ViewGene
Locus Name:
GeneID:
Location:

GeneID:589
TrivialName: PA14_43400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43400
PAO1 Ortholog Locus:PA1633
Sequence Length:1695
Protein Length:564
Start: 3867454
Stop: 3865760
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05022.1|AE004591_2 (AE004591) potassium-transporting ATPase, A chain [Pseudomonas aeruginosa PAO1]
Identities = 562/564 (99%), Positives = 563/564 (99%)
Sequence:
ATGAACAGCCACGAGATTCTCTTGATCCTGGCCTTTTTCGCCCTGGTCCTGGTGCCTGCACCGTTCCTCGGG
CGCTACTGCTTCAAGGTGATGGAAGGCCAACGCAATCTCCTCAGCGCGCCGCTGGCGCCACTGGAGCGCGTC
TGCTATCGCCTGTTCGGCGTCGATCCGGCGAGCGAGCAGGACTGGAAGACCTACACCCTGGCGCTGCTGGCA
TTCAACCTGGCCGGCCTGGTCCTGCTGTTCTCGATCCTCATGCTGCAGGGCAGCCTGCCGCTGAACCCGCAG
CACCTGCCGGGCCTGGAATGGACCCTGGCGTTCAACACCGCGGTCAGTTTCGTCACCAACACCAACTGGCAG
GCCTACAGCGGCGAGGCCTCGCTGAGCTACTTCAGCCAGATGGTCGGCCTCACGGTGCAGAACTTCGTCAGC
GCGGCGGTCGGCCTCTGCGTGCTGGTGGCCCTGGCGCGCGGCATCAGCCGCCGCTCCACACGACAGCTGGGC
AACTTCTGGGTCGACCTGACCCGCGGCACCCTCTACGTGCTGCTGCCGCTGTGCCTGCTGCTGGCGCTGCTG
CTGGTCTGGCAGGGCGTGCCGCAGACCTTCTTCGACTACGTCCATGCCACCACCTTGCAAGGCGCCGAGCAG
ACCATCCCGCTCGGCCCGGCGGCCAGCCAGATCGCCATCAAGCAACTGGGCACCAACGGCGGCGGCTTCTTC
GGCGTCAACTCGACTCATCCGTTCGAGAACCCGAGTGCCTGGAGCAACCTGTTCGAAGTGGCCTCGATCATC
CTGATCCCGGCGGCGCTGGTATTCACCTTCGGCCATTACGTGAAGGACCTGCGCCAGAGCCGCGCGATCCTC
GGCTGCATGCTGCTGCTGTTCTGCCTCGGCCTGAGCCTGTCGCTGTGGGCCGAATACCAGCCGAACCCGGCG
CTGGCGCAGTTGCCGGTCGAGCAGGGCGCACCGATGGAGGGCAAGGAGAGTCGCTTCGGCACCGCCGCCAGC
ATGCTCTGGGCGATCACCACCACCGCCGCCTCGAACGGCTCGGTGAACGCCATGCACGACAGCCTGAGCCCC
CTGGGCGGCATGCTGCCGCTGCTGAACATGATGCTCGGCGAGGTGATCTTCGGCGGCGTCGGCGCCGGCCTC
TACGGCATGCTGCTGTTCGTCCTGATCGCGGTGTTCCTCGCCGGCCTGATGGTCGGGCGGACGCCGGAGTAC
CTGGGCAAGAAGCTCGAGGCGAAGGAGGTCCGCCTGCTGGTCTTCACCCTGCTGGTGATGCCTGTCGGCGTG
CTGGTGCTCGGCGCCATTGCCGCCAGCCTGCCGGGACCGGCCTCGGCGGTGACCAACCCCGGCCCGCACGGC
TTCAGCCAACTGCTCTACGCCTACACCTCGGGGAGCGCCAACAACGGCTCGGCGTTTGCCGGTTTCGGTGCC
AACACGCCGTTCCACAACCTGATGATCGGCCTGGCCATGCTCATTGGCCGCTTCGGCTACATCCTGCCGATC
CTCGCCATCGCCGGCAGCCTGGCGGCGAAGAAGGCCAGCCCGGTGGGGCCGAACAGTTTCCCGACCCATGGT
CCGCTGTTCGTCAGCCTGCTCACCGTGACCATCCTGCTGGTCGGCGGCCTGACCTTCCTGCCGACCCTGGCC
CTCGGCCCGATCGCTGAACAACTGAGCCTCGGCTTCTGA
Translation:
MNSHEILLILAFFALVLVPAPFLGRYCFKVMEGQRNLLSAPLAPLERVCYRLFGVDPASEQDWKTYTLALLA
FNLAGLVLLFSILMLQGSLPLNPQHLPGLEWTLAFNTAVSFVTNTNWQAYSGEASLSYFSQMVGLTVQNFVS
AAVGLCVLVALARGISRRSTRQLGNFWVDLTRGTLYVLLPLCLLLALLLVWQGVPQTFFDYVHATTLQGAEQ
TIPLGPAASQIAIKQLGTNGGGFFGVNSTHPFENPSAWSNLFEVASIILIPAALVFTFGHYVKDLRQSRAIL
GCMLLLFCLGLSLSLWAEYQPNPALAQLPVEQGAPMEGKESRFGTAASMLWAITTTAASNGSVNAMHDSLSP
LGGMLPLLNMMLGEVIFGGVGAGLYGMLLFVLIAVFLAGLMVGRTPEYLGKKLEAKEVRLLVFTLLVMPVGV
LVLGAIAASLPGPASAVTNPGPHGFSQLLYAYTSGSANNGSAFAGFGANTPFHNLMIGLAMLIGRFGYILPI
LAIAGSLAAKKASPVGPNSFPTHGPLFVSLLTVTILLVGGLTFLPTLALGPIAEQLSLGF*
AnnotationID:598GeneID:589
AnnotatorUID: diggins
Modification Date/Time: 2005-04-28 07:07:48
Gene Name:kdpA
Confidence Code:2
GeneProduct:potassium-transporting ATPase, A chain
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03814
Secondary Functional Category(ies):
EC Number:3.6.1.36
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69742.1|AE016610_8 (AE016789) potassium-transporting ATPase, A subunit [Pseudomonas
           putida KT2440]
          Length = 564

 Score =  919 bits (2376), Expect = 0.0
 Identities = 457/564 (81%), Positives = 507/564 (89%)

>gb|AAO55758.1| (AE016863) potassium-transporting ATPase, A subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 564

 Score =  879 bits (2271), Expect = 0.0
 Identities = 433/564 (76%), Positives = 493/564 (87%)

>gb|AAN79256.1|AE016757_160 (AE016757) Potassium-transporting ATPase A chain [Escherichia coli
           CFT073]
          Length = 557

 Score =  595 bits (1535), Expect = e-169
 Identities = 306/562 (54%), Positives = 391/562 (69%), Gaps = 6/562 (1%)






 
Structural Features:
pfam03814, KdpA, Potassium-transporting ATPase A subunit.
CD-Length = 553 residues, 100.0% aligned
Score =  758 bits (1960), Expect = 0.0
Identities = 341/554 (61%), Positives = 408/554 (73%), Gaps = 1/554 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1181




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18323




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37261




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:589_cdd.html


    		




 
URL:

















    ReferenceID:37887




  
Author/Investigator(s):
        Treuner-Lange A, Kuhn A, Durre P.





  
Title:
        The kdp system of Clostridium acetobutylicum: cloning, sequencing, and transcriptional regulation in response to potassium concentration.




  
PubMed:
        9226259


MedLine:
        




    
Source:
J Bacteriol. 1997 Jul;179(14):4501-12.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9226259

















    ReferenceID:37888




  
Author/Investigator(s):
        Sugiura A, Nakashima K, Tanaka K, Mizuno T.





  
Title:
        Clarification of the structural and functional features of the osmoregulated kdp operon of Escherichia coli.




  
PubMed:
        1630316


MedLine:
        




    
Source:
Mol Microbiol. 1992 Jul;6(13):1769-76.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1630316

















    ReferenceID:37898




  
Author/Investigator(s):
        Gassel M, Siebers A, Epstein W, Altendorf K.





  
Title:
        Assembly of the Kdp complex, the multi-subunit K+-transport ATPase of Escherichia coli.




  
PubMed:
        9858692


MedLine:
        




    
Source:
Biochim Biophys Acta. 1998 Dec 9;1415(1):77-84.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=99077600&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:589
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1009
                           PA1633_tr
                           translation of PA1633
                           564
                           99.64
                           99.82
                           0
                           2872.0
     

     
     
39587
                           gb|AAG05022.1|AE004591_2
                           (AE004591) potassium-transporting ATPase, A chain [Pseudomonas aeruginosa PAO1]
                           564
                           99.64
                           99.82
                           0
                           2872.0
     

     
     
39588
                           gb|AAN69742.1|AE016610_8
                           (AE016789) potassium-transporting ATPase, A subunit [Pseudomonas putida KT2440]
                           564
                           81.02
                           89.89
                           0
                           2376.0
     

     
     
39589
                           gb|AAO55758.1|
                           (AE016863) potassium-transporting ATPase, A subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           564
                           76.77
                           87.41
                           0
                           2271.0
     

     
     
39590
                           dbj|BAB50091.1|
                           (AP003001) potassium-transporting ATPase, A chain; KdpA [Mesorhizobium loti]
                           569
                           56.23
                           71.17
                           7
                           1628.0
     

     






      

          
GC ORFID: 43591How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1633Glimmer Score: 

          
Start: 1086455Stop: 1088149

          
Length: 1695


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1633 translation of PA1633Homolog Bit Score 1110.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1034 (ORF: BLASTX 877.0), t_PA1633 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGCCACGAGATTCTCTTGATCCTGGCCTTTTTCGCCCTGGTCCTGGTGCCTGCACCGTTCCTCGGG 
CGCTACTGCTTCAAGGTGATGGAAGGCCAACGCAATCTCCTCAGCGCGCCGCTGGCGCCACTGGAGCGCGTC 
TGCTATCGCCTGTTCGGCGTCGATCCGGCGAGCGAGCAGGACTGGAAGACCTACACCCTGGCGCTGCTGGCA 
TTCAACCTGGCCGGCCTGGTCCTGCTGTTCTCGATCCTCATGCTGCAGGGCAGCCTGCCGCTGAACCCGCAG 
CACCTGCCGGGCCTGGAATGGACCCTGGCGTTCAACACCGCGGTCAGTTTCGTCACCAACACCAACTGGCAG 
GCCTACAGCGGCGAGGCCTCGCTGAGCTACTTCAGCCAGATGGTCGGCCTCACGGTGCAGAACTTCGTCAGC 
GCGGCGGTCGGCCTCTGCGTGCTGGTGGCCCTGGCGCGCGGCATCAGCCGCCGCTCCACACGACAGCTGGGC 
AACTTCTGGGTCGACCTGACCCGCGGCACCCTCTACGTGCTGCTGCCGCTGTGCCTGCTGCTGGCGCTGCTG 
CTGGTCTGGCAGGGCGTGCCGCAGACCTTCTTCGACTACGTCCATGCCACCACCTTGCAAGGCGCCGAGCAG 
ACCATCCCGCTCGGCCCGGCGGCCAGCCAGATCGCCATCAAGCAACTGGGCACCAACGGCGGCGGCTTCTTC 
GGCGTCAACTCGACTCATCCGTTCGAGAACCCGAGTGCCTGGAGCAACCTGTTCGAAGTGGCCTCGATCATC 
CTGATCCCGGCGGCGCTGGTATTCACCTTCGGCCATTACGTGAAGGACCTGCGCCAGAGCCGCGCGATCCTC 
GGCTGCATGCTGCTGCTGTTCTGCCTCGGCCTGAGCCTGTCGCTGTGGGCCGAATACCAGCCGAACCCGGCG 
CTGGCGCAGTTGCCGGTCGAGCAGGGCGCACCGATGGAGGGCAAGGAGAGTCGCTTCGGCACCGCCGCCAGC 
ATGCTCTGGGCGATCACCACCACCGCCGCCTCGAACGGCTCGGTGAACGCCATGCACGACAGCCTGAGCCCC 
CTGGGCGGCATGCTGCCGCTGCTGAACATGATGCTCGGCGAGGTGATCTTCGGCGGCGTCGGCGCCGGCCTC 
TACGGCATGCTGCTGTTCGTCCTGATCGCGGTGTTCCTCGCCGGCCTGATGGTCGGGCGGACGCCGGAGTAC 
CTGGGCAAGAAGCTCGAGGCGAAGGAGGTCCGCCTGCTGGTCTTCACCCTGCTGGTGATGCCTGTCGGCGTG 
CTGGTGCTCGGCGCCATTGCCGCCAGCCTGCCGGGACCGGCCTCGGCGGTGACCAACCCCGGCCCGCACGGC 
TTCAGCCAACTGCTCTACGCCTACACCTCGGGGAGCGCCAACAACGGCTCGGCGTTTGCCGGTTTCGGTGCC 
AACACGCCGTTCCACAACCTGATGATCGGCCTGGCCATGCTCATTGGCCGCTTCGGCTACATCCTGCCGATC 
CTCGCCATCGCCGGCAGCCTGGCGGCGAAGAAGGCCAGCCCGGTGGGGCCGAACAGTTTCCCGACCCATGGT 
CCGCTGTTCGTCAGCCTGCTCACCGTGACCATCCTGCTGGTCGGCGGCCTGACCTTCCTGCCGACCCTGGCC 
CTCGGCCCGATCGCTGAACAACTGAGCCTCGGCTTCTGA