ViewGene
Locus Name:
GeneID:
Location:

GeneID:5901
TrivialName: PA14_37170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37170
PAO1 Ortholog Locus:
Sequence Length:1113
Protein Length:370
Start: 3311021
Stop: 3312133
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC68148.1| (AP005022) hypothetical protein [Streptomyces avermitilis MA-4680]
Identities = 174/360 (48%), Positives = 224/360 (62%), Gaps = 13/360 (3%)
Sequence:
ATGACCCGCATCACCGAAGTCGTGGTCGAGCGTCGCCAGCTCGCCACCGCCGCCTTGCGTACGCGCAACCTG
CCCGCCCCGGAGGCGCTGGCGGAAGGCCAGGCGCTGCTGGCGGTCGGCGAGTTCGCCCTGACCGCCAACAAC
GTCACCTATGCCGCCCTCGGCGATGCCCTGCGCTACTGGGAGTTCTTCCCGGCCGGCGAGGGGCTGGGCATC
GTCCCGGTCTGGGGCTTCGCCGAGGTGCTTGCCTCGCGCTGCCCGGGGGTCGAACCGGGCGAGCGCTTCTAT
GGCTACTATCCGATGGCCAGCCACCTGCTGGTCGCGCCGGCGCAGGTCCGCGGCAGCGGCTTCGTCGACGCC
AGCGAGCACCGCCGGAACCTCCCGTCGGTCTACAACCAGTACCTGCGCTGCAGCAGCGACCCGCTCTACCGG
GCCTCCGACGAGGCCCTGCAGATGCTCCTGCGGCCGCTGTTCACCACCTCGTTCCTGCTCGACGACTTCCTC
GCCGAGCATGCCTTCTTCGGCGCCACCGACCTGCTGCTGAGCAGTGCCTCGAGCAAGACCGCCATCGGCCTG
GCCTTCCTCCTCCAGCGCAATCGTGCGCAACGCGGCCAGGACTACCGCATCGTCGGCCTGACCTCCGCGGGC
AACCGCGCCTTCGTCGAAGGCCTGGGCTGCTATGACGAGGTCCTGGCCTACGACCGCCTGGACGCACTGGAC
GCCAGCGGAGACGCGCTGAGCGTGGATTTCGCCGGCAACGGCGCCCTGCTCGGCCAGTTGCACCAGCGCCTG
GGCGACCGCCTGCGCTACAGTTGCCTGGTCGGCGCCGCCCACTGGGACCAGCGCGGTGGCCTGCCGAAGGCG
CTGCCGGGTCCGACGCCGAAGCTGTTCTTCGCCCCGGCGCAGGCGGAAAAACGCCTCAAGGACTGGGGCGGC
GCGGCGTTCCAGGCGCGCCTGGCGGAAGTCTGGGGCGAGTTCTCGGCCTTCGTCGGCGGCTGGATCCAGGTC
CGCCACGGTGTCGGCGGCAGCGAGGTGCTGGAGGTCTACCAGGACCTGCTGGCCGGGCGCTCGGCACCGCAA
CTGGGCTACATCCTTTCCCTCGACGGCGGCTGA
Translation:
MTRITEVVVERRQLATAALRTRNLPAPEALAEGQALLAVGEFALTANNVTYAALGDALRYWEFFPAGEGLGI
VPVWGFAEVLASRCPGVEPGERFYGYYPMASHLLVAPAQVRGSGFVDASEHRRNLPSVYNQYLRCSSDPLYR
ASDEALQMLLRPLFTTSFLLDDFLAEHAFFGATDLLLSSASSKTAIGLAFLLQRNRAQRGQDYRIVGLTSAG
NRAFVEGLGCYDEVLAYDRLDALDASGDALSVDFAGNGALLGQLHQRLGDRLRYSCLVGAAHWDQRGGLPKA
LPGPTPKLFFAPAQAEKRLKDWGGAAFQARLAEVWGEFSAFVGGWIQVRHGVGGSEVLEVYQDLLAGRSAPQ
LGYILSLDGG*
AnnotationID:5902GeneID:5901
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 13:01:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|29826979|ref|NP_821613.1|  hypothetical protein SAV438 [Streptomyces avermitilis MA-4680]
     Length=366
     Score =  311 bits (796),  Expect = 3e-83
     Identities = 174/360 (48%), Positives = 224/360 (62%), Gaps = 13/360 (3%)

gi|27349621|dbj|BAC46635.1|  bll1370 [Bradyrhizobium japonicum USDA 110]
     Length=361
     Score =  310 bits (793),  Expect = 7e-83
     Identities = 166/365 (45%), Positives = 216/365 (59%), Gaps = 7/365 (1%)

gi|67777562|gb|EAM37189.1|  hypothetical protein BproDRAFT_0982 [Polaromonas sp. JS666]
     Length=379
     Score =  308 bits (790),  Expect = 2e-82
     Identities = 170/352 (48%), Positives = 218/352 (61%), Gaps = 13/352 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:11712




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:28922




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:5901
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
197926
                           gb|AAK25051.1|
                           (AE005972) hypothetical protein [Caulobacter crescentus CB15]
                           374
                           45.98
                           60.16
                           27
                           798.0
     

     
     
197925
                           dbj|BAC46635.1|
                           (AP005939) bll1370 [Bradyrhizobium japonicum USDA 110]
                           370
                           45.40
                           58.91
                           9
                           800.0
     

     
     
197924
                           dbj|BAC68148.1|
                           (AP005022) hypothetical protein [Streptomyces avermitilis MA-4680]
                           388
                           45.36
                           58.50
                           40
                           806.0
     

     






      

          
GC ORFID: 48903How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 1642893Stop: 1641781

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCCGCATCACCGAAGTCGTGGTCGAGCGTCGCCAGCTCGCCACCGCCGCCTTGCGTACGCGCAACCTG 
CCCGCCCCGGAGGCGCTGGCGGAAGGCCAGGCGCTGCTGGCGGTCGGCGAGTTCGCCCTGACCGCCAACAAC 
GTCACCTATGCCGCCCTCGGCGATGCCCTGCGCTACTGGGAGTTCTTCCCGGCCGGCGAGGGGCTGGGCATC 
GTCCCGGTCTGGGGCTTCGCCGAGGTGCTTGCCTCGCGCTGCCCGGGGGTCGAACCGGGCGAGCGCTTCTAT 
GGCTACTATCCGATGGCCAGCCACCTGCTGGTCGCGCCGGCGCAGGTCCGCGGCAGCGGCTTCGTCGACGCC 
AGCGAGCACCGCCGGAACCTCCCGTCGGTCTACAACCAGTACCTGCGCTGCAGCAGCGACCCGCTCTACCGG 
GCCTCCGACGAGGCCCTGCAGATGCTCCTGCGGCCGCTGTTCACCACCTCGTTCCTGCTCGACGACTTCCTC 
GCCGAGCATGCCTTCTTCGGCGCCACCGACCTGCTGCTGAGCAGTGCCTCGAGCAAGACCGCCATCGGCCTG 
GCCTTCCTCCTCCAGCGCAATCGTGCGCAACGCGGCCAGGACTACCGCATCGTCGGCCTGACCTCCGCGGGC 
AACCGCGCCTTCGTCGAAGGCCTGGGCTGCTATGACGAGGTCCTGGCCTACGACCGCCTGGACGCACTGGAC 
GCCAGCGGAGACGCGCTGAGCGTGGATTTCGCCGGCAACGGCGCCCTGCTCGGCCAGTTGCACCAGCGCCTG 
GGCGACCGCCTGCGCTACAGTTGCCTGGTCGGCGCCGCCCACTGGGACCAGCGCGGTGGCCTGCCGAAGGCG 
CTGCCGGGTCCGACGCCGAAGCTGTTCTTCGCCCCGGCGCAGGCGGAAAAACGCCTCAAGGACTGGGGCGGC 
GCGGCGTTCCAGGCGCGCCTGGCGGAAGTCTGGGGCGAGTTCTCGGCCTTCGTCGGCGGCTGGATCCAGGTC 
CGCCACGGTGTCGGCGGCAGCGAGGTGCTGGAGGTCTACCAGGACCTGCTGGCCGGGCGCTCGGCACCGCAA 
CTGGGCTACATCCTTTCCCTCGACGGCGGCTGA