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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08803.1|AE004954_5 (AE004954) sarcosine oxidase alpha subunit [Pseudomonas aeruginosa PAO1]
Identities = 1005/1005 (100%), Positives = 1005/1005 (100%)
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Sequence:
ATGAGCCAGATCAATCGCCTGTCCAGCGGCGGCCGCATCGACCGCAACCGCCCGCTGACCTTCAGCTTCAAC
GGCCAGCACTACCAGGGCTATGCCGGCGACACCCTGGCCGCCGCGCTGCTGGCCAACGGCGTCGACATCGTC
GGCCGCAGCTTCAAGTACTCGCGGGCGCGCGGCATCGTCGCCGCCGGCGCCGAGGAGCCCAACGCGATCCTG
CAGATCGGCTCCCGCGAAGCCACCCAGATCCCCAACGTGCGCGCCACCCAGCAGGCGCTCTACGGCGGCCTG
GTGGCCACCAGCACCAACGGCTGGCCGAATGTGCAGAACGACCTGATGGGAATCTTCGGCAAGGTCGGCGGC
AAGCTGATGCCGCCCGGTTTCTACTACAAGACCTTCATGTACCCGCAGTCGATGTGGATGACCTACGAGAAG
TACATCCGCAAGGCCGCCGGCCTGGGCCGCGCGCCGACCGAGGTCGATCCGGACAGCTACGACTGGATGAAC
CACCACTGCGACGTGCTGGTGGTCGGCGCCGGCCCGGCCGGCCTGGCCGCCGCCCTCGCCGCCGCTCGCAGC
GGCGCGCGGGTGATTCTCGCCGACGAGCAGGAAGAGTTCGGCGGCAGCCTGCTGGACACCCGCGAGACCCTC
GACGGCAAGCCCGCCGCCGAGTGGGTCGCGGACGCCGTGGCCGAGCTGCAAGGCCTGCCGGAAGTCATCCTG
CTACCGCGCTCCACGGTCAACGGCTACCACGACCACAACTTCCTCACCATCCACGAACGGCGCACCGACCAC
CTCGGCGAGGTCGCCCCGCTCGGCCAGGTCCGCCAGCGCGTGCACCGCGTACGCGCCAAGCGCGTGGTACTG
GCCGCCGGCGCCCATGAGCGGCCGCTGGTCTACGGCAACAACGACCTGCCCGGCAACATGCTCGCCGGCGCG
GTTTCCACCTATGTACGGCGCTACGGCGTGGCACCGGGCAAGAAACTGGTGCTGGCCACCAACAACGACTAC
GCCTACCGCGTCGCCCTCGACTGGCAGGAAGCCGGCCTGCAAGTGGTGGCCATCGCCGACGCCAGGGCCAAT
CCGCGCGGCGAGTGGGTCGAGGAAGCACGCCAACGCGGTATGCGGGTGATCACCGGCAGTTCGGTGATCGAG
GCTCGCGGCGGCAAGCGGGTCAGCGGCGCCAAGGTCGCCCGGATCGACTTGCAGGCCATGCGCGCCAGCGGC
GGCGAATGGCTGGACTGCGACCTGATCGCCAGCTCCGGCGGCTACAGCCCGGTCGTGCACCTGGCCTCGCAC
CTGGGCGGCAAGCCGGAATGGCGCGAGGAAATCCTCGCCTTCGTCCCCGGCGAAGGCCTGCAGAAACGCATC
TGCGCCGGCGCCGTGAACGGCGTGTTCGGGCTCGCCGAGGTGCTCGCCGACGGCTACCAGGCCGGGAGCCGC
GCCGCCCTCGACGCCGGCTACAAGACCGCCGCCGGCAGCCTGCCGAAGGTCCAGCCGCGCCGCGAGGAAGCG
TCCGTCGCGCTGTTCCAGGTGCCCCACGAGAAGCCCACGGCACGCGCACCGAAGCAGTTCGTCGATCCGCAG
AACGACGTCACCGCCGCCGCCATCGAACTGGCCTGCCGCGAGGGCTTCGAGTCCATCGAGCACGTCAAGCGC
TACACCGCGCTGGGCTTCGGCACCGACCAGGGCAAGCTGGGCAACATCAACGGCCTGGCGATCGCCGCGCGG
GCCCAGGGCAAGAGCATCGCCGACACCGGCACCACCATGTTCCGTCCGAACTACACCCCGGTGACCTTCGGC
GCCGTCGCCGGCCGCCACTGCGGGCACCTGTTCGAACCGGTGCGCTTCACCGCCCTGCACGCCTGGCACGTG
AAGAACGGCGCCGAGTTCGAAGACGTCGGCCAGTGGAAGCGGCCGTGGTACTTCCCGCGCCGCGGCGAGGAC
ATGCACGCCGCCGTGGCCCGCGAATGCCGCGCGGTGCGCGAGGCGGTCGGCCTGCTCGACGCCTCGACCCTG
GGCAAGATCGACATCCAGGGCCCGGACGCGCGGGAGTTCCTCAACCGGGTCTACACCAACGCCTGGACCAAG
CTCGACGTCGGCAAGGCGCGCTACGGCCTGATGTGCAAGGAAGACGGGATGGTCTTCGACGACGGCGTGACC
GCCTGCCTGGCCGACAACCACTTCGTCATGACCACCACCACCGGCGGCGCCGCCCGCGTACTGGAGTGGCTG
GAGCTGTACCACCAGACCGAATGGCCGGAGCTGAAGGTGTACTTCACCTCGGTCACCGACCACTACGCGACC
CTCACCCTGTCCGGCCCGAACAGCCGCAAGCTGCTCGCCGAAGTCACCGACATCGACCTGGACAAGGACGCC
TTCCCCTTCATGACCTGGAAGGAAGGCAAGGTCGCCGGGGTGCCGGCGCGGGTGTTCCGCATCTCCTTCACC
GGCGAGCTGAGCTACGAGGTGAACGTCCAGGCCGACTACGCCATGGGCGTGCTCGAAGCGCTCGCCGAGCAC
GGTGCGAAGTACGGCCTGACACCCTACGGCACCGAGACCATGCACGTCCTGCGCGCCGAGAAGGGCTTCATC
ATCGTCGGCCAGGACACCGATGCCTCGGTCACCCCGGACGATCTCAACATGGGCTGGGCGGTGGGCCGCAGC
AAGCCGTTCTCCTGGATCGGCTGGCGCGGCATGAACCGCGCCGACTGCCTGCGCGAGGATCGCAAGCAACTG
GTCGGACTCAGGCCGAGCAACCCGCAGGAGGTACTGCCCGAAGGCGCGCAACTGGTGTTCGACACCCAGCAG
GCGATCCCGATGAAGATGGTCGGCCACGTCACCTCCAGCTACATGAGCGCCAGCCTCGGCCACGGCTTCGCC
CTGGCGGTGGTGAAAGGCGGCCTCAAGCGCATGGGCCAGAAGGTCTACGCGCCGCTGGCGGACGGCCGCTTC
ATCGAGGCGGAGATCTGCTCCTCGGTGTTCTACGACCCCAAAGGGGAGCGGCAGAACGTGGATTGA |
Translation:
MSQINRLSSGGRIDRNRPLTFSFNGQHYQGYAGDTLAAALLANGVDIVGRSFKYSRARGIVAAGAEEPNAIL
QIGSREATQIPNVRATQQALYGGLVATSTNGWPNVQNDLMGIFGKVGGKLMPPGFYYKTFMYPQSMWMTYEK
YIRKAAGLGRAPTEVDPDSYDWMNHHCDVLVVGAGPAGLAAALAAARSGARVILADEQEEFGGSLLDTRETL
DGKPAAEWVADAVAELQGLPEVILLPRSTVNGYHDHNFLTIHERRTDHLGEVAPLGQVRQRVHRVRAKRVVL
AAGAHERPLVYGNNDLPGNMLAGAVSTYVRRYGVAPGKKLVLATNNDYAYRVALDWQEAGLQVVAIADARAN
PRGEWVEEARQRGMRVITGSSVIEARGGKRVSGAKVARIDLQAMRASGGEWLDCDLIASSGGYSPVVHLASH
LGGKPEWREEILAFVPGEGLQKRICAGAVNGVFGLAEVLADGYQAGSRAALDAGYKTAAGSLPKVQPRREEA
SVALFQVPHEKPTARAPKQFVDPQNDVTAAAIELACREGFESIEHVKRYTALGFGTDQGKLGNINGLAIAAR
AQGKSIADTGTTMFRPNYTPVTFGAVAGRHCGHLFEPVRFTALHAWHVKNGAEFEDVGQWKRPWYFPRRGED
MHAAVARECRAVREAVGLLDASTLGKIDIQGPDAREFLNRVYTNAWTKLDVGKARYGLMCKEDGMVFDDGVT
ACLADNHFVMTTTTGGAARVLEWLELYHQTEWPELKVYFTSVTDHYATLTLSGPNSRKLLAEVTDIDLDKDA
FPFMTWKEGKVAGVPARVFRISFTGELSYEVNVQADYAMGVLEALAEHGAKYGLTPYGTETMHVLRAEKGFI
IVGQDTDASVTPDDLNMGWAVGRSKPFSWIGWRGMNRADCLREDRKQLVGLRPSNPQEVLPEGAQLVFDTQQ
AIPMKMVGHVTSSYMSASLGHGFALAVVKGGLKRMGQKVYAPLADGRFIEAEICSSVFYDPKGERQNVD* |
AnnotationID:69 | GeneID:59 |
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Modification Date/Time: |
2005-03-17 12:12:22 |
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GeneProduct: | sarcosine oxidase alpha subunit |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (5) Carbon compound catabolism |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >gb|AAN65956.1|AE016223_10 (AE016775) sarcosine oxidase, alpha subunit [Pseudomonas putida
KT2440]
Length = 1004
Score = 1690 bits (4377), Expect = 0.0
Identities = 819/1005 (81%), Positives = 907/1005 (90%), Gaps = 2/1005 (0%)
>gb|AAO54002.1| (AE016857) sarcosine oxidase, alpha subunit [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 1006
Score = 1685 bits (4364), Expect = 0.0
Identities = 816/1006 (81%), Positives = 906/1006 (90%), Gaps = 1/1006 (0%)
>emb|CAD14805.1| (AL646062) PROBABLE SARCOSINE OXIDASE (ALPHA SUBUNIT) OXIDOREDUCTASE
PROTEIN [Ralstonia solanacearum]
Length = 1003
Score = 1094 bits (2830), Expect = 0.0
Identities = 580/1012 (57%), Positives = 716/1012 (70%), Gaps = 16/1012 (1%)
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Structural Features: | COG0404, GcvT, Glycine cleavage system T protein (aminomethyltransferase)
[Amino acid transport and metabolism]
CD-Length = 379 residues, 99.7% aligned
Score = 377 bits (970), Expect = 3e-105
Identities = 147/395 (37%), Positives = 211/395 (53%), Gaps = 18/395 (4%)
pfam01571, GCV_T, Glycine cleavage T-protein (aminomethyl transferase).
CD-Length = 327 residues, 99.4% aligned
Score = 213 bits (543), Expect = 1e-55
Identities = 105/333 (31%), Positives = 158/333 (47%), Gaps = 11/333 (3%) |
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