTTCGGCCTGGAACTGGGCGGCAAGACACCGCACCTGGTGTTCGACGACGCCGACCTGGAC
GCCGCCTTGCCCGTGCTGGAGAAGTCGCTGACGGTGTTCGCCGGGCAGTTCTGCATGACCGGTTCGCGCCTG
CTGGTGCAGCGCGGCGTTGCCGAACGGCTACGCGAACGCCTGGCGCAGCGCCTGGAAAACCTGCGCGTGGGG
CCGGCGGCGGACCCGCGCAGCGACATGGGGCCGCTGATCGACAAGGCCAACGTCGAGCGCGTCGAGCGAGCC
GTACGCCAGGCCATCGCCGCCGGCGCGCGGGTGGTGGTCCGCGGCGGCCCGGTAACCGAGGGCGAGCTGGCG
GCCGGCGCCTTCTACCGTCCGACCCTGCTGGAGGTCGATGATCCGGACCTGGACATCGTGCAACAGGAAACC
TTCGGACCGGTGCTGACCCTGCAGGTATTCGACCGCGAGGAGGAGGGCGTCGCCCTGGCCAACCGCAGCGAG
TACGGGCTGGCGGCCGGGGTCTGGACCCGCGAGGTCGCGCGTGCCTTCCGGGTGGCGCGGAAGATCCGCGCC
GGCACCGTGTGGATCAACGACTGGGCCAAGGTCTACGACGAATTCGAGGAGGGCGGCTACCGCCAGTCCGGc
ctCGGCCGGCTGAACGGGGTCGCCGCCctGGACGACTTCGTCGAGTACAAGCACATCAGCCTGACCACCGGC
GCGGcctGA
Translation:
MNGHARHWIDGAWLDSAQRGQSFDPASGQPIGTYADGGRAEADAAIAAAVRAFEDGPWKDDHALRATALEEI
AAAFERHADALIDLLALENGKIKPEAAFEVGMVPGKLRYYAGLARSERGTSGTPRPDVVSLVLREPMGVAGI
IVPWNSPVVLMIRSLAPALAAGTTTVVKMPGQTAQTNALVARIIAEAPSLPAGAVNIFSESGSEGARRLIDA
AEVPVISFTGSSATGRAISAAGARHLKRFGLELGGKTPHLVFDDADLDAALPVLEKSLTVFAGQFCMTGSRL
LVQRGVAERLRERLAQRLENLRVGPAADPRSDMGPLIDKANVERVERAVRQAIAAGARVVVRGGPVTEGELA
AGAFYRPTLLEVDDPDLDIVQQETFGPVLTLQVFDREEEGVALANRSEYGLAAGVWTREVARAFRVARKIRA
GTVWINDWAKVYDEFEEGGYRQSGLGRLNGVAALDDFVEYKHISLTTGAA*
AnnotationID:5905GeneID:5904
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:08
Gene Name:
Confidence Code:3
GeneProduct:putative aldehyde dehydrogenase
Cell Localization:()
Synonyms:gbsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative glycine betaine aldehyde dehydrogenase
Functional Category Confidence Code:5
COGs:COG1012,pfam00171
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL45893.1| (AE008943) aldehyde dehydrogenase [betaine] [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 484

 Score =  596 bits (1536), Expect = e-169
 Identities = 290/476 (60%), Positives = 375/476 (78%)

>dbj|BAC51587.1| (AP005958) aldehyde dehydrogenase [Bradyrhizobium japonicum USDA
           110]
          Length = 493

 Score =  318 bits (816), Expect = 4e-86
 Identities = 190/482 (39%), Positives = 277/482 (57%), Gaps = 10/482 (2%)

>emb|CAB15084.1| (Z99119) glycine betaine aldehyde dehydrogenase [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 490

 Score =  314 bits (805), Expect = 7e-85
 Identities = 183/480 (38%), Positives = 273/480 (56%), Gaps = 7/480 (1%)






 
Structural Features:
COG1012, PutA, NAD-dependent aldehyde dehydrogenases 
[Energy production and conversion]
CD-Length = 472 residues, 100.0% aligned
Score =  415 bits (1067), Expect = 8e-117
Identities = 206/480 (42%), Positives = 273/480 (56%), Gaps = 10/480 (2%)

pfam00171, Aldedh, Aldehyde dehydrogenase family. 
CD-Length = 464 residues,  99.4% aligned
Score =  391 bits (1005), Expect = 1e-109
Identities = 183/471 (38%), Positives = 263/471 (55%), Gaps = 12/471 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:11718




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28928




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32596




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:5904_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5904
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7933
                           PA2125_tr
                           translation of PA2125
                           482
                           98.75
                           99.37
                           0
                           2414.0
     

     
     
197927
                           gb|AAG05513.1|AE004640_2
                           (AE004640) probable aldehyde dehydrogenase [Pseudomonas aeruginosa PAO1]
                           482
                           98.75
                           99.37
                           0
                           2414.0
     

     
     
197928
                           gb|AAL45893.1|
                           (AE008943) aldehyde dehydrogenase [betaine] [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           484
                           59.91
                           77.47
                           2
                           1529.0
     

     
     
197929
                           gb|AAK90575.1|
                           (AE007890) AGR_pAT_283p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           521
                           55.66
                           71.97
                           39
                           1529.0
     

     






      

          
GC ORFID: 48906How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1648386Stop: 1649834

          
Length: 1449


          
Start Codon: ATGTruncated Start:

          
Stop Codon: tGATruncated Stop: 

          
Homolog: t_PA2125 translation of PA2125Homolog Bit Score 934.0

          
Other Homologs:  t_PA2125 translation of PA2125 (BLASTP 934)

          
GC ORF Sequence

           
ATGAACGGACACGCCAGACACTGGATCGACGGCGCATGGCTCGATTCCGCGCAGCGGGGACAATCCTTCGAC 
CCGGCCAGCGGCCAGCCGATCGGCACCTACGCCGACGGCGGGCGGGCCGAGGCCGATGCGGCGATCGCCGCC 
GCTGTGCGCGCCTTCGAAGATGGTCCCTGGAAGGACGACCACGCGCTGCGCGCGACAGCCCTGGAGGAAATC 
GCCGCGGCCTTCGAGCGGCATGCCGATGCGCTCATCGACCTGCTTGCCCTGGAGAACGGCAAGATCAAGCCC 
GAGGCTGCCTTCGAGGTCGGCATGGTGCCGGGCAAGCTGCGCTACTACGCCGGCCTGGCGCGCAGCGAACGG 
GGCACCAGCGGCACGCCGCGCCCCGACGTGGTGTCGCTGGTGCTGCGCGAGCCGATGGGCGTCGCCGGTATC 
ATCGTGCCGTGGAATTCACCGGTGGTGCTGATGATCCGCTCCCTGGCGCCGGCGCTGGCCGCCGGTACCACC 
ACGGTGGTGAAGATGCCGGGGCAGACCGCGCAGACCAACGCCCTGGTCGCGCGGATCATCGCCGAAGCGCCG 
TCGCTGCCTGCCGGGGCGGTGAACATCTTCAGCGAATCGGGTTCCGAAGGCGCCCGGCGATTGATCGACGCG 
GCCGAGGTGCCGGTGATCAGCTTCACCGGCTCGAGCGCCACCGGCCGAGCGATTTCCGCCGCCGGCGCGCGG 
CACCTGAAGCGCTTCGGCCTGGAACTGGGCGGCAAGACACCGCACCTGGTGTTCGACGACGCCGACCTGGAC 
GCCGCCTTGCCCGTGCTGGAGAAGTCGCTGACGGTGTTCGCCGGGCAGTTCTGCATGACCGGTTCGCGCCTG 
CTGGTGCAGCGCGGCGTTGCCGAACGGCTACGCGAACGCCTGGCGCAGCGCCTGGAAAACCTGCGCGTGGGG 
CCGGCGGCGGACCCGCGCAGCGACATGGGGCCGCTGATCGACAAGGCCAACGTCGAGCGCGTCGAGCGAGCC 
GTACGCCAGGCCATCGCCGCCGGCGCGCGGGTGGTGGTCCGCGGCGGCCCGGTAACCGAGGGCGAGCTGGCG 
GCCGGCGCCTTCTACCGTCCGACCCTGCTGGAGGTCGATGATCCGGACCTGGACATCGTGCAACAGGAAACC 
TTCGGACCGGTGCTGACCCTGCAGGTATTCGACCGCGAGGAGGAGGGCGTCGCCCTGGCCAACCGCAGCGAG 
TACGGGCTGGCGGCCGGGGTCTGGACCCGCGAGGTCGCGCGTGCCTTCCGGGTGGCGCGGAAGATCCGCGCC 
GGCACCGTGTGGATCAACGACTGGGCCAAGGTCTACGACGAATTCGAGGAGGGCGGCTACCGCCAGTCCGGc 
ctCGGCCGGCTGAACGGGGTCGCCGCCctGGACGACTTCGTCGAGTACAAGCACATCAGCCTGACCACCGGC 
GCGGcctGA