ViewGene
Locus Name:
GeneID:
Location:

GeneID:590
TrivialName: PA14_12450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12450
PAO1 Ortholog Locus:PA3972
Sequence Length:1650
Protein Length:549
Start: 1072466
Stop: 1074115
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07359.1|AE004815_3 (AE004815) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 547/548 (99%), Positives = 547/548 (99%)
Sequence:
ATGAACCTGCACCAGTACGCCGAAACCCACGAAGTGACCAACCAGGTACCGTCGCTGGATGGTGCCAACCTC
TACCGCCTCGACCTGCCTCTCCAGGAGTGGGGGCGTCGCTACCAGGGCGGCTGGGCCGAGGAGCGCCTGCAG
CGCTACGGCGAGCTGGCCGGCGGCCCGCTGATGGCGGCCGGCTTCCTGGCCAACCAGCACAAGCCGGAGTTC
CATAGCCACGACCGCTACGGCAACCGCGTCGACCTGGTGGAGTTCCACCCCGCCTACCACGAGCTGATGCGC
GCCGCCATCGAACACGAACTGCCCTCGCTGCCCTGGACCGACCCGCGCCCCGGCGCCCAGGTGGCGCGGGCC
GGGCTGTCCTACCTGCACAGCCAGGCGGAGGCCGGCACCGGTTGCCCGTTGACCATGACCTACGCCAGCGTG
CCGGCGATTCGCCTGCAGGCGGACCTGGCCGAGAAATGGCTGCCGAAGATCCTCTCCCGCGAGTACGACCCG
CGCAACGTGCCGATGGAGCAGAAGGCGGGCGTCACCATCGGCATGGCGATGACCGAGAAGCAGGGCGGCACC
GACGTCCGCGCCAATACCACGCGGGCCTACCCGGTGGGGATTCCCGGGCCGGGGCAGGCCTACGAACTGGTC
GGGCACAAGTGGTTCTGCTCGGCGCCGATGTGCGACGCCTTCCTCACCCTGGCTTACACCGACAAGGGCCTG
ACCTGCTTCCTGCTGCCGCGCCACCGGCCGGACGGCAGCCGCAACCAGTTCTACATCCAGCGCCTGAAGGAC
AAGCTGGGCAACTGGTCGAACGCCTCCAGCGAAATCGAGTATCGCGGCGCCCTGGCCTGGATGGTCGGCGAA
GAGGGCCGTGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGCTTCGACTGCATGATCGGCTCCAGC
GCATTGATGCGTCAGGCGTTGACCCAGGCTGCCCACCACTGTGCCTACCGCAAGGTCGGCGGGCGGGTGCTG
GCCGAGCAACCGCTGATGCAGAACGTGCTCGCCGACCTGGCCCTGGAAAGCGAGGCGGCGCTGGCCCTGACC
CTGCGCATGGGGCATGCCCTGGACCGTGCCCACGACGAGCAGGAGGAGAAGTTCGCCCGCCTGGTCACCGCG
GTGGGCAAGTACTGGATCTGCAAGCGTGCCCCGGCGATGATCAACGAAGCCTCCGAATGCATGGGCGGTGCC
GGCTACGTCGAGGAAACCATCCTGCCGCGGCTGTACCGCGAGGCCCCGGTGAACTCGATCTGGGAAGGTTCC
GGCAACGTGCAGTGCCTGGACGTGCTGCGTGCCCTGTCGAAGGAGCCGGGGGTGCTCGACGCGCTGTTCGCC
GAACTGGGCGACGGCCATGGCGACGCCCGTCTCGCCGCGCACATCGGCAACCTCAAGGCGGCCTTCGCCGAC
ACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAGGACGTGGCGATCGCCTTGCAGGCCAAGCTGTTG
CTGGAAGCCGGCAACTCCGCGGTGTCCGACGCCTTCATCGGCAGTCGCCTGGGGGACGGCGGGCGGGTCTAC
GGCACCCTCCCGCGCGGCGTCGAGGTCGAGGCGCTGTTGGCTCGCGCCACCCCGCACCTGGCCTGA
Translation:
MNLHQYAETHEVTNQVPSLDGANLYRLDLPLQEWGRRYQGGWAEERLQRYGELAGGPLMAAGFLANQHKPEF
HSHDRYGNRVDLVEFHPAYHELMRAAIEHELPSLPWTDPRPGAQVARAGLSYLHSQAEAGTGCPLTMTYASV
PAIRLQADLAEKWLPKILSREYDPRNVPMEQKAGVTIGMAMTEKQGGTDVRANTTRAYPVGIPGPGQAYELV
GHKWFCSAPMCDAFLTLAYTDKGLTCFLLPRHRPDGSRNQFYIQRLKDKLGNWSNASSEIEYRGALAWMVGE
EGRGVPTIIEMVAMTRFDCMIGSSALMRQALTQAAHHCAYRKVGGRVLAEQPLMQNVLADLALESEAALALT
LRMGHALDRAHDEQEEKFARLVTAVGKYWICKRAPAMINEASECMGGAGYVEETILPRLYREAPVNSIWEGS
GNVQCLDVLRALSKEPGVLDALFAELGDGHGDARLAAHIGNLKAAFADTADIQYRARQLTEDVAIALQAKLL
LEAGNSAVSDAFIGSRLGDGGRVYGTLPRGVEVEALLARATPHLA*
AnnotationID:599GeneID:590
AnnotatorUID: urbach
Modification Date/Time: 2004-05-24 12:12:58
Gene Name:
Confidence Code:3
GeneProduct:possible acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA3972
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1960, pfam00441, KOG0137
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11668 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]
Length = 393
Score =  177 bits (449), Expect = 7e-45
Identities = 105/394 (26%), Positives = 168/394 (42%), Gaps = 47/394 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1183




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:590
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1010
                           PA3972_tr
                           translation of PA3972
                           549
                           99.63
                           99.63
                           0
                           2872.0
     

     
     
39649
                           gb|AAG07359.1|AE004815_3
                           (AE004815) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           549
                           99.63
                           99.63
                           0
                           2872.0
     

     
     
39650
                           gb|AAN70349.1|AE016676_9
                           (AE016792) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           550
                           83.81
                           90.54
                           1
                           2455.0
     

     
     
39651
                           emb|CAE26033.1|
                           (BX572594) possible acyl-CoA dehydrogenase [Rhodopseudomonas palustris CGA009]
                           557
                           57.27
                           69.12
                           10
                           1605.0
     

     
     
39652
                           emb|CAC13064.1|
                           (AL939107) putative oxidoreductase [Streptomyces coelicolor A3(2)]
                           577
                           51.29
                           61.87
                           38
                           1379.0
     

     






      

          
GC ORFID: 43592How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3972Glimmer Score: 

          
Start: 3881472Stop: 3879823

          
Length: 1650


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3972 translation of PA3972Homolog Bit Score 1110.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5345 (ORF: BLASTX 924.0), t_PA3972 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGCACCAGTACGCCGAAACCCACGAAGTGACCAACCAGGTACCGTCGCTGGATGGTGCCAACCTC 
TACCGCCTCGACCTGCCTCTCCAGGAGTGGGGGCGTCGCTACCAGGGCGGCTGGGCCGAGGAGCGCCTGCAG 
CGCTACGGCGAGCTGGCCGGCGGCCCGCTGATGGCGGCCGGCTTCCTGGCCAACCAGCACAAGCCGGAGTTC 
CATAGCCACGACCGCTACGGCAACCGCGTCGACCTGGTGGAGTTCCACCCCGCCTACCACGAGCTGATGCGC 
GCCGCCATCGAACACGAACTGCCCTCGCTGCCCTGGACCGACCCGCGCCCCGGCGCCCAGGTGGCGCGGGCC 
GGGCTGTCCTACCTGCACAGCCAGGCGGAGGCCGGCACCGGTTGCCCGTTGACCATGACCTACGCCAGCGTG 
CCGGCGATTCGCCTGCAGGCGGACCTGGCCGAGAAATGGCTGCCGAAGATCCTCTCCCGCGAGTACGACCCG 
CGCAACGTGCCGATGGAGCAGAAGGCGGGCGTCACCATCGGCATGGCGATGACCGAGAAGCAGGGCGGCACC 
GACGTCCGCGCCAATACCACGCGGGCCTACCCGGTGGGGATTCCCGGGCCGGGGCAGGCCTACGAACTGGTC 
GGGCACAAGTGGTTCTGCTCGGCGCCGATGTGCGACGCCTTCCTCACCCTGGCTTACACCGACAAGGGCCTG 
ACCTGCTTCCTGCTGCCGCGCCACCGGCCGGACGGCAGCCGCAACCAGTTCTACATCCAGCGCCTGAAGGAC 
AAGCTGGGCAACTGGTCGAACGCCTCCAGCGAAATCGAGTATCGCGGCGCCCTGGCCTGGATGGTCGGCGAA 
GAGGGCCGTGGCGTGCCGACCATCATCGAGATGGTCGCCATGACCCGCTTCGACTGCATGATCGGCTCCAGC 
GCATTGATGCGTCAGGCGTTGACCCAGGCTGCCCACCACTGTGCCTACCGCAAGGTCGGCGGGCGGGTGCTG 
GCCGAGCAACCGCTGATGCAGAACGTGCTCGCCGACCTGGCCCTGGAAAGCGAGGCGGCGCTGGCCCTGACC 
CTGCGCATGGGGCATGCCCTGGACCGTGCCCACGACGAGCAGGAGGAGAAGTTCGCCCGCCTGGTCACCGCG 
GTGGGCAAGTACTGGATCTGCAAGCGTGCCCCGGCGATGATCAACGAAGCCTCCGAATGCATGGGCGGTGCC 
GGCTACGTCGAGGAAACCATCCTGCCGCGGCTGTACCGCGAGGCCCCGGTGAACTCGATCTGGGAAGGTTCC 
GGCAACGTGCAGTGCCTGGACGTGCTGCGTGCCCTGTCGAAGGAGCCGGGGGTGCTCGACGCGCTGTTCGCC 
GAACTGGGCGACGGCCATGGCGACGCCCGTCTCGCCGCGCACATCGGCAACCTCAAGGCGGCCTTCGCCGAC 
ACCGCCGACATCCAGTACCGCGCCCGCCAGCTCACCGAGGACGTGGCGATCGCCTTGCAGGCCAAGCTGTTG 
CTGGAAGCCGGCAACTCCGCGGTGTCCGACGCCTTCATCGGCAGTCGCCTGGGGGACGGCGGGCGGGTCTAC 
GGCACCCTCCCGCGCGGCGTCGAGGTCGAGGCGCTGTTGGCTCGCGCCACCCCGCACCTGGCCTGA